ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (... 821 0.0
2emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-gluc... 153 5e-34
3gb|AY104952.1| Zea mays PCO092342 mRNA sequence 131 2e-27
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 7e-18
5gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 100 7e-18
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
7dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRN... 100 7e-18
8dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
9dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
10dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
11gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence 70 6e-09
12gb|U82433.1|PAU82433 Prunus armeniaca thymidine diphospho-glucos... 60 6e-06
13gb|AY922315.1| Populus tomentosa UDP-glucuronic acid decarboxyla... 46 0.090
14ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G46440 ... 44 0.36
15ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT3G464... 44 0.36
16ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 ... 44 0.36
17ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID ... 44 0.36
18gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, co... 44 0.36
19gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4-6-de... 44 0.36
20gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4-6-de... 44 0.36
21emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BA... 44 0.36
22emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, B... 44 0.36
23gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, co... 44 0.36
24gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, co... 44 0.36
25emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cDNA Co... 44 0.36
26emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cDNA Co... 44 0.36
27emb|BX822583.1|CNS0A63N Arabidopsis thaliana Full-length cDNA Co... 44 0.36
28emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Co... 44 0.36
29gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, complete s... 44 0.36
30gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarbox... 44 0.36
31emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4... 44 0.36
32gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete... 42 1.4
33gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 5.5
34gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence 40 5.5
35emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chro... 40 5.5
36emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 i... 40 5.5
37gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complet... 40 5.5
38gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Ca... 40 5.5
39gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosom... 40 5.5
40gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Can... 40 5.5
41emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 i... 40 5.5
42gb|AY108129.1| Zea mays PCO069672 mRNA sequence 40 5.5
43emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on ch... 40 5.5
44emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chr... 40 5.5 
>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete
            cds
          Length = 1433

 Score =  821 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggcaccaacgttgctataattgatttagggaagtgcataggctaaaacattaggaccaca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 ggcaccaacgttgctataattgatttagggaagtgcataggctaaaacattaggaccaca 1337

                                                                        
Query: 61   agttccgcaaaaagcgggagtaatacaaacagccaggccttgtatataaagtttctaata 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 agttccgcaaaaagcgggagtaatacaaacagccaggccttgtatataaagtttctaata 1277

                                                                        
Query: 121  atacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccgta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 atacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccgta 1217

                                                                        
Query: 181  acgaaacacagcaacgaatattgacgaacccacccaactatgagtatgctctggcaaatt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1216 acgaaacacagcaacgaatattgacgaacccacccaactatgagtatgctctggcaaatt 1157

                                                                        
Query: 241  ggtgatgtacgccaaacgcagggaagtggccttaggccttggccttcttgggcactgcca 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 ggtgatgtacgccaaacgcagggaagtggccttaggccttggccttcttgggcactgcca 1097

                                                                        
Query: 301  aacgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggct 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 aacgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggct 1037

                                                                  
Query: 361  cccagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggt 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 cccagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggt 983
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>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene)
          Length = 1562

 Score =  153 bits (77), Expect = 5e-34
 Identities = 125/141 (88%)
 Strand = Plus / Minus

                                                                        
Query: 272  ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 331
            ||||||||| | || ||||||||| ||||  |||||||||||||| ||||||||||||||
Sbjct: 1291 ttaggccttagtctccttgggcacagccaggcgctcccggaagtcatcctccatgagcac 1232

                                                                        
Query: 332  caagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgat 391
            |||||||||||| || |||||||| ||||||||  | ||||| ||||| |||||||||||
Sbjct: 1231 caagccgtcacgcagaacgaccttaggctcccaccccagaacttccttcgcctttgtgat 1172

                                 
Query: 392  gtcaggcttcctctggcgagg 412
            ||| |||||||||||||||||
Sbjct: 1171 gtctggcttcctctggcgagg 1151



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 119  taatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccg 178
            |||||||||||||||| |||||||||| | |||| |  ||||||||||||||||||||||
Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360

                    
Query: 179  taacgaaa 186
            ||| ||||
Sbjct: 1359 taatgaaa 1352



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                        
Query: 6    caacgttgctataattgatttagggaagtgcataggcta-aaacattaggaccacaagtt 64
            |||| |||||||||| |||||||||| || |||| |||| |||||| || ||||||||||
Sbjct: 1527 caacattgctataatcgatttaggga-gtacataagctacaaacataagtaccacaagtt 1469

                       
Query: 65   ccgcaaaaagc 75
            | | |||||||
Sbjct: 1468 ctgtaaaaagc 1458
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>gb|AY104952.1| Zea mays PCO092342 mRNA sequence
          Length = 1825

