ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
2dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
3dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
4dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
5gb|BC007201.1| Homo sapiens obscurin-like 1, mRNA (cDNA clone IM... 48 0.024
6ref|XM_516111.1| PREDICTED: Pan troglodytes similar to obscurin,... 48 0.024
7gb|AC158240.5| Pan troglodytes BAC clone CH251-542M19 from chrom... 48 0.024
8ref|XM_938504.1| PREDICTED: Homo sapiens obscurin-like 1 (OBSL1)... 48 0.024
9ref|XM_051017.5| PREDICTED: Homo sapiens obscurin-like 1 (OBSL1)... 48 0.024
10gb|AC009955.4|AC009955 Homo sapiens BAC clone RP11-256I23 from 2... 48 0.024
11dbj|AB014557.2| Homo sapiens mRNA for KIAA0657 protein, partial cds 48 0.024
12dbj|AB196527.1| Amycolatopsis sp. #8 rac gene for aminoglycoside... 44 0.37
13ref|NM_203293.1| Homo sapiens tripartite motif-containing 7 (TRI... 42 1.5
14ref|NM_033342.2| Homo sapiens tripartite motif-containing 7 (TRI... 42 1.5
15ref|XM_363418.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.5
16gb|AF396651.1| Homo sapiens glycogenin-interacting protein 1 mRN... 42 1.5
17dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 42 1.5
18gb|AF220032.1|AF220032 Homo sapiens tripartite motif protein TRI... 42 1.5
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
20gb|AC008443.10| Homo sapiens chromosome 5 clone CTC-338M12, comp... 42 1.5
21dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
22dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
23emb|AJ336615.1|HSA336615 Homo sapiens genomic sequence surroundi... 42 1.5
24emb|AJ335609.1|HSA335609 Homo sapiens genomic sequence surroundi... 42 1.5
25gb|BC080553.1| Homo sapiens tripartite motif-containing 7, trans... 42 1.5
26gb|BC011567.1| Homo sapiens tripartite motif-containing 7, trans... 42 1.5
27gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.5
28gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 1.5
29gb|AC115011.27| Mus musculus chromosome 1, clone RP24-192A11, co... 40 5.8
30gb|AC112361.5| Rattus norvegicus 9 BAC CH230-61F12 (Children's H... 40 5.8
31gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.8
32gb|AC116787.10| Mus musculus chromosome 6, clone RP24-296D21, co... 40 5.8
33ref|NM_178884.2| Mus musculus expressed sequence AW822216 (AW822... 40 5.8
34gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 5.8
35gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 5.8
36ref|XM_807189.1| Trypanosoma cruzi strain CL Brener dispersed ge... 40 5.8
37gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.8
38gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Canc... 40 5.8
39gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.8
40gb|AE005872.1| Caulobacter crescentus CB15 section 198 of 359 of... 40 5.8
41gb|AC124960.26| Medicago truncatula clone mth2-26j24, complete s... 40 5.8
42gb|AC108467.5| Homo sapiens BAC clone RP11-362I1 from 4, complet... 40 5.8
43dbj|AK162473.1| Mus musculus 12 days embryo embryonic body betwe... 40 5.8
44gb|S56581.1| alpha inhibin gene {5' region} [rats, Genomic, 2141... 40 5.8
45dbj|AK034852.1| Mus musculus 12 days embryo embryonic body betwe... 40 5.8
46dbj|AK031074.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 40 5.8
47dbj|AK048144.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.8
48dbj|AK029863.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.8
49gb|AC017070.9| Homo sapiens BAC clone RP11-409F2 from 2, complet... 40 5.8
50ref|XM_343599.2| PREDICTED: Rattus norvegicus similar to sallimu... 40 5.8
51gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 5.8
52gb|AC092177.4| Homo sapiens BAC clone RP11-69D8 from 2, complete... 40 5.8
53emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.8
54emb|AL845166.8| Mouse DNA sequence from clone RP23-236H15 on chr... 40 5.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 168      tggaaaaactgttcccgcgctagcgcgcgcacgctccggaggtagcc 214
                ||||||||||| ||||| || ||||| |||||||||| |||||||||
Sbjct: 35855631 tggaaaaactgctcccgtgcaagcgctcgcacgctcctgaggtagcc 35855677
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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 168   tggaaaaactgttcccgcgctagcgcgcgcacgctccggaggtagcc 214
             ||||||||||| ||||| || ||||| |||||||||| |||||||||
Sbjct: 46177 tggaaaaactgctcccgtgcaagcgctcgcacgctcctgaggtagcc 46223
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>dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116E04, full
            insert sequence
          Length = 1547

