ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21c06 |
|---|---|
| Clone Library Name | barley_pub |
>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 421 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -2 Query: 455 DDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 315 DD +R PD+ LGW P PL++ L T+ Y K + Q Sbjct: 357 DDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKELEHQANNQ 403
>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 33.5 bits (75), Expect = 0.27 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -2 Query: 455 DDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 315 DD KR PD+ LGW P PL++ L + Y K + Q Sbjct: 356 DDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402
>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 33.5 bits (75), Expect = 0.27 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -2 Query: 455 DDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 315 DD KR PD+ LGW P PL++ L + Y K + Q Sbjct: 356 DDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402
>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 33.5 bits (75), Expect = 0.27 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -2 Query: 455 DDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 315 DD KR PD+ LGW P PL++ L + Y K + Q Sbjct: 356 DDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402
>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 33.5 bits (75), Expect = 0.27 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -2 Query: 455 DDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 315 DD KR PD+ LGW P PL++ L + Y K + Q Sbjct: 356 DDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402
>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 418 Score = 33.1 bits (74), Expect = 0.35 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -2 Query: 455 DDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 315 DD +R PD+ LGW P PL++ L T+ Y + + Q Sbjct: 354 DDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSRELEHQANNQ 400
>ARNA_WIGBR (Q8D341) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 654 Score = 32.0 bits (71), Expect = 0.78 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -2 Query: 458 YDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 351 Y D D+R P++ + K L W PKT ++ L + + Sbjct: 612 YQDIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINF 647
>GNL1_PANTR (Q7YR35) Guanine nucleotide-binding protein-like 1 (GTP-binding| protein HSR1) Length = 430 Score = 31.2 bits (69), Expect = 1.3 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%) Frame = -1 Query: 378 GPAGDDSDLPAQDLQGSCQ-------DADVSGHGDAVKLDDDGTSASATAL 247 GPAGD+ + ++L SC+ DAD G GD ++ TSA ++L Sbjct: 370 GPAGDEEEEEEEELSSSCEEEGEEDRDADEEGEGD----EETPTSAPGSSL 416
>GNL1_HUMAN (P36915) Guanine nucleotide-binding protein-like 1 (GTP-binding| protein HSR1) Length = 430 Score = 31.2 bits (69), Expect = 1.3 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%) Frame = -1 Query: 378 GPAGDDSDLPAQDLQGSCQ-------DADVSGHGDAVKLDDDGTSASATAL 247 GPAGD+ + ++L SC+ DAD G GD ++ TSA ++L Sbjct: 370 GPAGDEEEEEEEELSSSCEEEGEEDRDADEEGEGD----EETPTSAPGSSL 416
>YAGE_SCHPO (Q9UTN4) Hypothetical WD-repeat protein C12G12.14c in chromosome I| Length = 509 Score = 30.8 bits (68), Expect = 1.7 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Frame = -1 Query: 429 HDPDQQAARVEPQDPSQGPAGDDSDLPAQDLQGSCQDADVSGHGDAVKLDD----DGTSA 262 H+ + + P D A DD L + S ++ ++GHG VK D G A Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVWNFHMSTEELKLTGHGWDVKTVDWHPSKGLLA 222 Query: 261 SATA--LLIFWKPDTDVIV 211 S + L+ FW P T + Sbjct: 223 SGSKDNLVKFWDPRTGTCI 241
>SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)| Length = 1695 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = -1 Query: 441 EDPRHDPDQQAARVEPQ----DPSQGPAGDDSDLPAQDLQGSCQDADVSG 304 E P +PD+QA V+ PS+GPA ++ P +DL + D G Sbjct: 704 ETPDEEPDEQAEVVDTDMAAAAPSEGPAPLEASAPLEDLVAIDKRGDAMG 753
>GNL1_MOUSE (P36916) Guanine nucleotide-binding protein-like 1 (GTP-binding| protein MMR1) Length = 430 Score = 30.0 bits (66), Expect = 2.9 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Frame = -1 Query: 378 GPAGDDSDLPAQDLQGSCQ-------DADVSGHGDAVKLDDDGTSASATAL 247 GPAGD+ + ++L SC+ DAD G GD +D TS + L Sbjct: 370 GPAGDEEEEEEEELSSSCEEEGEEDRDADEEGEGD----EDTPTSDPGSCL 416
>COA1_POVBK (P03088) Coat protein VP1| Length = 362 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +1 Query: 61 NVTNTATTGMIDTQILGPFC 120 +VTNTATT ++D Q +GP C Sbjct: 236 HVTNTATTVLLDEQGVGPLC 255
>COA1_POVBA (P14996) Coat protein VP1| Length = 362 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +1 Query: 61 NVTNTATTGMIDTQILGPFC 120 +VTNTATT ++D Q +GP C Sbjct: 236 HVTNTATTVLLDEQGVGPLC 255
>Y277_MYCGE (Q49409) Hypothetical protein MG277| Length = 970 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -1 Query: 366 DDSDLPAQDLQGSCQDADVSGHGDAVKLDDDGTSASATALLIFWK 232 + +L + D A V G+G K + +GTS+S L+ WK Sbjct: 237 NSKNLSSSDYNTGNGQASVEGNGKFFKQNANGTSSSGNKTLVLWK 281
>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1290 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -1 Query: 444 QEDPRHDPDQQAARVEPQDPSQGPAGDDSDLPAQDLQ 334 Q+ PR P P D S+ PAG +DLP D Q Sbjct: 864 QQHPRQPP--------PSDSSESPAGQKADLPCHDPQ 892
>PPME1_CRYNE (Q5KBD8) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)| Length = 422 Score = 29.3 bits (64), Expect = 5.0 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -1 Query: 363 DSDLPAQDLQGSCQDADVSGHGDAVKLDDDGTSASATALLIFWKPDTDVIVKPP 202 D +L +QG Q +S G L +D + A L+ FW +T V+V PP Sbjct: 349 DRELMVGQMQGKFQLEVMSDVGHY--LHEDNPAGLAATLITFWHRNTRVLVLPP 400
>COA1_SV40 (P03087) Coat protein VP1| Length = 364 Score = 29.3 bits (64), Expect = 5.0 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = +1 Query: 61 NVTNTATTGMIDTQILGPFC 120 ++TNTATT ++D Q +GP C Sbjct: 238 HITNTATTVLLDEQGVGPLC 257
>SN114_YEAST (P36048) 114 kDa U5 small nuclear ribonucleoprotein component| (GIN10 protein) Length = 1008 Score = 29.3 bits (64), Expect = 5.0 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = -2 Query: 452 DSDKRIPDMTLINKQLGWNPKTPLKDL 372 DS KRIPDM+ N +LGW P L +L Sbjct: 156 DSHKRIPDMSK-NVELGWKPLRYLDNL 181
>MRGX1_HUMAN (Q96LB2) Mas-related G-protein coupled receptor member X1 (Sensory| neuron-specific G-protein coupled receptor 4) Length = 322 Score = 28.9 bits (63), Expect = 6.6 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Frame = -3 Query: 181 LDPTTHLLSYLDSSLCNPISGKRDRV--SEYLSYLWWQCLLRLVGCTSRAILLLLV 20 +DPT +S LD+ L PI+G + + + LS C++ LVG T A++L L+ Sbjct: 1 MDPT---ISTLDTEL-TPINGTEETLCYKQTLSLTVLTCIVSLVGLTGNAVVLWLL 52
>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 1) (OsGME-1) Length = 378 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/42 (45%), Positives = 22/42 (52%) Frame = -2 Query: 440 RIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 315 R D TLI ++LGW P LKD L T + K E KTQ Sbjct: 307 RNSDNTLIKEKLGWAPTMKLKDGLRFTY-FWIKEQIEKEKTQ 347
>CLIC6_RAT (Q811Q2) Chloride intracellular channel 6| Length = 612 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -1 Query: 408 ARVEPQDPSQGPAGDDSDLPAQDLQGSCQDADVSGHGDAVKLDDDGTSASA 256 AR EP+DP AG++++ + L GS ++ ++ D+ T A A Sbjct: 142 ARREPEDPKASEAGEEAESGQEALGGSAPESQINPEVQGPVGDNMDTEAPA 192
>ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA protein (Polymyxin| resistance protein pmrI) [Includes: UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1 Length = 660 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -2 Query: 458 YDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 351 Y D R P + + LGW P ++D +E TL + Sbjct: 613 YQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648
>ARNA_SALCH (P0C0R6) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -2 Query: 458 YDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 351 Y D R P + + LGW P ++D +E TL + Sbjct: 613 YQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648
>HEMA_IADNY (P04660) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain] (Fragment) Length = 100 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 55 QPNVTNTATTGMIDTQILGPFCPI*GYTTTNLGKIRDGWWDL 180 + NVT T++ +++T+ G FC I G +LG W L Sbjct: 37 ESNVTVTSSVELVETEHTGSFCSINGKQPISLGDCSFAGWIL 78
>CT077_MOUSE (Q9CSU0) Protein C20orf77 homolog| Length = 326 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -1 Query: 459 VRRQ*QEDPRHDPDQQAARVEPQDPSQGPAGDDSDLPAQDLQGSCQDADVSGHGDA 292 ++R Q+ + D PQDPS GP L ++L + QD + + GDA Sbjct: 146 LKRTFQQIQEEEDDDYPGSYSPQDPSAGP------LLTEELIKALQDLENAASGDA 195
>CT077_HUMAN (Q9NQG5) Protein C20orf77| Length = 326 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -1 Query: 459 VRRQ*QEDPRHDPDQQAARVEPQDPSQGPAGDDSDLPAQDLQGSCQDADVSGHGDA 292 ++R Q+ + D PQDPS GP L ++L + QD + + GDA Sbjct: 146 LKRTFQQIQEEEDDDYPGSYSPQDPSAGP------LLTEELIKALQDLENAASGDA 195
>BMP4_XENLA (P30885) Bone morphogenetic protein 4 precursor (BMP-4)| Length = 401 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = +3 Query: 27 SKRIAREVQPTKRNKHC--HHRYDRYSD 104 SKR ++ +P K+NKHC H Y +SD Sbjct: 285 SKRSPKQQRPRKKNKHCRRHSLYVDFSD 312
>SNSR5_HUMAN (Q8TDD7) Sensory neuron-specific G-protein coupled receptor 5| Length = 322 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Frame = -3 Query: 181 LDPTTHLLSYLDSSLCNPISGKRDR--VSEYLSYLWWQCLLRLVGCTSRAILLLLV 20 +DPT +L + PI+G+ + + LS+ C++ LVG T A++L L+ Sbjct: 1 MDPTVPVLG----TKLTPINGREETPCYKQTLSFTVLTCIISLVGLTGNAVVLWLL 52
>SNSR3_HUMAN (Q8TDD9) Sensory neuron-specific G-protein coupled receptor 3| Length = 322 Score = 28.5 bits (62), Expect = 8.6 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Frame = -3 Query: 181 LDPTTHLLSYLDSSLCNPISGKRDRV--SEYLSYLWWQCLLRLVGCTSRAILLLLV 20 +DPT +S LD+ L PI+G + + + LS C++ LVG T A++L L+ Sbjct: 1 MDPT---VSTLDTEL-TPINGTEETLCYKQTLSLTVLTCIVSLVGLTGNAVVLWLL 52
>HEMA_IADU1 (P04659) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain] (Fragment) Length = 100 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 61 NVTNTATTGMIDTQILGPFCPI*GYTTTNLGKIRDGWWDL 180 NVT T++ +++T+ G FC I G +LG W L Sbjct: 39 NVTVTSSVELVETEHTGSFCSINGKQPISLGDCSFAGWIL 78
>HEMA_IADE1 (P04661) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 565 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 61 NVTNTATTGMIDTQILGPFCPI*GYTTTNLGKIRDGWWDL 180 NVT T++ +++T+ G FC I G +LG W L Sbjct: 39 NVTVTSSVELVETEHTGSFCSINGKQPISLGDCSFAGWIL 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,929,428 Number of Sequences: 219361 Number of extensions: 1222408 Number of successful extensions: 4175 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3999 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4170 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
