ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21c08 |
|---|---|
| Clone Library Name | barley_pub |
>RL5A_ORYSA (P49625) 60S ribosomal protein L5-1| Length = 304 Score = 135 bits (339), Expect = 7e-32 Identities = 66/75 (88%), Positives = 71/75 (94%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 Q+HFSEY+KKGI+ADGMEALYKKVHAAIRADPT+AKSTK+ P THKRYN KKLTYEQRKA Sbjct: 220 QAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKA 279 Query: 299 SLVERLNALNSSGGA 255 SLVERLNALNSS GA Sbjct: 280 SLVERLNALNSSAGA 294
>RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2| Length = 304 Score = 134 bits (336), Expect = 2e-31 Identities = 65/75 (86%), Positives = 71/75 (94%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 Q+HFSEY+KKGI+ADGME+LYKKVHAAIRADPT+AKSTK+ P THKRYN KKLTYEQRKA Sbjct: 220 QAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKA 279 Query: 299 SLVERLNALNSSGGA 255 SLVERLNALNSS GA Sbjct: 280 SLVERLNALNSSAGA 294
>RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5| Length = 302 Score = 113 bits (283), Expect = 2e-25 Identities = 56/72 (77%), Positives = 61/72 (84%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 QSHFSEYIKKGIEAD +E LYKKVHAAIRA+P KS K PK HKRYN KKLTY++RKA Sbjct: 219 QSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKA 278 Query: 299 SLVERLNALNSS 264 LVERLNALNS+ Sbjct: 279 RLVERLNALNSA 290
>RL5_SOLME (P93779) 60S ribosomal protein L5 (Fragment)| Length = 121 Score = 111 bits (278), Expect = 9e-25 Identities = 52/74 (70%), Positives = 61/74 (82%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 QSHFS YIK + D +E +YKKVHAAIR DP+ KS K+PPKTHKRYN KKLTYE+RKA Sbjct: 38 QSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKA 97 Query: 299 SLVERLNALNSSGG 258 L+ERLNALN++GG Sbjct: 98 KLIERLNALNAAGG 111
>RL5_ARATH (P49227) 60S ribosomal protein L5| Length = 301 Score = 104 bits (260), Expect = 1e-22 Identities = 48/74 (64%), Positives = 59/74 (79%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 Q+HFS YIKKG+EA+ +E +YKKVHAAIRA+P K+ K PK HKRYN KKLTYE+RK Sbjct: 219 QTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKN 278 Query: 299 SLVERLNALNSSGG 258 L+ER+ ALN +GG Sbjct: 279 KLIERVKALNGAGG 292
>RL5_BOMMO (O76190) 60S ribosomal protein L5| Length = 299 Score = 62.8 bits (151), Expect = 5e-10 Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 8/73 (10%) Frame = -1 Query: 470 FSEYIKKGIEADGMEALYKKVHAAIRADPT-IAKSTKEPPKTHKRYNPKKLT-------Y 315 FS+YIK G+ AD +EA+YKK H AIRADP+ K K+ KR+N +KLT Sbjct: 223 FSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRI 282 Query: 314 EQRKASLVERLNA 276 +Q+KAS ++RL A Sbjct: 283 KQKKASFIKRLQA 295
>RL5_NEUCR (O59953) 60S ribosomal protein L5 (CPR4)| Length = 301 Score = 62.0 bits (149), Expect = 8e-10 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 7/78 (8%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHK-------RYNPKKL 321 +S F+ YI+ +EADG+E LY + HAAIR DP ++ P KT + +Y KL Sbjct: 223 KSQFNRYIEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKL 282 Query: 320 TYEQRKASLVERLNALNS 267 T EQR A + ER+ AL S Sbjct: 283 TREQRAAGVQERIAALRS 300
>RL5_STYCL (Q26481) 60S ribosomal protein L5| Length = 294 Score = 61.6 bits (148), Expect = 1e-09 Identities = 31/56 (55%), Positives = 39/56 (69%) Frame = -1 Query: 470 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRK 303 FS+YIK G+ AD +E +Y K HAAIR DPT K T KT KR+N KK+T+ QR+ Sbjct: 222 FSQYIKHGVTADTVEEMYTKAHAAIREDPTPKKKTDFAGKT-KRWNRKKMTFSQRR 276