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 168  tggaaaaactgttcccgcgctagcgcgcgcacgctccggaggtagcc 214
            ||||||||||| ||||| || ||||| |||||||||| |||||||||
Sbjct: 1214 tggaaaaactgctcccgtgcaagcgctcgcacgctcctgaggtagcc 1168
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>dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full
            insert sequence
          Length = 1562

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 168  tggaaaaactgttcccgcgctagcgcgcgcacgctccggaggtagcc 214
            ||||||||||| ||||| || ||||| |||||||||| |||||||||
Sbjct: 1229 tggaaaaactgctcccgtgcaagcgctcgcacgctcctgaggtagcc 1183
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>gb|BC007201.1| Homo sapiens obscurin-like 1, mRNA (cDNA clone IMAGE:2961284),
           partial cds
          Length = 3316

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 338 cgcccccgcctgcgcgtcgccgtgcgcg 365
           ||||||||||||||||| ||||||||||
Sbjct: 725 cgcccccgcctgcgcgtggccgtgcgcg 698
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>ref|XM_516111.1| PREDICTED: Pan troglodytes similar to obscurin, cytoskeletal
            calmodulin and titin-interacting RhoGEF (LOC459967), mRNA
          Length = 2253

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 338  cgcccccgcctgcgcgtcgccgtgcgcg 365
            ||||||||||||||||| ||||||||||
Sbjct: 1179 cgcccccgcctgcgcgtggccgtgcgcg 1152
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>gb|AC158240.5| Pan troglodytes BAC clone CH251-542M19 from chromosome unknown, complete
              sequence
          Length = 217064

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 338    cgcccccgcctgcgcgtcgccgtgcgcg 365
              ||||||||||||||||| ||||||||||
Sbjct: 108938 cgcccccgcctgcgcgtggccgtgcgcg 108965
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>ref|XM_938504.1| PREDICTED: Homo sapiens obscurin-like 1 (OBSL1), mRNA
          Length = 6260

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 338  cgcccccgcctgcgcgtcgccgtgcgcg 365
            ||||||||||||||||| ||||||||||
Sbjct: 1059 cgcccccgcctgcgcgtggccgtgcgcg 1032
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>ref|XM_051017.5| PREDICTED: Homo sapiens obscurin-like 1 (OBSL1), mRNA
          Length = 6260

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 338  cgcccccgcctgcgcgtcgccgtgcgcg 365
            ||||||||||||||||| ||||||||||
Sbjct: 1059 cgcccccgcctgcgcgtggccgtgcgcg 1032
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>gb|AC009955.4|AC009955 Homo sapiens BAC clone RP11-256I23 from 2, complete sequence
          Length = 135033

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 338   cgcccccgcctgcgcgtcgccgtgcgcg 365
             ||||||||||||||||| ||||||||||
Sbjct: 41456 cgcccccgcctgcgcgtggccgtgcgcg 41483
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>dbj|AB014557.2| Homo sapiens mRNA for KIAA0657 protein, partial cds
          Length = 5382

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 338 cgcccccgcctgcgcgtcgccgtgcgcg 365
           ||||||||||||||||| ||||||||||
Sbjct: 175 cgcccccgcctgcgcgtggccgtgcgcg 148
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>dbj|AB196527.1| Amycolatopsis sp. #8 rac gene for aminoglycoside
            6'-acetyltransferase, hypothetical protein, complete cds
          Length = 1859