 Score =  131 bits (66), Expect = 2e-27
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                        
Query: 272  ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 331
            |||||||||||  ||||||||||| ||||  ||||||||||| || ||||||||||||||
Sbjct: 1535 ttaggccttggttttcttgggcacggccaggcgctcccggaaatcatcctccatgagcac 1476

                                                                        
Query: 332  caagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgat 391
            |||||||||    ||||||| ||||||||||||  | ||||| ||||||||||| |||||
Sbjct: 1475 caagccgtccttcaggacgatcttgggctcccaccctagaacttcctttgccttggtgat 1416

                              
Query: 392  gtcaggcttcctctggcg 409
            ||| ||||||||||||||
Sbjct: 1415 gtccggcttcctctggcg 1398



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 113  ttctaataatacaatctttcaag-tgaacgacaaaggtgtaattggtttattggaactca 171
            ||||||| |||||||| |||||| ||| |||  ||||| || |  |||||||||||||||
Sbjct: 1684 ttctaatgatacaatccttcaaggtgatcgaagaaggtatattccgtttattggaactca 1625

                           
Query: 172  aattccgtaacgaaa 186
            |||||||||| ||||
Sbjct: 1624 aattccgtaatgaaa 1610
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                           
Query: 271     cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
               ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 9412292 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9412233

                                                                           
Query: 331     ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 390
               ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 9412232 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 9412173

                                     
Query: 391     tgtcaggcttcctctggcgagg 412
               |||| ||||||||||| |||||
Sbjct: 9412172 tgtctggcttcctctgacgagg 9412151



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 6       caacgttgctataattgatttagg 29
               |||| |||||||||||||||||||
Sbjct: 9412547 caacattgctataattgatttagg 9412524



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 113     ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9412442 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9412403
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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                          
Query: 271    cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
              ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 109692 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 109633

                                                                          
Query: 331    ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 390
              ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 109632 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 109573

                                    
Query: 391    tgtcaggcttcctctggcgagg 412
              |||| ||||||||||| |||||
Sbjct: 109572 tgtctggcttcctctgacgagg 109551



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 6      caacgttgctataattgatttagg 29
              |||| |||||||||||||||||||
Sbjct: 109947 caacattgctataattgatttagg 109924



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 113    ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
              ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 109842 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 109803
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                           
Query: 271     cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
               ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 9410413 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9410354

                                                                           
Query: 331     ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 390
               ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 9410353 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 9410294

                                     
Query: 391     tgtcaggcttcctctggcgagg 412
               |||| ||||||||||| |||||
Sbjct: 9410293 tgtctggcttcctctgacgagg 9410272



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 6       caacgttgctataattgatttagg 29
               |||| |||||||||||||||||||
Sbjct: 9410668 caacattgctataattgatttagg 9410645



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 113     ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9410563 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9410524
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>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic
            acid decarboxylase, complete cds
          Length = 1053

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                        
Query: 303  cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 362
            ||||||||||| || || ||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 1022 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 963

                                                              
Query: 363  cagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagg 412
            ||  | | ||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 962  caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgagg 913
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>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full
            insert sequence
          Length = 1811

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 271  cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
            ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 1542 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1483

                                                                        
Query: 331  ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 390
            ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 1482 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 1423

                                  
Query: 391  tgtcaggcttcctctggcgagg 412
            |||| ||||||||||| |||||
Sbjct: 1422 tgtctggcttcctctgacgagg 1401



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 6    caacgttgctataattgatttagg 29
            |||| |||||||||||||||||||
Sbjct: 1797 caacattgctataattgatttagg 1774



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 113  ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1692 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1653
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>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full
           insert sequence
          Length = 472

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                       
Query: 271 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
           ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 207 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 148

                                                                       
Query: 331 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 390
           ||||||| ||||| || |||| | ||||||||||  | | |||||||||||||||||| |
Sbjct: 147 ccaagccatcacgcagaacgatcctgggctcccaccccaaaacctcctttgcctttgtaa 88

                                 
Query: 391 tgtcaggcttcctctggcgagg 412
           |||| ||||||||||| |||||
Sbjct: 87  tgtctggcttcctctgacgagg 66



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 6   caacgttgctataattgatttagg 29
           |||| |||||||||||||||||||
Sbjct: 462 caacattgctataattgatttagg 439



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 113 ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
           ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 357 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 318
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>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full
            insert sequence
          Length = 1411

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 271  cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
            ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 1153 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1094

                                                                        
Query: 331  ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 390
            ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 1093 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 1034

