ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21b05 |
|---|---|
| Clone Library Name | barley_pub |
>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/38 (52%), Positives = 25/38 (65%) Frame = -3 Query: 412 PRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 299 P++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 358 PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/38 (52%), Positives = 25/38 (65%) Frame = -3 Query: 412 PRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 299 P++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 358 PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/38 (52%), Positives = 25/38 (65%) Frame = -3 Query: 412 PRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 299 P++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 358 PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/38 (52%), Positives = 25/38 (65%) Frame = -3 Query: 412 PRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 299 P++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 358 PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 421 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/38 (52%), Positives = 25/38 (65%) Frame = -3 Query: 412 PRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 299 P++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 359 PQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396
>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 418 Score = 37.7 bits (86), Expect = 0.011 Identities = 16/27 (59%), Positives = 21/27 (77%) Frame = -3 Query: 412 PRQRKPDITKAKEVLDWEPKVVLRDGL 332 P++R+PDI KAK +L WEP V L +GL Sbjct: 356 PQRRRPDIRKAKLLLGWEPVVPLEEGL 382
>ARNA_SALTI (Q8Z540) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 34.7 bits (78), Expect = 0.089 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKA 281 RKP I A+ LDWEP + +RD + D F + + ++A Sbjct: 619 RKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659
>ARNA_SALPA (Q5PNA6) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 34.7 bits (78), Expect = 0.089 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKA 281 RKP I A+ LDWEP + +RD + D F + + ++A Sbjct: 619 RKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659
>ARNA_SALCH (P0C0R6) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 32.3 bits (72), Expect = 0.44 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKA 281 RKP I A+ L WEP + +RD + D F + V ++A Sbjct: 619 RKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659
>ARNA_PSEAE (Q9HY63) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 662 Score = 32.3 bits (72), Expect = 0.44 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKAKA 275 RKP I A+ +LDW+P + LR+ + D F ++A+A Sbjct: 620 RKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662
>ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA protein (Polymyxin| resistance protein pmrI) [Includes: UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1 Length = 660 Score = 32.0 bits (71), Expect = 0.58 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKA 281 RKP I A+ L WEP + +RD + D F + + ++A Sbjct: 619 RKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDIAERA 659
>Y4NL_RHISN (P55584) Hypothetical 38.7 kDa protein y4nL| Length = 356 Score = 31.2 bits (69), Expect = 0.99 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = -3 Query: 394 DITKAKEVLDWEPKVVLRDGL 332 DITKA++VL + PK+ LR+G+ Sbjct: 322 DITKARKVLGYAPKIALREGM 342
>ARNA_ECOL6 (Q8FFM1) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 30.8 bits (68), Expect = 1.3 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRD 338 RKP I A+ LDWEPK+ +++ Sbjct: 619 RKPSIRNARRCLDWEPKIDMQE 640
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.8 bits (68), Expect = 1.3 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -1 Query: 366 TGSPRSSYVTAWCSWRTTSGSVWQCPRRPRPKATSLR-LAYITNLPEHTHSWVGSSIFV 193 T SP +S+ T CS T SG +WQC P P S++ A+I+ E + G +V Sbjct: 394 TYSPGTSFNTT-CSSCTCSGGLWQCQDLPCPGTCSVQGGAHISTYDEKLYDLHGDCSYV 451
>RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination protein O)| Length = 234 Score = 30.0 bits (66), Expect = 2.2 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 10/77 (12%) Frame = -1 Query: 393 TSQRQRRFLTGSPRSSYVTAWCSWRTTSGS----------VWQCPRRPRPKATSLRLAYI 244 T + R+ L G ++ + T S+R + WQ +P P+ SL L ++ Sbjct: 62 TPPKMRKVLQGELKNPFTTIKNSYRLLQSTGKMIQAILKTQWQ--EKPSPQLFSLFLNFL 119 Query: 243 TNLPEHTHSWVGSSIFV 193 +PE H + SS+F+ Sbjct: 120 QRIPETPHPYFFSSMFL 136
>ARNA_SHIFL (Q83QT8) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 29.6 bits (65), Expect = 2.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRD 338 RKP I A LDWEPK+ +++ Sbjct: 619 RKPSIRNAHRCLDWEPKIDMQE 640