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 235  cctgcaccgcctcgtccagcgcgtac 260
            ||||| ||||||||||||||||||||
Sbjct: 1819 cctgctccgcctcgtccagcgcgtac 1844
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>ref|NM_203293.1| Homo sapiens tripartite motif-containing 7 (TRIM7), transcript
           variant 1, mRNA
          Length = 2862

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 235 cctgcaccgcctcgtccagcg 255
           |||||||||||||||||||||
Sbjct: 581 cctgcaccgcctcgtccagcg 561
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>ref|NM_033342.2| Homo sapiens tripartite motif-containing 7 (TRIM7), transcript
           variant 6, mRNA
          Length = 1114

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 235 cctgcaccgcctcgtccagcg 255
           |||||||||||||||||||||
Sbjct: 581 cctgcaccgcctcgtccagcg 561
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>ref|XM_363418.1| Magnaporthe grisea 70-15 hypothetical protein (MG01344.4) partial
           mRNA
          Length = 810

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 241 ccgcctcgtccagcgcgtaca 261
           |||||||||||||||||||||
Sbjct: 316 ccgcctcgtccagcgcgtaca 296
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>gb|AF396651.1| Homo sapiens glycogenin-interacting protein 1 mRNA, complete cds
          Length = 2151

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 235 cctgcaccgcctcgtccagcg 255
           |||||||||||||||||||||
Sbjct: 574 cctgcaccgcctcgtccagcg 554
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 366    gccaccgtcgtccggttcgcc 386
              |||||||||||||||||||||
Sbjct: 898805 gccaccgtcgtccggttcgcc 898825
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>gb|AF220032.1|AF220032 Homo sapiens tripartite motif protein TRIM7 (TRIM7) mRNA, complete
           cds
          Length = 1230

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 235 cctgcaccgcctcgtccagcg 255
           |||||||||||||||||||||
Sbjct: 697 cctgcaccgcctcgtccagcg 677
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 336      gccgcccccgcctgcgcgtcgccgt 360
                |||||| ||||||||||||||||||
Sbjct: 24119626 gccgccgccgcctgcgcgtcgccgt 24119650
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>gb|AC008443.10| Homo sapiens chromosome 5 clone CTC-338M12, complete sequence
          Length = 120515

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 235   cctgcaccgcctcgtccagcg 255
             |||||||||||||||||||||
Sbjct: 25136 cctgcaccgcctcgtccagcg 25156
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>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417G12
          Length = 163568

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 336   gccgcccccgcctgcgcgtcgccgt 360
             |||||| ||||||||||||||||||
Sbjct: 53084 gccgccgccgcctgcgcgtcgccgt 53108
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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0429G06
          Length = 158321

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 336    gccgcccccgcctgcgcgtcgccgt 360
              |||||| ||||||||||||||||||
Sbjct: 129319 gccgccgccgcctgcgcgtcgccgt 129343
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>emb|AJ336615.1|HSA336615 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-OH13R
          Length = 697

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 235 cctgcaccgcctcgtccagcg 255
           |||||||||||||||||||||
Sbjct: 157 cctgcaccgcctcgtccagcg 137
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>emb|AJ335609.1|HSA335609 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-FI18R
          Length = 723

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 235 cctgcaccgcctcgtccagcg 255
           |||||||||||||||||||||
Sbjct: 157 cctgcaccgcctcgtccagcg 137
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>gb|BC080553.1| Homo sapiens tripartite motif-containing 7, transcript variant 6,
           mRNA (cDNA clone IMAGE:6254343), complete cds
          Length = 1071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 235 cctgcaccgcctcgtccagcg 255
           |||||||||||||||||||||
Sbjct: 527 cctgcaccgcctcgtccagcg 507
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>gb|BC011567.1| Homo sapiens tripartite motif-containing 7, transcript variant 6,
           mRNA (cDNA clone IMAGE:4548895), complete cds
          Length = 1122