>RL5_HELAN (O65353) 60S ribosomal protein L5| Length = 297 Score = 58.2 bits (139), Expect = 1e-08 Identities = 34/62 (54%), Positives = 42/62 (67%), Gaps = 3/62 (4%) Frame = -1 Query: 470 FSEYIKKGIEADGMEALYKKVHAAIRADP---TIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 FS+YIK G+ AD +E LYKK H AIRA+P T+AK K PK KR+ KKLT EQR+ Sbjct: 223 FSQYIKLGLNADAIEGLYKKAHEAIRANPARKTVAK--KAHPK--KRWTEKKLTREQRQG 278 Query: 299 SL 294 + Sbjct: 279 KV 280
>RL5A_XENLA (P15125) 60S ribosomal protein L5-A| Length = 295 Score = 57.0 bits (136), Expect = 3e-08 Identities = 29/65 (44%), Positives = 41/65 (63%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 + FS+YIK G+ AD +E LYKK HA IR +P K K+ K KR+N KL+ EQ+K Sbjct: 219 KKQFSQYIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKD 277 Query: 299 SLVER 285 + ++ Sbjct: 278 RVAQK 282
>RL5B_XENLA (P15126) 60S ribosomal protein L5-B| Length = 295 Score = 56.6 bits (135), Expect = 3e-08 Identities = 28/65 (43%), Positives = 41/65 (63%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 + FS+YIK G+ AD +E +YKK HA IR +P K K+ K KR+N KL+ EQ+K Sbjct: 219 KKQFSQYIKNGVAADQLEDIYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKD 277 Query: 299 SLVER 285 + ++ Sbjct: 278 RVAQK 282
>RL5_CAEEL (P49405) 60S ribosomal protein L5| Length = 293 Score = 54.7 bits (130), Expect = 1e-07 Identities = 26/62 (41%), Positives = 42/62 (67%) Frame = -1 Query: 470 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLV 291 FS+++ G+ AD + A Y+KVH+AIRAD + A K+ K KR+ K+LTY++RK + Sbjct: 222 FSKFLAAGLNADNLVATYQKVHSAIRADASPA--AKKAAKPSKRHTAKRLTYDERKQRVA 279 Query: 290 ER 285 ++ Sbjct: 280 DK 281
>RL5_CHICK (P22451) 60S ribosomal protein L5| Length = 296 Score = 54.3 bits (129), Expect = 2e-07 Identities = 28/65 (43%), Positives = 38/65 (58%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 + FS+YIK I DGME +YKK HAAIR +P K K K KR N K++ Q+K Sbjct: 219 KKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVK-KKRVNSTKMSLAQKKD 277 Query: 299 SLVER 285 + ++ Sbjct: 278 RVAQK 282
>RL5_DUNSA (O22608) 60S ribosomal protein L5| Length = 271 Score = 53.1 bits (126), Expect = 4e-07 Identities = 23/51 (45%), Positives = 34/51 (66%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPK 327 Q+HFS Y++ IE DG+E +YK+VHA IR +P K + P KR++P+ Sbjct: 218 QAHFSSYVENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWSPQ 268
>RL5_MACFA (Q4R5M0) 60S ribosomal protein L5| Length = 296 Score = 52.8 bits (125), Expect = 5e-07 Identities = 26/65 (40%), Positives = 39/65 (60%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 + FS+YIK + D ME +YKK HAAIR +P K K+ K KR+N K++ Q+K Sbjct: 219 KKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKD 277 Query: 299 SLVER 285 + ++ Sbjct: 278 RVAQK 282
>RL5_HUMAN (P46777) 60S ribosomal protein L5| Length = 296 Score = 52.8 bits (125), Expect = 5e-07 Identities = 26/65 (40%), Positives = 39/65 (60%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 + FS+YIK + D ME +YKK HAAIR +P K K+ K KR+N K++ Q+K Sbjct: 219 KKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKD 277 Query: 299 SLVER 285 + ++ Sbjct: 278 RVAQK 282
>RL5_RAT (P09895) 60S ribosomal protein L5| Length = 296 Score = 52.4 bits (124), Expect = 6e-07 Identities = 26/65 (40%), Positives = 38/65 (58%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 + FS+YIK + D ME +YKK HAAIR +P K K K KR+N K++ Q+K Sbjct: 219 KKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKD 277 Query: 299 SLVER 285 + ++ Sbjct: 278 RVAQK 282
>RL5_MOUSE (P47962) 60S ribosomal protein L5| Length = 296 Score = 52.4 bits (124), Expect = 6e-07 Identities = 26/65 (40%), Positives = 38/65 (58%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKA 300 + FS+YIK + D ME +YKK HAAIR +P K K K KR+N K++ Q+K Sbjct: 219 KKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKD 277 Query: 299 SLVER 285 + ++ Sbjct: 278 RVAQK 282
