ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21b08 |
|---|---|
| Clone Library Name | barley_pub |
>GSTU1_ORYSA (O65032) Probable glutathione S-transferase GSTU1 (EC 2.5.1.18)| Length = 231 Score = 39.7 bits (91), Expect = 0.002 Identities = 15/19 (78%), Positives = 19/19 (100%) Frame = -3 Query: 402 SPEKVYDFIGLLKKRYGIE 346 SPEKVYDF+G+LKK+YG+E Sbjct: 213 SPEKVYDFVGVLKKKYGVE 231
>CYAA_DICDI (Q03100) Adenylate cyclase, aggregation specific (EC 4.6.1.1) (ATP| pyrophosphate-lyase) (Adenylyl cyclase) Length = 1407 Score = 32.0 bits (71), Expect = 0.36 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +3 Query: 60 GIAGGNSVLPPPKTRVDT*HTHRAGEHNTHPHCLTQPYTTNHSHANN 200 G GG + P +++ + HN HP+ L+ P+ NH++ N+ Sbjct: 68 GGGGGGGHINPMHLNLNSITNNHNNHHNHHPNTLSTPHNNNHNNNNH 114
>CNG_ICTPU (P55934) Cyclic nucleotide-gated cation channel| Length = 682 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Frame = +1 Query: 91 HRRPGLTHDTHIEQEST-TRTHTA*PNHILPTTHTRTIYSTNKE 219 H GL D E E THT H P THTRT TN E Sbjct: 636 HTGLGLLSDNEAEGEHAGVPTHTHADIHAQPETHTRTSAETNSE 679
>GPI16_SCHPO (O94380) GPI transamidase component PIG-T homolog precursor| Length = 545 Score = 29.3 bits (64), Expect = 2.3 Identities = 22/74 (29%), Positives = 29/74 (39%) Frame = +3 Query: 54 RNGIAGGNSVLPPPKTRVDT*HTHRAGEHNTHPHCLTQPYTTNHSHANNLFH**RKKYPN 233 RNG G + PP + H E HCL Y+T H ++LFH K P Sbjct: 247 RNGRRKGKTTFQPPSE-----YCH--DEDMDSLHCLMSGYSTEHHTVDDLFH----KVPK 295 Query: 234 ARTAGHPNRSIIFI 275 R S +F+ Sbjct: 296 ERCLLSSTFSDVFV 309
>LOLA4_DROME (Q867Z4) Longitudinals lacking protein, isoforms F/I/K/T| Length = 970 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/92 (22%), Positives = 35/92 (38%) Frame = +1 Query: 88 PHRRPGLTHDTHIEQESTTRTHTA*PNHILPTTHTRTIYSTNKERNIQTHALQATQIAP* 267 PH + H HI Q + H + T H + T+++ + Q H Q + P Sbjct: 588 PHTSSTIIHPHHIIQHVSQEPHHQEHHQQHQTIHIEEVPQTSQQHHQQQHHHQLQTVQPT 647 Query: 268 FLSVASFRQAGRPAGLRVHGGPPARLLDAVPL 363 V S A + + G +L D+ P+ Sbjct: 648 HTQVQSIITAHPGQTINLVGLRNVQLADSKPI 679
>UHPB_SALTY (P27668) Sensor protein uhpB (EC 2.7.13.3)| Length = 500 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -2 Query: 208 WNKLFACEWLVVYGWVRQCGCVLCSPALCVCHVSTLVFGGGSTELPPAIPFLY 50 W L EWL+VY W+ Q + + H+ L+ G T LP A+ Y Sbjct: 60 WPVLLGAEWLLVY-WLAQ--------EVALAHLPLLMIGSVLTLLPVALTSRY 103
>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 914 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/27 (33%), Positives = 19/27 (70%) Frame = -3 Query: 264 WSDLGGLQCVRLDISFFISGINCSRVS 184 W++ G L C+ D S+F+ G++ ++V+ Sbjct: 472 WNESGSLVCLATDDSYFVLGVDTAQVA 498
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +2 Query: 236 THCRPPKSLHNFYL*LPSGRPAGRPACACMAVRRRAYSMPY 358 +HCRP H+F+L + P G C CM V ++ S Y Sbjct: 1305 SHCRP----HHFHL--SASNPEGCLPCFCMGVTQQCASSSY 1339
>DHPH_BACBA (Q59224) Phenylalanine dehydrogenase (EC 1.4.1.20) (PheDH)| Length = 380 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -2 Query: 124 CVCHVSTLVFGGGSTELPPAIPFLYPLHAMNKL 26 C+ V GGG + +P A+ LY + A NK+ Sbjct: 142 CIVGVPEAYGGGGDSSIPTAMGVLYGIKATNKM 174
>DFD_DROME (P07548) Homeotic protein deformed| Length = 586 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 8/74 (10%) Frame = +3 Query: 60 GIAGGNSVLPPPKTRVDT*HTHRAGEHNTHPHCLTQPYTTNHSHANNLFH**RK------ 221 G AGG + P D + A HN H H + ++ H H+N+ + Sbjct: 68 GGAGGMTGHPHSMHPADMVSDYMAHHHNPHSHSHSHTHSLPHHHSNSAISGHHQASAGGY 127 Query: 222 --KYPNARTAGHPN 257 Y NA HP+ Sbjct: 128 SSNYANATPPSHPH 141