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 235 cctgcaccgcctcgtccagcg 255
           |||||||||||||||||||||
Sbjct: 550 cctgcaccgcctcgtccagcg 530
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 344     cgcctgcgcgtcgccgtgcgc 364
               |||||||||||||||||||||
Sbjct: 2634019 cgcctgcgcgtcgccgtgcgc 2634039
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    gtgtcctccagcgccagatcc 284
              |||||||||||||||||||||
Sbjct: 562734 gtgtcctccagcgccagatcc 562714
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>gb|AC115011.27| Mus musculus chromosome 1, clone RP24-192A11, complete sequence
          Length = 173802

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 342   cccgcctgcgcgtcgccgtgcgcg 365
             ||||||||||||| ||||||||||
Sbjct: 78767 cccgcctgcgcgtggccgtgcgcg 78744
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>gb|AC112361.5| Rattus norvegicus 9 BAC CH230-61F12 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216648

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 342    cccgcctgcgcgtcgccgtgcgcg 365
              ||||||||||||| ||||||||||
Sbjct: 139802 cccgcctgcgcgtggccgtgcgcg 139779
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     gccgtgcgcggccaccgtcg 375
               ||||||||||||||||||||
Sbjct: 1515357 gccgtgcgcggccaccgtcg 1515376
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>gb|AC116787.10| Mus musculus chromosome 6, clone RP24-296D21, complete sequence
          Length = 189538

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tgcttccatggaaggaaaaa 131
             ||||||||||||||||||||
Sbjct: 46414 tgcttccatggaaggaaaaa 46395
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>ref|NM_178884.2| Mus musculus expressed sequence AW822216 (AW822216), mRNA
          Length = 4130

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 342 cccgcctgcgcgtcgccgtgcgcg 365
           ||||||||||||| ||||||||||
Sbjct: 81  cccgcctgcgcgtggccgtgcgcg 58
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 165     cgctggaaaaactgttcccg 184
               ||||||||||||||||||||
Sbjct: 1778841 cgctggaaaaactgttcccg 1778860
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 165     cgctggaaaaactgttcccg 184
               ||||||||||||||||||||
Sbjct: 1738985 cgctggaaaaactgttcccg 1739004
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>ref|XM_807189.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053507691.20) partial mRNA
          Length = 10398

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  tctgcaccgacagcgcgtcc 323
            ||||||||||||||||||||
Sbjct: 6694 tctgcaccgacagcgcgtcc 6675
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                               
Query: 338     cgcccccgcctgcgcg-tcgccgtgcgcggcc 368
               |||| ||||||||||| |||||||||||||||
Sbjct: 3184974 cgccaccgcctgcgcggtcgccgtgcgcggcc 3185005
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>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152737

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    gcttccatggaaggaaaaaa 132
              ||||||||||||||||||||
Sbjct: 132124 gcttccatggaaggaaaaaa 132105
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 267    tcctccagcgccagatccatggcc 290
              |||||||||||||| |||||||||
Sbjct: 531554 tcctccagcgccagctccatggcc 531577
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>gb|AE005872.1| Caulobacter crescentus CB15 section 198 of 359 of the complete genome
          Length = 12212

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 348  tgcgcgtcgccgtgcgcggccacc 371
            |||||||||||| |||||||||||
Sbjct: 1616 tgcgcgtcgccgcgcgcggccacc 1639
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>gb|AC124960.26| Medicago truncatula clone mth2-26j24, complete sequence
          Length = 125894

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 260   catggtgtcctccagcgccagatc 283
             |||||||||||||||| |||||||
Sbjct: 81807 catggtgtcctccagcaccagatc 81830
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>gb|AC108467.5| Homo sapiens BAC clone RP11-362I1 from 4, complete sequence
          Length = 92970

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   gcttccatggaaggaaaaaa 132
             ||||||||||||||||||||
Sbjct: 88789 gcttccatggaaggaaaaaa 88808
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>dbj|AK162473.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430079B20 product:hypothetical Fibronectin, type
           III/Immunoglobulin-like/Immunoglobulin C-2
           type/Immunoglobulin subtype/Ig-like domain
           profile/Fibronectin, type III-like fold containing
           protein, full insert sequence
          Length = 3372