>RL5B_SCHPO (O74306) 60S ribosomal protein L5-B| Length = 294 Score = 47.4 bits (111), Expect = 2e-05 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEP---PKTHKRYNPKKLTYEQ 309 Q FS I GIE+D +E +Y + +A IR DP+ KS K+ +Y +KLT E+ Sbjct: 220 QKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEE 279 Query: 308 RKASLVERLNA 276 RK ER NA Sbjct: 280 RK----ERFNA 286
>RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosomal 5S| RNA-binding protein) Length = 296 Score = 45.8 bits (107), Expect = 6e-05 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Frame = -1 Query: 470 FSEYIKKGIEADGMEALYKKVHAAIRAD----PTIAKSTKEP-PKTHKRYNPKKLTYEQR 306 F Y+ I+AD +E +Y H AIRAD PT K TKE K+Y KL+ E+R Sbjct: 222 FKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEER 281 Query: 305 KASLVERLNAL 273 A + ++ AL Sbjct: 282 AARVAAKIAAL 292
>RL5A_SCHPO (P52822) 60S ribosomal protein L5-A| Length = 294 Score = 45.4 bits (106), Expect = 8e-05 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = -1 Query: 479 QSHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEP---PKTHKRYNPKKLTYEQ 309 Q FS I GIE+D +E +Y + +A IR DP+ KS K+ ++ +KLT E+ Sbjct: 220 QKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEE 279 Query: 308 RKASLVERLNA 276 RK ER NA Sbjct: 280 RK----ERFNA 286
>RL5_ANOGA (O44248) 60S ribosomal protein L5| Length = 327 Score = 36.6 bits (83), Expect = 0.035 Identities = 16/29 (55%), Positives = 21/29 (72%) Frame = -1 Query: 470 FSEYIKKGIEADGMEALYKKVHAAIRADP 384 FS+YI GI+AD +E +YK HA+IR P Sbjct: 223 FSKYISLGIKADDIENIYKNAHASIRKIP 251
>QUEA_BACSK (Q5WHR3) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -1 Query: 473 HFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRY 336 HFSE + IEA G++ +Y +H + ++ S+ E + H Y Sbjct: 183 HFSEQLLLEIEAKGVKIVYITLHVGLGTFRPVSASSVEDHQMHAEY 228
>RL5_RABIT (P19949) 60S ribosomal protein L5 (Fragments)| Length = 101 Score = 29.6 bits (65), Expect = 4.3 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = -1 Query: 461 YIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 285 Y +K + HAAIR +P K K K KR+N K++ Q+K + ++ Sbjct: 30 YARKRLVIQDKNKYNTPAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQK 87
>QUEA_LISIN (Q92BI3) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 29.3 bits (64), Expect = 5.6 Identities = 18/72 (25%), Positives = 33/72 (45%) Frame = -1 Query: 473 HFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASL 294 HF+E + I A G+E ++ +H + + + K H + +LT E Sbjct: 183 HFTEELLAQISAKGVEIIFVTLHVGLGTFRPVDVEDTQNHKMHSEF--YRLTEES----- 235 Query: 293 VERLNALNSSGG 258 +R+N + S+GG Sbjct: 236 ADRINKIKSAGG 247
>RPB9_YEAST (P27999) DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6)| (DNA-directed RNA polymerase II 14.2 kDa polypeptide) (B12.6) Length = 122 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 398 IRADPTIAKSTKEPPKTHKRYNPKKLTYEQRK 303 I +DPT+ +S +E PK H R N + ++RK Sbjct: 62 IGSDPTLPRSDRECPKCHSRENVFFQSQQRRK 93
>RPB9_CANGA (Q6FS48) DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6)| Length = 122 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 398 IRADPTIAKSTKEPPKTHKRYNPKKLTYEQRK 303 I +DPT+ +S +E PK H R N + ++RK Sbjct: 62 IGSDPTLPRSDRECPKCHSRENVFFQSQQRRK 93
>NU4M_CERCA (Q34048) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 446 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 324 LLGIVPLVRLWWFLG*FCYCRISTNGSMNLL 416 LL +P + LWWFL C ++ S+NLL Sbjct: 336 LLNFMPSMTLWWFL--LSVCNMAAPPSLNLL 364 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,685,159 Number of Sequences: 219361 Number of extensions: 1183590 Number of successful extensions: 3249 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3241 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