>ARNA_ECOLI (P77398) Bifunctional polymyxin resistance arnA protein (Polymyxin| resistance protein pmrI) [Includes: UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1 Length = 660 Score = 29.6 bits (65), Expect = 2.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRD 338 RKP I A LDWEPK+ +++ Sbjct: 619 RKPSIRNAHRCLDWEPKIDMQE 640
>ARNA_ECO57 (Q8XDZ3) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 29.6 bits (65), Expect = 2.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRD 338 RKP I A LDWEPK+ +++ Sbjct: 619 RKPSIRNAHHCLDWEPKIDMQE 640
>TR2M_AGRTU (P0A3V3) Tryptophan 2-monooxygenase (EC 1.13.12.3)| Length = 755 Score = 29.6 bits (65), Expect = 2.9 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 12/61 (19%) Frame = -3 Query: 391 ITKAKEVLDWEPKVVLRDGLVLM----EDDFRERLAVPKKAK--------A*GHFPAFGV 248 I KA LD+EP+ GLVL+ EDD + LAVP K + FPAF Sbjct: 586 IAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERLCLLRDAISRSFPAFAQ 645 Query: 247 H 245 H Sbjct: 646 H 646
>TR2M_AGRT4 (P0A3V2) Tryptophan 2-monooxygenase (EC 1.13.12.3)| Length = 755 Score = 29.6 bits (65), Expect = 2.9 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 12/61 (19%) Frame = -3 Query: 391 ITKAKEVLDWEPKVVLRDGLVLM----EDDFRERLAVPKKAK--------A*GHFPAFGV 248 I KA LD+EP+ GLVL+ EDD + LAVP K + FPAF Sbjct: 586 IAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERLCLLRDAISRSFPAFAQ 645 Query: 247 H 245 H Sbjct: 646 H 646
>GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose| dehydratase 1) (GMD 1) Length = 361 Score = 29.6 bits (65), Expect = 2.9 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = -3 Query: 400 KPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKAK 278 K D +KAKE+L W+PKV + +M D E L + K+ K Sbjct: 310 KGDASKAKEMLGWKPKVGFEKLVKMMVD---EDLELAKREK 347
>RFBE_SALTI (P14169) CDP-paratose 2-epimerase (EC 5.1.3.10) (CDP-tyvelose| 2-epimerase) Length = 338 Score = 29.3 bits (64), Expect = 3.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 394 DITKAKEVLDWEPKVVLRDGLVLMED 317 DI K +DW PKV +DG+ M D Sbjct: 308 DIKKITNAIDWSPKVSAKDGVQKMYD 333
>SECA1_MYCLE (P57996) Preprotein translocase secA 1 subunit| Length = 940 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/34 (35%), Positives = 23/34 (67%) Frame = -3 Query: 385 KAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKK 284 KAKE+ + + ++RDG VL+ D+F R+ + ++ Sbjct: 296 KAKELFNRDKDYIVRDGEVLIVDEFTGRVLIGRR 329
>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 2) Length = 371 Score = 28.5 bits (62), Expect = 6.4 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = -3 Query: 409 RQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKAKA*G 269 R R D T KE L W P + L+DGL + +E+L +K KA G Sbjct: 298 RGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQL---EKEKAEG 341
>ARNA_WIGBR (Q8D341) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 654 Score = 28.5 bits (62), Expect = 6.4 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = -3 Query: 406 QRKPDITKAKEVLDWEPKVVLR 341 +RKP+I AK++L+W PK +R Sbjct: 617 RRKPNIDIAKKLLNWTPKTKIR 638
>ARNA_PSEF5 (Q4KC82) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 668 Score = 28.5 bits (62), Expect = 6.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 403 RKPDITKAKEVLDWEPKVVLRD 338 RKP I AK +L+WEP V + + Sbjct: 621 RKPSIDNAKRLLNWEPTVEMSE 642
>ACSA_PASMU (Q9CMW1) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 653 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = -2 Query: 362 GAQGRPT*RLGAHGGRLPGAFGSAQEGQGLRPLPCVWRTSPICQSILIVGWVRQYSLLCF 183 G+ G+P + + GG L GA S + +P W T+ VGW+ +S +C+ Sbjct: 269 GSTGKPKGIVHSTGGYLLGALNSFRNVFDNKPNDIFWCTAD-------VGWITGHSYVCY 321
>SECA1_MYCTU (P0A5Y8) Preprotein translocase secA 1 subunit| Length = 949 Score = 28.5 bits (62), Expect = 6.4 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = -3 Query: 385 KAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKK 284 KAKE+ + ++RDG VL+ D+F R+ + ++ Sbjct: 296 KAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRR 329
>SECA1_MYCBO (P0A5Y9) Preprotein translocase secA 1 subunit| Length = 949 Score = 28.5 bits (62), Expect = 6.4 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = -3 Query: 385 KAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKK 284 KAKE+ + ++RDG VL+ D+F R+ + ++ Sbjct: 296 KAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRR 329
>GMD2_ARATH (P93031) GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47) (GDP-D-mannose| dehydratase 2) (GMD 2) Length = 373 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -3 Query: 394 DITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKAK 278 D +KAKEVL W+P+V + +M D E L + K+ K Sbjct: 324 DASKAKEVLGWKPQVGFEKLVKMMVD---EDLELAKREK 359 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,687,101 Number of Sequences: 219361 Number of extensions: 1263271 Number of successful extensions: 2976 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2975 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