>LOZEN_DROME (Q9W349) Protein lozenge| Length = 826 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/46 (30%), Positives = 17/46 (36%) Frame = +3 Query: 117 HTHRAGEHNTHPHCLTQPYTTNHSHANNLFH**RKKYPNARTAGHP 254 H H H+ P+ PY H HA + H YP HP Sbjct: 107 HHHHHLHHHYSPYHHAHPYHPPHPHAPHHHHHHHPPYPYPPAGPHP 152
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = -3 Query: 309 GRPAGLPEGSYR*KLWSDL-GGLQCV 235 G PA P GS R LWSDL GGL + Sbjct: 1106 GLPASRPGGSRREPLWSDLKGGLSAL 1131
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = -3 Query: 309 GRPAGLPEGSYR*KLWSDL-GGLQCV 235 G PA P GS R LWSDL GGL + Sbjct: 1106 GLPASRPGGSRREPLWSDLKGGLSAL 1131
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = -3 Query: 309 GRPAGLPEGSYR*KLWSDL-GGLQCV 235 G PA P GS R LWSDL GGL + Sbjct: 1106 GLPASRPGGSRREPLWSDLKGGLSAL 1131
>TMC6_HUMAN (Q7Z403) Transmembrane channel-like protein 6 (Epidermodysplasia| verruciformis protein 1) (Protein LAK-4) Length = 805 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -3 Query: 180 W*YMVGSGSVGACCALLLYVCVM 112 W GSG V +CC L Y CV+ Sbjct: 189 WRGQPGSGGVCSCCGRLRYACVL 211
>ALS3_CANAL (O74623) Agglutinin-like protein 3 precursor| Length = 1119 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 36 IAWSGYRNGIAGGNSVLPPPKTRVDT 113 + W+GYRN AG N ++ TR T Sbjct: 310 LRWTGYRNSDAGSNGIVIVATTRTVT 335
>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)| (HRPI) (Fragment) Length = 473 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Frame = +3 Query: 12 THSLLNLFIAW-----SGYRNGIAGGNSV-LPPPKTRVDT*HTHRAGEHNTHPHCLTQPY 173 T LL F+ W + NG G+S +T H H H+ H H P+ Sbjct: 20 TKILLVSFLVWVLKCSNNCNNGNGSGDSFDFRNKRTLAQKQHEHHHHHHHQHQHQHQAPH 79 Query: 174 TTNHSH 191 +H H Sbjct: 80 QAHHHH 85
>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)| (KP) Length = 634 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Frame = +3 Query: 12 THSLLNLFIAW-----SGYRNGIAGGNSV-LPPPKTRVDT*HTHRAGEHNTHPHCLTQPY 173 T LL F+ W + NG G+S +T H H H+ H H P+ Sbjct: 20 TKILLVSFLVWVLKCSNNCNNGNGSGDSFDFRNKRTLAQKQHEHHHHHHHQHQHQHQAPH 79 Query: 174 TTNHSH 191 +H H Sbjct: 80 QAHHHH 85
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)| [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 263 HNFYL*LPSGRPAGRPACACMA 328 HN L LPS +P P CAC++ Sbjct: 1093 HNGGLCLPSPKPGSPPLCACLS 1114
>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP-dependent| isoleucine adenylase (IleA) (Isoleucine activase); ATP-dependent cysteine adenylase (CysA) (Cysteine activase); ATP-dependent leucine adenylase (LeuA) (Leucine activase); ATP-depe Length = 5255 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = -3 Query: 375 GLLKKRYGIE*ARRRTAMHAQAGRPAGLPEGSYR*KL---WSDLGGLQCVRLDISFFISG 205 G + KR + A + TA Q G LPE + L W D+ GL + LD+S++ G Sbjct: 1554 GKVDKRTLHDLAEQHTADEGQRGGRM-LPENETQAMLLEIWKDIFGLDSINLDVSYYEIG 1612 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,039,915 Number of Sequences: 219361 Number of extensions: 1435964 Number of successful extensions: 3910 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3749 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3894 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