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 342 cccgcctgcgcgtcgccgtgcgcg 365
           ||||||||||||| ||||||||||
Sbjct: 800 cccgcctgcgcgtggccgtgcgcg 777
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>gb|S56581.1| alpha inhibin gene {5' region} [rats, Genomic, 2141 nt]
          Length = 2141

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 342 cccgcctgcgcgtcgccgtgcgcg 365
           ||||||||||||| ||||||||||
Sbjct: 429 cccgcctgcgcgtggccgtgcgcg 452
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>dbj|AK034852.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430048B09 product:hypothetical Immunoglobulin and
           major histocompatibility complex domain/Immunoglobulin
           C-2 type/Immunoglobulin subtype containing protein, full
           insert sequence
          Length = 2710

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 342 cccgcctgcgcgtcgccgtgcgcg 365
           ||||||||||||| ||||||||||
Sbjct: 801 cccgcctgcgcgtggccgtgcgcg 778
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>dbj|AK031074.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
           enriched library, clone:5930402G23 product:hypothetical
           Immunoglobulin and major histocompatibility complex
           domain/Fibronectin type III domain/Immunoglobulin C-2
           type/Immunoglobulin subtype containing protein, full
           insert sequence
          Length = 2650

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 342 cccgcctgcgcgtcgccgtgcgcg 365
           ||||||||||||| ||||||||||
Sbjct: 891 cccgcctgcgcgtggccgtgcgcg 868
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>dbj|AK048144.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130037H06 product:hypothetical
           Immunoglobulin and major histocompatibility complex
           domain containing protein, full insert sequence
          Length = 4130

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 342 cccgcctgcgcgtcgccgtgcgcg 365
           ||||||||||||| ||||||||||
Sbjct: 81  cccgcctgcgcgtggccgtgcgcg 58
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>dbj|AK029863.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4931417C03 product:hypothetical
           Immunoglobulin and major histocompatibility complex
           domain containing protein, full insert sequence
          Length = 5558

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 342 cccgcctgcgcgtcgccgtgcgcg 365
           ||||||||||||| ||||||||||
Sbjct: 679 cccgcctgcgcgtggccgtgcgcg 656
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>gb|AC017070.9| Homo sapiens BAC clone RP11-409F2 from 2, complete sequence
          Length = 150942

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     tttttctgcagctgaagata 99
              ||||||||||||||||||||
Sbjct: 128362 tttttctgcagctgaagata 128381
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>ref|XM_343599.2| PREDICTED: Rattus norvegicus similar to sallimus CG1915-PC
            (predicted) (LOC363259), mRNA
          Length = 3599

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 342  cccgcctgcgcgtcgccgtgcgcg 365
            ||||||||||||| ||||||||||
Sbjct: 1031 cccgcctgcgcgtggccgtgcgcg 1008
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     tcctccagcgccagatccat 286
               ||||||||||||||||||||
Sbjct: 3037326 tcctccagcgccagatccat 3037345
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>gb|AC092177.4| Homo sapiens BAC clone RP11-69D8 from 2, complete sequence
          Length = 100132

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    atttttctgcagctgaagataaga 102
             ||||| ||||||||||||||||||
Sbjct: 51675 attttcctgcagctgaagataaga 51652
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 334     ctgccgcccccgcctgcgcg 353
               ||||||||||||||||||||
Sbjct: 5664087 ctgccgcccccgcctgcgcg 5664106
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>emb|AL845166.8| Mouse DNA sequence from clone RP23-236H15 on chromosome 2, complete
             sequence
          Length = 104990

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    tttttctgcagctgaagataagac 103
             ||||||||||||||||||| ||||
Sbjct: 24743 tttttctgcagctgaagatcagac 24720


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,421,304
Number of Sequences: 3902068
Number of extensions: 3421304
Number of successful extensions: 69961
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 69414
Number of HSP's gapped (non-prelim): 552
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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