>CBPA1_RAT (P00731) Carboxypeptidase A1 precursor (EC 3.4.17.1)|
          Length = 419

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 99  HPHLRVSSLGETKSTKVKELYNLQHIHLD 185
           H  LR+S+  E +  KVKEL +L+H+ LD
Sbjct: 23  HQVLRISAADEAQVQKVKELEDLEHLQLD 51

>CBPA1_HUMAN (P15085) Carboxypeptidase A1 precursor (EC 3.4.17.1)|
          Length = 419

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 99  HPHLRVSSLGETKSTKVKELYNLQHIHLD 185
           H  LR+S   E +  KVKEL +L+H+ LD
Sbjct: 23  HQVLRISVADEAQVQKVKELEDLEHLQLD 51

>TERM_ADEB2 (O55438) DNA terminal protein (Bellett protein) (pTP protein)|
          Length = 620

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 246 VYRMKGRNGQDAWSYLYTYNGQDVCVVDCIVLSLWWI 136
           V R +  +GQ  +S     NG  V V  C+ L+L W+
Sbjct: 481 VMRARNEDGQIVYSRARNENGNTVLVTSCLALALTWL 517

>EFG1_CANAL (P43064) Enhanced filamentous growth protein|
          Length = 552

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/55 (41%), Positives = 29/55 (52%)
 Frame = +2

Query: 17  YSDDQEQQSSLNKQTNLQQI*SDQTRTSPAFTGQFTR*NQIHQSERTIQSTTHTS 181
           Y   Q+QQ    +Q N QQ  SDQ +TS    G  TR   +HQS + +QS T  S
Sbjct: 480 YPYQQQQQKQQQQQPNQQQQ-SDQQQTSTPSGGAGTR--SVHQSPQ-VQSLTQGS 530

>HCN1_MOUSE (O88704) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1 (Brain cyclic nucleotide
           gated channel 1) (BCNG-1) (Hyperpolarization-activated
           cation channel 2) (HAC-2)
          Length = 910

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 29  QEQQSSLNKQTNLQQI*SDQTRTSPAFTGQFTR*NQIHQSERTIQSTTHT 178
           Q+QQ    +Q   QQ    Q +  P   G  T  N++H+S + + +T  T
Sbjct: 752 QQQQQQQQQQQQQQQQQQQQQQQQPQTPGSSTPKNEVHKSTQALHNTNLT 801

>CBPA1_MOUSE (Q7TPZ8) Carboxypeptidase A1 precursor (EC 3.4.17.1)|
          Length = 419

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 99  HPHLRVSSLGETKSTKVKELYNLQHIHLD 185
           H  LR+S+  E +  KV+EL  L+H+ LD
Sbjct: 23  HQVLRISATDEAQVQKVRELEELEHLKLD 51

>CBPA1_PIG (P09954) Carboxypeptidase A1 precursor (EC 3.4.17.1)|
          Length = 419

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 99  HPHLRVSSLGETKSTKVKELYNLQHIHLD 185
           H  LR+S   E +  KVKEL +L+H+ LD
Sbjct: 23  HQVLRISVDDEAQVQKVKELEDLEHLQLD 51

>VD09_SFVKA (P32098) Protein D9|
          Length = 218

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 87  KHELHPHLRVSSLGET--KSTKVKELYNLQHIHLDRCMYINTTMHLDRSFLSYGIRLQ 254
           K E    L + S+G T  K T   +L+N ++++  +  YI+  M    SF+ Y + ++
Sbjct: 133 KEETDSKLTIKSIGTTCVKITITDKLFNRKYVNYCKLCYIDELMEEVISFVIYNVEIR 190

>NHR34_CAEEL (Q21006) Nuclear hormone receptor family member nhr-34|
          Length = 605

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 253 WSRIPYERKERSRCMVVFIYIQRSRCMCCRLYSSFTL 143
           W +  Y  +   +C+VV  Y  R+RC  CRL   FT+
Sbjct: 154 WEQRDYVCRFGGKCLVVQEY--RNRCRACRLRKCFTV 188

>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)|
          Length = 1195

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 229 KERSRCMVVFIYIQRSRCMCCRLYSSFTLVDLVSP--SELTRKCG 101
           +E    + V+ Y    +C  C  Y   ++VD V+P  SE+T +CG
Sbjct: 651 EEEDTYVAVYAYDIPEKCPHCNSYLYRSMVDWVNPGESEITLECG 695

>RECF_STRR6 (Q8DMX3) DNA replication and repair protein recF|
          Length = 365

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 123 LGETKSTKVKELYNLQHIHLDRCMYINTTMHLDRSFLS 236
           LG+ K   + +L N  HI   R  Y+ +   +D +FLS
Sbjct: 139 LGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLS 176

>RECF_STRPN (Q97N44) DNA replication and repair protein recF|
          Length = 365

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 123 LGETKSTKVKELYNLQHIHLDRCMYINTTMHLDRSFLS 236
           LG+ K   + +L N  HI   R  Y+ +   +D +FLS
Sbjct: 139 LGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLS 176

>DNJC4_MOUSE (Q9D844) DnaJ homolog subfamily C member 4 (Multiple endocrine|
           neoplasia type 1 candidate protein number 18 homolog)
          Length = 244

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 22  RRSGTTIQPK*TNKSPTNLK*PNTNFTRIYGSVHSVKPNPPK 147
           + SG+T +PK T ++ ++ + PN  +   +   HSV+P  P+
Sbjct: 109 KSSGSTAEPKYTQQTHSSWEPPNAQY---WAQFHSVRPQGPE 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,838,311
Number of Sequences: 219361
Number of extensions: 1162716
Number of successful extensions: 2973
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2973
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)