                                  
Query: 391  tgtcaggcttcctctggcgagg 412
            |||| ||||||||||| |||||
Sbjct: 1033 tgtctggcttcctctgacgagg 1012



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 6    caacgttgctataattgatttagg 29
            |||| |||||||||||||||||||
Sbjct: 1408 caacattgctataattgatttagg 1385



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 113  ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1303 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1264
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>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence
          Length = 958

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                       
Query: 304 gctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctccc 363
           |||||||||| || ||||||||||||||||||||||| |  |||| ||  ||||||||||
Sbjct: 787 gctcccggaaatcatcctccatgagcaccaagccgtcccccaggaagattttgggctccc 728

                                                      
Query: 364 agtcaagaacctcctttgcctttgtgatgtcaggcttcctctg 406
           |  | | ||| |||||  |||||||||| || |||||||||||
Sbjct: 727 atcccaaaacttccttcccctttgtgatatccggcttcctctg 685



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 162 ttggaactcaaattccgtaacgaaa 186
           |||||||||||||||||||| ||||
Sbjct: 921 ttggaactcaaattccgtaatgaaa 897
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>gb|U82433.1|PAU82433 Prunus armeniaca thymidine diphospho-glucose 4-6-dehydratase
           homolog mRNA, partial cds
          Length = 1012

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 375 tcctttgcctttgtgatgtcaggcttcctctggcgagg 412
           ||||| || |||||||||||||||||||||||||||||
Sbjct: 702 tccttcgcttttgtgatgtcaggcttcctctggcgagg 665
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>gb|AY922315.1| Populus tomentosa UDP-glucuronic acid decarboxylase 3 (UXS3) mRNA,
           complete cds
          Length = 1129

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 376 cctttgcctttgtgatgtcaggcttcctctg 406
           ||||||||||||| |||||||| ||||||||
Sbjct: 981 cctttgcctttgtaatgtcaggtttcctctg 951
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>ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript
            variant AT3G46440.1 mRNA, complete cds
          Length = 1374

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 381  gcctttgtgatgtcaggcttcctctg 406
            |||||||||||||| |||||||||||
Sbjct: 1051 gcctttgtgatgtctggcttcctctg 1026
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>ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript
            variant AT3G46440.2 mRNA, complete cds
          Length = 1464

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 381  gcctttgtgatgtcaggcttcctctg 406
            |||||||||||||| |||||||||||
Sbjct: 1141 gcctttgtgatgtctggcttcctctg 1116
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>ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 mRNA, complete cds
          Length = 1063

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 381 gcctttgtgatgtcaggcttcctctggcgagggt 414
           |||||||||||||||||||| |||| | ||||||
Sbjct: 966 gcctttgtgatgtcaggctttctcttgtgagggt 999
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>ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2);
            catalytic/ dTDP-glucose 4,6-dehydratase AT3G62830 (UXS2)
            mRNA, complete cds
          Length = 1338

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 381  gcctttgtgatgtcaggcttcctctggcgagggt 414
            |||||||||||||||||||| |||| | ||||||
Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggt 1160
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>gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, complete cds
          Length = 1338

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 381  gcctttgtgatgtcaggcttcctctggcgagggt 414
            |||||||||||||||||||| |||| | ||||||
Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggt 1160
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>gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratases
           (At3g46440) mRNA, complete cds
          Length = 1057

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 381 gcctttgtgatgtcaggcttcctctg 406
           |||||||||||||| |||||||||||
Sbjct: 926 gcctttgtgatgtctggcttcctctg 901
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>gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratase
            (At3g46440) mRNA, complete cds
          Length = 1356

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 381  gcctttgtgatgtcaggcttcctctg 406
            |||||||||||||| |||||||||||
Sbjct: 1051 gcctttgtgatgtctggcttcctctg 1026
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>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9
          Length = 110257

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 381   gcctttgtgatgtcaggcttcctctggcgagggt 414
             |||||||||||||||||||| |||| | ||||||
Sbjct: 88182 gcctttgtgatgtcaggctttctcttgtgagggt 88149
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>emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, BAC clone F18L15
          Length = 100328

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 381   gcctttgtgatgtcaggcttcctctg 406
             |||||||||||||| |||||||||||
Sbjct: 75554 gcctttgtgatgtctggcttcctctg 75579
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>gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
          Length = 1663

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 381  gcctttgtgatgtcaggcttcctctggcgagggt 414
            |||||||||||||||||||| |||| | ||||||
Sbjct: 1346 gcctttgtgatgtcaggctttctcttgtgagggt 1313
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>gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
          Length = 1701

