ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart21b01 |
|---|---|
| Clone Library Name | barley_pub |
>TO204_ARATH (P82805) Mitochondrial import receptor subunit TOM20-4 (Translocase| of outer membrane 20 kDa subunit 4) Length = 187 Score = 42.7 bits (99), Expect = 4e-04 Identities = 20/43 (46%), Positives = 28/43 (65%) Frame = -3 Query: 449 SSNARQSRKKKKTNDFWYDVAGWGTLVVGIGIWVIAANSQPKV 321 SSN+ ++ K+KKT++F YDV GW L + W+ ANSQ V Sbjct: 142 SSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANSQTPV 184
>TO202_ARATH (P82873) Mitochondrial import receptor subunit TOM20-2 (Translocase| of outer membrane 20 kDa subunit 2) Length = 210 Score = 42.0 bits (97), Expect = 7e-04 Identities = 23/41 (56%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = -3 Query: 452 SSSNARQSRKKKKTN-DFWYDVAGWGTLVVGIGIWVIAANS 333 +SSN QS KKKK N +F YDV GW L GI WV A S Sbjct: 162 ASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKS 202
>TOM20_SOLTU (P92792) Mitochondrial import receptor subunit TOM20 (Translocase| of outer membrane 20 kDa subunit) Length = 204 Score = 39.3 bits (90), Expect = 0.005 Identities = 19/40 (47%), Positives = 25/40 (62%) Frame = -3 Query: 452 SSSNARQSRKKKKTNDFWYDVAGWGTLVVGIGIWVIAANS 333 S+S + +S KK K++D YD+ GW L VGI WV A S Sbjct: 154 STSTSTKSSKKTKSSDLKYDIFGWVILAVGIVAWVGFAKS 193
>TO203_ARATH (P82874) Mitochondrial import receptor subunit TOM20-3 (Translocase| of outer membrane 20 kDa subunit 3) Length = 202 Score = 33.5 bits (75), Expect = 0.26 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -3 Query: 425 KKKKTNDFWYDVAGWGTLVVGIGIWVIAANSQPKVELP 312 K KK++D YD GW L +G+ W+ A + V P Sbjct: 164 KNKKSSDAKYDAMGWVILAIGVVAWISFAKANVPVSPP 201
>PACR_RAT (P32215) Pituitary adenylate cyclase-activating polypeptide type IA| receptor precursor (PACAP type IA receptor) (PACAP-R-1) Length = 523 Score = 30.0 bits (66), Expect = 2.8 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = -3 Query: 404 FWYDVAGWGTLVVGIGIWVI 345 +WY + GWGT V + +W + Sbjct: 266 YWYTIIGWGTPTVCVTVWAV 285
>PACR_MOUSE (P70205) Pituitary adenylate cyclase-activating polypeptide type I| receptor precursor (PACAP type I receptor) (PACAP-R-1) Length = 496 Score = 30.0 bits (66), Expect = 2.8 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = -3 Query: 404 FWYDVAGWGTLVVGIGIWVI 345 +WY + GWGT V + +W + Sbjct: 267 YWYTIIGWGTPTVCVTVWAV 286
>YQT1_CAEEL (Q09313) Hypothetical protein F25B5.1| Length = 923 Score = 29.6 bits (65), Expect = 3.7 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -1 Query: 415 RPMTSGMMWLDGGLLSLA 362 RP+TSG++W D GLL +A Sbjct: 173 RPITSGLLWRDSGLLHVA 190
>O1019_MOUSE (Q8VGS3) Olfactory receptor 1019 (Olfactory receptor 180-1)| Length = 310 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 102 HIKRLMSFDKINRIKVAACRKN*QKPQHGNTISSP*LC*VLTIGMPFAGFLSSKHH 269 ++ M++D+ VA CR P H +T+ S +C VL +G FAG +S H Sbjct: 113 YVLAAMAYDRF----VAICR-----PLHYSTLMSKKVCLVLMLGSYFAGLVSLVAH 159
>OXAA_NEIMB (Q9JXS4) Inner membrane protein oxaA| Length = 545 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Frame = +2 Query: 131 DKPHQGRRMSKKLTKTAT-W----KHHFLSITLLSPNNRHAIC 244 D G+ ++ + KT T W +HHF+S +L P R ++C Sbjct: 225 DDAKSGKSEAEYIRKTPTGWLGMIEHHFMSTWILQPKGRQSVC 267
