ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart21b02 |
|---|---|
| Clone Library Name | barley_pub |
>SAP_CHICK (O13035) Proactivator polypeptide precursor [Contains: Saposin A;| Saposin B; Saposin C; Saposin D] Length = 518 Score = 33.1 bits (74), Expect = 0.42 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -1 Query: 498 ILLKECKKI-EGHEQQCKRLVLQYIPLILVNGEKFLEKNDICTIVQACDAGKKTVLG 331 +L K C + E QC + V QY P+++ + ++ +CT + C A KK +LG Sbjct: 429 LLEKVCHFLPESVSDQCVQFVEQYEPVVVQLLAEMMDPTFVCTKLGVCGAAKKPLLG 485 Score = 29.3 bits (64), Expect = 6.1 Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Frame = -1 Query: 495 LLKECKKI--EGHEQQCKRLVLQYIPLIL-VNGEKFLEKNDICTIVQACDAGKKTVLGSF 325 L K C+ + +G +CK +V Y+P+I+ + E+F + +C+ + C + +K + Sbjct: 91 LEKRCEFLPDQGLASECKEIVDSYLPVIMDMIKEEFDKPEVVCSALSLCQSLQKHLAAMK 150 Query: 324 SGEGLLRDE*RQKDYTEPRKP 262 + L ++ + D++E P Sbjct: 151 LQKQLQSNKIPELDFSELTSP 171
>OXAA_DEIRA (Q9RSH5) Membrane protein oxaA| Length = 428 Score = 32.3 bits (72), Expect = 0.72 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 202 ASRILDTYVQQEELVHYVSSGFTRLGVVFLPSFIAQQTL 318 A+ L+ Y + EL+H SG+T L +F P+F Q +L Sbjct: 159 ATSSLEVYGGKNELIHLYQSGYTELPGLFQPNFFGQISL 197
>YGEZ_ECOLI (Q46806) Hypothetical hydrolase ygeZ (EC 3.-.-.-)| Length = 461 Score = 32.0 bits (71), Expect = 0.94 Identities = 25/79 (31%), Positives = 32/79 (40%) Frame = +3 Query: 15 PIISRQTETRFSIYSLFRYHYKLNTDQVISTTRLQVDIRNCSSYRSLYNTKHPENAAAAR 194 P+I + + F +Y Y YKLN D+V+ R + T HPEN AA Sbjct: 140 PMIVEEGLSSFKLY--LTYQYKLNDDEVLQALRRLHE-------SGALTTVHPENDAAIA 190 Query: 195 SKSQSNFGHLCTTRRTSAL 251 SK T R AL Sbjct: 191 SKRAEFIAAGLTAPRYHAL 209
>SAP_RAT (P10960) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 554 Score = 30.8 bits (68), Expect = 2.1 Identities = 12/46 (26%), Positives = 27/46 (58%) Frame = -1 Query: 465 HEQQCKRLVLQYIPLILVNGEKFLEKNDICTIVQACDAGKKTVLGS 328 +++QC V +Y PL+L + ++ + +C+ + C + K +LG+ Sbjct: 477 YQKQCDEFVAEYEPLLLEILVEVMDPSFVCSKIGVCPSAYKLLLGT 522
>SAP_BOVIN (P26779) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta-glucosidase) (A Length = 525 Score = 30.8 bits (68), Expect = 2.1 Identities = 12/46 (26%), Positives = 27/46 (58%) Frame = -1 Query: 465 HEQQCKRLVLQYIPLILVNGEKFLEKNDICTIVQACDAGKKTVLGS 328 + +QC + V +Y P+++ + ++ + +C + AC A K +LG+ Sbjct: 448 YRKQCDQFVTEYEPVLIEILVEVMDPSFVCLKIGACPAAHKPLLGA 493
>SAP_HUMAN (P07602) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B-Val; Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta- Length = 524 Score = 30.4 bits (67), Expect = 2.7 Identities = 11/46 (23%), Positives = 28/46 (60%) Frame = -1 Query: 465 HEQQCKRLVLQYIPLILVNGEKFLEKNDICTIVQACDAGKKTVLGS 328 +++QC + V +Y P+++ + ++ + +C + AC + K +LG+ Sbjct: 447 YQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACPSAHKPLLGT 492
>SAP_MOUSE (Q61207) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 557 Score = 29.6 bits (65), Expect = 4.7 Identities = 12/46 (26%), Positives = 26/46 (56%) Frame = -1 Query: 465 HEQQCKRLVLQYIPLILVNGEKFLEKNDICTIVQACDAGKKTVLGS 328 +++QC V +Y PL+L + ++ +C+ + C + K +LG+ Sbjct: 480 YQKQCDDFVAEYEPLLLEILVEVMDPGFVCSKIGVCPSAYKLLLGT 525
>SYP32_ARATH (Q9LK09) Syntaxin-32 (AtSYP32)| Length = 347 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +1 Query: 157 IIQSIQRMQQQHAAKASRILDTYVQ-QEELVHYVSSGFTRLGVVF--LPSFIAQQ 312 ++Q Q+ QQQ + + DTY+Q + E +H V S L +F L + ++QQ Sbjct: 235 LLQQSQQQQQQQQQQMVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQ 289
>SEN54_SCHPO (O74908) Probable tRNA-splicing endonuclease subunit sen54| (tRNA-intron endonuclease sen54) Length = 384 Score = 29.6 bits (65), Expect = 4.7 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -3 Query: 400 VPREERYMHHRSSMRCWQKDGARVILRGGFAA 305 +P E Y+ R SM CW ++G + L+ ++A Sbjct: 120 LPEETLYLVERGSMECWSEEGLPMSLQAVYSA 151
>FDHD_BACLD (Q65DY4) Protein fdhD homolog| Length = 263 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/61 (27%), Positives = 36/61 (59%) Frame = -1 Query: 459 QQCKRLVLQYIPLILVNGEKFLEKNDICTIVQACDAGKKTVLGSFSGEGLLRDE*RQKDY 280 QQ ++ ++ ++VNGE+F+ T+V + D+ ++ V+G + EG++R + K + Sbjct: 21 QQEDQMATEFPLTVMVNGEEFV------TLVCSPDSLEELVIGFLASEGVIRFKNEIKRF 74 Query: 279 T 277 T Sbjct: 75 T 75
>DSG3_MOUSE (O35902) Desmoglein-3 precursor (130 kDa pemphigus vulgaris antigen| homolog) Length = 993 Score = 29.3 bits (64), Expect = 6.1 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -1 Query: 474 IEGHEQQCKRLVLQYIPLILVNGEKFLEKNDICT 373 IEG + + K + +P + NG F+E +++CT Sbjct: 671 IEGAQPEDKEITNICVPPVTTNGADFMESSEVCT 704
>ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)| (Autophagy-related protein 26) Length = 1585 Score = 28.9 bits (63), Expect = 7.9 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 312 NPPRRMTRAPSFCQHRMLERWCIYRSSR 395 N PR +RAP+ +M E C +RSSR Sbjct: 130 NEPRTSSRAPNTASSQMAESSCDFRSSR 157 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,069,684 Number of Sequences: 219361 Number of extensions: 1406393 Number of successful extensions: 3740 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3740 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
