>PPZ2_YEAST (P33329) Serine/threonine-protein phosphatase PP-Z2 (EC 3.1.3.16)|
          Length = 709

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +2

Query: 14  HAASVSALHFITWLSGNSTP*HGPATTKHSPRDSRRSTDLGDNRRGNKITRVESLPV--P 187
           HA+S  +    T  +  STP H PA  K S RD   + D GDN  G   + + +L +  P
Sbjct: 252 HASSRKSSFGSTGNTAYSTPLHSPALRKMSSRD---NDDSGDNVNGRGTSPIPNLNIDKP 308

Query: 188 VKPAATPGKKTGLGLPAPVADDDRTGCTS 274
              A++  K+  L     +A  D +   S
Sbjct: 309 SPSASSASKREYLSAYPTLAHRDSSSSLS 337

>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal
            proliferator-activated receptor A-interacting complex 320
            kDa protein) (PPAR-alpha-interacting complex protein 320
            kDa)
          Length = 2885

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 106  ARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSS 201
            +++P +H+ G QSS   D  S +  C S++SS
Sbjct: 2117 SKKPRVHKRGSQSSSDSDSDSARSSCSSRSSS 2148

>GOR_PANTR (P48778) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (RNA|
           exonuclease 1 homolog-like)
          Length = 427

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +2

Query: 5   QKKHAASVSALHFITWLSGNSTP*HGPATTKHSPRDSRRSTDLGDNRRGNKITRVESLPV 184
           Q +H ++  A     W    ST    P ++   PR   + T   D RRG K     + P+
Sbjct: 304 QPRHRSASPAALACPWPQAPSTTAISPESSPCPPRRKAKETGAVDGRRGQKAKSNPNRPL 363

Query: 185 PV 190
           PV
Sbjct: 364 PV 365

>ARNT_DROME (O15945) Aryl hydrocarbon receptor nuclear translocator homolog|
           (dARNT) (Protein tango) (Hypoxia-inducible factor 1
           beta)
          Length = 644

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
 Frame = +1

Query: 61  QQHALTRPSYDETLTARQPS----IHRSGGQSSRQQD----YKSGKPPCPSQTSSYTWKK 216
           QQ       Y +T  AR PS       S G  +RQQ     Y++G PP P+    + W++
Sbjct: 523 QQPVTEGYQYQQTSPARSPSGPTYTQLSAGNGNRQQAQPGAYQAGPPPPPNAPGMWDWQQ 582

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +2

Query: 176  LPVPVKPAATPGKKTGLGLPAPVADD 253
            LP    PAATPG +  LG PAP A D
Sbjct: 1009 LPEQAAPAATPGSQILLGHPAPYAVD 1034

>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)|
            (Proliferation-related protein p80) [Contains: MAP1 light
            chain LC2]
          Length = 2805

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
 Frame = +2

Query: 56   SGNSTP*H-GPATTKHSPRDSRRSTDLGDNRRGNKITRVESLPVPVKPA----------A 202
            S   TP H  P   K  P+D + +   GD +R   + + ++    VKP            
Sbjct: 1004 SATHTPFHQSPVEEKSEPQDFQEADSWGDTKRTPGVGKEDAAEETVKPGPEEGTLEKEEK 1063

Query: 203  TPGKKTGLGLPAPV-ADDDRTGCT 271
             P  ++     APV  D+  TGCT
Sbjct: 1064 VPPPRSPQAQEAPVNIDEGLTGCT 1087

>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 106  ARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSS 201
            +++P +H+ G +SS   D  S +  C S++SS
Sbjct: 2118 SKKPRVHKRGSESSSDSDSDSERSSCSSRSSS 2149

>NINAC_DROME (P10676) Neither inactivation nor afterpotential protein C (EC|
            2.7.11.1)
          Length = 1501

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 85   SYDETLTARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSSYTWKKN 219
            SY+     +   +HRSG + +  + Y +  PP P   SS  ++ N
Sbjct: 1299 SYNSNYNNQNWGVHRSGSRRNSLKGYAAPPPPPPPMPSSNYYRNN 1343

>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor (ECM3|
            homolog) (NV domain-containing protein 1)
          Length = 3160

