ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21b06 |
|---|---|
| Clone Library Name | barley_pub |
>TS101_RAT (Q6IRE4) Tumor susceptibility gene 101 protein| Length = 391 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/53 (41%), Positives = 33/53 (62%) Frame = -3 Query: 307 QRLECAAMDLALEDTMYALDEAVQGGAVPFSGYLRSVRALAREQFFQRALWSK 149 Q L A + A+EDT++ L EA++ G + +L+ VR L+R+QF RAL K Sbjct: 328 QILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQK 380
>TS101_MOUSE (Q61187) Tumor susceptibility gene 101 protein| Length = 391 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/53 (41%), Positives = 33/53 (62%) Frame = -3 Query: 307 QRLECAAMDLALEDTMYALDEAVQGGAVPFSGYLRSVRALAREQFFQRALWSK 149 Q L A + A+EDT++ L EA++ G + +L+ VR L+R+QF RAL K Sbjct: 328 QILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQK 380
>TS101_HUMAN (Q99816) Tumor susceptibility gene 101 protein| Length = 390 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/53 (41%), Positives = 33/53 (62%) Frame = -3 Query: 307 QRLECAAMDLALEDTMYALDEAVQGGAVPFSGYLRSVRALAREQFFQRALWSK 149 Q L A + A+EDT++ L EA++ G + +L+ VR L+R+QF RAL K Sbjct: 327 QILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQK 379
>STP22_YEAST (P25604) Suppressor protein STP22 of temperature-sensitive| alpha-factor receptor and arginine permease (Vacuolar protein sorting-associated protein VPS23) Length = 385 Score = 35.0 bits (79), Expect = 0.079 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -3 Query: 307 QRLECAAMDLALEDTMYALDEAVQGGAVPFSGYLRSVRALAREQFFQR 164 Q A D AL DT+ L + G +P +++ R LAR+QF R Sbjct: 327 QLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVR 374
>BRE1_CRYNE (Q5KBI0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 820 Score = 31.2 bits (69), Expect = 1.1 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = +2 Query: 242 RLVQRVHGVLQRQI--HGRALEPLHRQRVRGLNCRPRLRVAVRGHRRP 379 R +QR+ L R+ HG+A E +R RG P LR GH P Sbjct: 204 RDLQRIRKALDRERMEHGKAQEEWKEERTRGGQATPNLRANGSGHSTP 251
>ISPH_CHLTR (O84867) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 307 Score = 30.0 bits (66), Expect = 2.5 Identities = 17/33 (51%), Positives = 18/33 (54%) Frame = -3 Query: 133 LFSFHGSKPSVLSSAAEKFRDLIFADVLCGLYT 35 +FS HG PSV A E R LI D CGL T Sbjct: 71 IFSAHGVPPSVREEAEE--RGLIAIDATCGLVT 101
>LEPA2_RHOBA (Q7UE01) GTP-binding protein lepA2| Length = 598 Score = 29.6 bits (65), Expect = 3.3 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = +2 Query: 224 HGPSL--HRLVQRVHGVLQRQIHGRALEPLHRQRVRGLNCR 340 HG S RL+Q GV QR+ H + L+ + +R RG+ + Sbjct: 15 HGKSTLADRLIQSCGGVTQREFHDQMLDSMDIERERGITIK 55
>ATG1_DEBHA (Q6BS08) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 875 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -1 Query: 180 NSFSSVLSGPNFARKVFFPSMEANLQSYLQLQKNSET 70 N+FS++LS PNFA + + NL + + NS+T Sbjct: 571 NTFSTILSNPNFANNLLIQKL--NLPTSATVANNSQT 605
>ISPH_CHLMU (Q9PL59) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 308 Score = 28.9 bits (63), Expect = 5.7 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -3 Query: 133 LFSFHGSKPSVLSSAAEKFRDLIFADVLCGLYT 35 ++S HG PSV A E R LI D CGL T Sbjct: 71 IYSAHGVPPSVREEAKE--RGLITIDATCGLVT 101
>MIAA_SHIFL (P59197) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 316 Score = 28.5 bits (62), Expect = 7.4 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +2 Query: 161 STLEKLFPR*RAHAPEVAAERHGPSLHRLVQRVHGVLQRQIHGRALEPLHR 313 S L P RA + AAE+ SLHR +Q V V +IH + L R Sbjct: 120 SPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSR 170
>MIAA_ECOLI (P16384) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 316 Score = 28.5 bits (62), Expect = 7.4 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +2 Query: 161 STLEKLFPR*RAHAPEVAAERHGPSLHRLVQRVHGVLQRQIHGRALEPLHR 313 S L P RA + AAE+ SLHR +Q V V +IH + L R Sbjct: 120 SPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSR 170
>DPOL_HBVWO (P17395) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 843 Score = 28.5 bits (62), Expect = 7.4 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Frame = +3 Query: 15 FYKSIGAVYNPHSTSAKIRSLNFSAAEDKTEGLLP----------WKEKRPF*QSLDQRA 164 F S+G NPH T SLNF + G LP W K P + +D Sbjct: 573 FLLSLGIHLNPHKTKRWGYSLNFMGYVIGSWGTLPQEHIVQKIKMWFRKLPVNRPID--- 629 Query: 165 RWKNCSR 185 WK C R Sbjct: 630 -WKVCQR 635
>MIAA_ECOL6 (Q8CXV3) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 316 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +2 Query: 161 STLEKLFPR*RAHAPEVAAERHGPSLHRLVQRVHGVLQRQIHGRALEPLHR 313 S L P RA + AAE+ SLHR +Q + V +IH + L R Sbjct: 120 SPLPSADPEVRARIEQQAAEQGWESLHRQLQEIDPVAAARIHPNDPQRLSR 170
>MIAA_ECO57 (Q8XDN3) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 316 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +2 Query: 161 STLEKLFPR*RAHAPEVAAERHGPSLHRLVQRVHGVLQRQIHGRALEPLHR 313 S L P RA + AAE+ SLHR +Q + V +IH + L R Sbjct: 120 SPLPSADPEVRARIEQQAAEQGWESLHRQLQEIDPVAAARIHPNDPQRLSR 170
>SMC7_SCHMA (P16641) ATP:guanidino kinase SMC74 (EC 2.7.3.-) (ATP:guanidino| phosphotransferase) Length = 675 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +2 Query: 134 TFLAKFGPESTLEKLFPR*RAHAPEVAAE------RHGPSLHRLVQRVHGVLQRQIH 286 T+LAK +++EK + R + PE+ + HG +L +++ VH ++ + +H Sbjct: 370 TYLAKLLEGASIEKCYTR-KYLTPEIIKKYDGKRTTHGATLAHMIRNVHTIIVQYVH 425
>MDTM_SALTY (Q7CP73) Multidrug resistance protein mdtM| Length = 413 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -3 Query: 280 LALEDTMYALDEAVQGGAVPFS--GYLRSVRALAREQFF 170 LAL + A+ E VQ GAVPFS LR R + R F Sbjct: 182 LALCGLLLAMPETVQRGAVPFSAVSVLRDFRNVFRNPIF 220
>MDTM_SALTI (Q8XFG0) Multidrug resistance protein mdtM| Length = 413 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -3 Query: 280 LALEDTMYALDEAVQGGAVPFS--GYLRSVRALAREQFF 170 LAL + A+ E VQ GAVPFS LR R + R F Sbjct: 182 LALCGLLLAMPETVQRGAVPFSAVSVLRDFRNVFRNPIF 220 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,631,580 Number of Sequences: 219361 Number of extensions: 780570 Number of successful extensions: 2399 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2356 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2399 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