>PACR_BOVIN (Q29627) Pituitary adenylate cyclase-activating polypeptide type I| receptor precursor (PACAP type I receptor) (PACAP-R-1) Length = 513 Score = 29.3 bits (64), Expect = 4.8 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = -3 Query: 404 FWYDVAGWGTLVVGIGIWVI 345 +WY + GWGT V + +W + Sbjct: 284 YWYIIIGWGTPTVCVSVWAM 303
>PACR_HUMAN (P41586) Pituitary adenylate cyclase-activating polypeptide type I| receptor precursor (PACAP type I receptor) (PACAP-R-1) Length = 468 Score = 28.9 bits (63), Expect = 6.3 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -3 Query: 404 FWYDVAGWGTLVVGIGIW 351 +WY + GWGT V + +W Sbjct: 267 YWYTIIGWGTPTVCVTVW 284
>FN3K_HUMAN (Q9H479) Fructosamine-3-kinase (EC 2.7.1.-)| Length = 309 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Frame = +2 Query: 290 VTCEVLVPEVQPWVDCWP-LLPKYRCQRQ----ESPIQPHHTRSHWS 415 VTC +P+V W D WP ++R Q Q E R WS Sbjct: 148 VTCCGFIPQVNEWQDDWPTFFARHRLQAQLDLIEKDYADREARELWS 194
>KS6A3_MOUSE (P18654) Ribosomal protein S6 kinase alpha-3 (EC 2.7.11.1)| (S6K-alpha 3) (90 kDa ribosomal protein S6 kinase 3) (p90-RSK 3) (Ribosomal S6 kinase 2) (RSK-2) (pp90RSK2) (MAP kinase-activated protein kinase 1b) (MAPKAPK1B) Length = 740 Score = 28.9 bits (63), Expect = 6.3 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +2 Query: 323 PWVDCWPLLPKYRCQRQESPIQPHHTRSHWSSSFSLI 433 PW+ W LP+Y+ RQ++ PH + ++++S + Sbjct: 677 PWIVHWDQLPQYQLNRQDA---PHLVKGAMAATYSAL 710
>KS6A3_HUMAN (P51812) Ribosomal protein S6 kinase alpha-3 (EC 2.7.11.1)| (S6K-alpha 3) (90 kDa ribosomal protein S6 kinase 3) (p90-RSK 3) (Ribosomal S6 kinase 2) (RSK-2) (pp90RSK2) (Insulin-stimulated protein kinase 1) (ISPK-1) (MAP kinase-activated protei Length = 740 Score = 28.9 bits (63), Expect = 6.3 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +2 Query: 323 PWVDCWPLLPKYRCQRQESPIQPHHTRSHWSSSFSLI 433 PW+ W LP+Y+ RQ++ PH + ++++S + Sbjct: 677 PWIVHWDQLPQYQLNRQDA---PHLVKGAMAATYSAL 710
>RHAR_YERPS (Q66FF1) HTH-type transcriptional activator rhaR (L-rhamnose operon| transcriptional activator rhaR) Length = 290 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -3 Query: 236 HAYC*DLAKLWRGNGVSMLRFLSIFSTCGDLDAVYLVKGH 117 H +C ++ +WRGNG+ +L TCGD+ + H Sbjct: 36 HQFC-EIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHH 74
>RHAR_YERPE (Q8ZIZ9) HTH-type transcriptional activator rhaR (L-rhamnose operon| transcriptional activator rhaR) Length = 290 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -3 Query: 236 HAYC*DLAKLWRGNGVSMLRFLSIFSTCGDLDAVYLVKGH 117 H +C ++ +WRGNG+ +L TCGD+ + H Sbjct: 36 HQFC-EIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHH 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,151,405 Number of Sequences: 219361 Number of extensions: 1485709 Number of successful extensions: 3527 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3455 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3526 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