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 64   QHALTRPSYDETL--TARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSSYTWKK 216
            Q AL R  Y  T+     + + HR  G+ S +  Y S   P P Q ++ +WKK
Sbjct: 2991 QVALGREWYIHTIYTVKSKDNTHRGIGKRSLEYQYHSVVHPGPPQATTKSWKK 3043

>COAT_IRV6 (Q05815) Major capsid protein (MCP) (Major structural protein)|
           (MSP)
          Length = 467

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 137 DNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAP 241
           DN  GN    ++  PVPV PA     +  L LP P
Sbjct: 150 DNMIGNVSALIQPQPVPVAPATVSLPEADLNLPLP 184

>IF2_SYMTH (Q67P86) Translation initiation factor IF-2|
          Length = 1044

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 182 VPVKPAATPGKKTGLGLPAPVADDDRTGCTSG 277
           VPVKPAA  G K+GLGLP    +    G   G
Sbjct: 312 VPVKPAA--GGKSGLGLPTRPGEKAADGARGG 341

>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 88  YDETLTAR---QPSIHRSGGQSSRQQDYKSGKPPCPSQTSS 201
           +DETL  +   QPS    G  +   QDY+   P  P++  S
Sbjct: 431 FDETLARQERSQPSQRNGGSSTYESQDYREAAPLSPTEEES 471

>Y4VJ_RHISN (Q53218) Hypothetical 39.2 kDa protein y4vJ|
          Length = 351

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 228 PSPVFFPGVAAGLTGTGRLSTLVILLP 148
           PSP+      AGLT T RL T V +LP
Sbjct: 54  PSPLLMVAHCAGLTSTIRLGTAVCVLP 80

>CLF1_USTMA (Q4PB37) Pre-mRNA-splicing factor CLF1|
          Length = 781

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
 Frame = -2

Query: 280 GS*RAASSVIIGNRRRQAQP--------GFFSRCSCWFDWDREAFHSCNLVAATIVPQIG 125
           G+  +    +IG RR Q +         G  +    WFD+ R    +   + AT     G
Sbjct: 295 GTMNSVEDTVIGKRRIQYEEELAAQEAGGAPADYDTWFDYSRLEEDAYRALLAT-----G 349

Query: 124 GSTAVAR*VFRRSWAVSGRAVAREPSNKMQSRDRRCMFFL 5
           GS    +   +R   V  RA+A+ PS++ + RD R   FL
Sbjct: 350 GSQDQLQQAVKRVREVYERAIAQVPSSQ-EKRDWRRYIFL 388

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 170  ESLPVPVKPAATPGKKTGLGLPAPVADDDRTG 265
            +S P+P  PA  PG      LP P A    TG
Sbjct: 984  QSQPLPSSPAQPPGLTQSQSLPPPAASHPTTG 1015

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 170  ESLPVPVKPAATPGKKTGLGLPAPVADDDRTG 265
            +S P+P  PA  PG      LP P A    TG
Sbjct: 985  QSQPLPSSPAQPPGLTQSQSLPPPAASHPTTG 1016

>Y1998_PARUW (Q6M9M7) Hypothetical RNA methyltransferase pc1998 (EC 2.1.1.-)|
          Length = 383

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 117 VDPPIWGTIVAATRLQEWKASLSQSNQQLHLEKKPGWACRRRL 245
           V+PPIW  ++     + +K +L   N  LH     GW CR +L
Sbjct: 27  VEPPIWREVI-----ENFKETL---NPILHQGTLTGWRCRAKL 61

>XYLM_PSEPU (P21395) Xylene monooxygenase subunit 1 (EC 1.14.15.-)|
          Length = 369

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 123 PPIWGTIVAATRLQEWK---ASLSQSNQQLHLEKKPGW 227
           PP+W  ++A  +L++W    A+  +    +   KK GW
Sbjct: 318 PPLWFALIAKPKLRDWDQRYATPGERELAMAANKKAGW 355

>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein) (Brain-derived HLMN protein)
          Length = 5038

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 106 ARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSSYTWKKN 219
           A  PS+HR     S Q   + GKPP P +   +   K+
Sbjct: 73  AESPSMHRKQELDSSQAPQQPGKPPDPGRPPQHGLSKS 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.126    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,220,550
Number of Sequences: 219361
Number of extensions: 904413
Number of successful extensions: 3317
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3315
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)