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 381  gcctttgtgatgtcaggcttcctctggcgagggt 414
            |||||||||||||||||||| |||| | ||||||
Sbjct: 1346 gcctttgtgatgtcaggctttctcttgtgagggt 1313
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>emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS6ZC01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1114

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 381 gcctttgtgatgtcaggcttcctctg 406
           |||||||||||||| |||||||||||
Sbjct: 876 gcctttgtgatgtctggcttcctctg 851
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>emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH86ZD03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1211

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 381 gcctttgtgatgtcaggcttcctctg 406
           |||||||||||||| |||||||||||
Sbjct: 950 gcctttgtgatgtctggcttcctctg 925
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>emb|BX822583.1|CNS0A63N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB50ZB02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 451

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 381 gcctttgtgatgtcaggcttcctctggcgagggt 414
           |||||||||||||||||||| |||| | ||||||
Sbjct: 92  gcctttgtgatgtcaggctttctcttgtgagggt 59
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>emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL65ZB07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 923

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 381 gcctttgtgatgtcaggcttcctctggcgagggt 414
           |||||||||||||||||||| |||| | ||||||
Sbjct: 564 gcctttgtgatgtcaggctttctcttgtgagggt 531
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>gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, complete sequence
          Length = 1281

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 381 gcctttgtgatgtcaggcttcctctg 406
           |||||||||||||| |||||||||||
Sbjct: 987 gcctttgtgatgtctggcttcctctg 962
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>gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS2) mRNA,
            complete cds
          Length = 1338

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 381  gcctttgtgatgtcaggcttcctctggcgagggt 414
            |||||||||||||||||||| |||| | ||||||
Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggt 1160
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>emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4-6-dehydratases
          Length = 1660

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 381  gcctttgtgatgtcaggcttcctctggcgagggt 414
            |||||||||||||||||||| |||| | ||||||
Sbjct: 1332 gcctttgtgatgtcaggctttctcttgtgagggt 1299
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>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence
          Length = 255062

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    gcctttgtgatgtcaggcttc 401
              |||||||||||||||||||||
Sbjct: 163613 gcctttgtgatgtcaggcttc 163593
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     taattgatttagggaagtgc 36
              ||||||||||||||||||||
Sbjct: 657464 taattgatttagggaagtgc 657445
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>gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence
          Length = 35325

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aaagtttctaataatacaat 127
             ||||||||||||||||||||
Sbjct: 20319 aaagtttctaataatacaat 20300
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>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part
              of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G)
              and a novel gene, complete sequence
          Length = 145136

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    aaagtttctaataatacaat 127
              ||||||||||||||||||||
Sbjct: 103537 aaagtttctaataatacaat 103518
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>emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 in linkage group 18,
              complete sequence
          Length = 149493

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    taaagtttctaataatacaa 126
              ||||||||||||||||||||
Sbjct: 107638 taaagtttctaataatacaa 107657
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>gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complete sequence
          Length = 195101

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tatataaagtttctaataat 122
             ||||||||||||||||||||
Sbjct: 13115 tatataaagtttctaataat 13096
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>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute
           (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207228

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 gacaaaggtgtaattggttt 160
           ||||||||||||||||||||
Sbjct: 337 gacaaaggtgtaattggttt 318
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>gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosome 8, complete sequence
          Length = 193884

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    ttggccttcttgggcactgc 298
              ||||||||||||||||||||
Sbjct: 153079 ttggccttcttgggcactgc 153098
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>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 135177

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   gacaaaggtgtaattggttt 160
             ||||||||||||||||||||
Sbjct: 76946 gacaaaggtgtaattggttt 76927
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>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18,
              complete sequence
          Length = 176163

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    taaagtttctaataatacaa 126
              ||||||||||||||||||||
Sbjct: 165685 taaagtttctaataatacaa 165666
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>gb|AY108129.1| Zea mays PCO069672 mRNA sequence
          Length = 984

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 354 ttgggctcccagtcaagaac 373
           ||||||||||||||||||||
Sbjct: 623 ttgggctcccagtcaagaac 604
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>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
              sequence
          Length = 231197

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    tatgagtatgctctggcaaa 238
              ||||||||||||||||||||
Sbjct: 208325 tatgagtatgctctggcaaa 208306
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>emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chromosome 2, complete
             sequence
          Length = 159617

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   ttggccttcttgggcactgc 298
             ||||||||||||||||||||
Sbjct: 53068 ttggccttcttgggcactgc 53049


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,218,167
Number of Sequences: 3902068
Number of extensions: 3218167
Number of successful extensions: 57529
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57404
Number of HSP's gapped (non-prelim): 124
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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