ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCXN_PORPU (P51364) Hypothetical 26.5 kDa protein in ycf44-cpcG ... 29 6.8
2DGKE_MOUSE (Q9R1C6) Diacylglycerol kinase epsilon (EC 2.7.1.107)... 29 6.8
3DGKE_HUMAN (P52429) Diacylglycerol kinase epsilon (EC 2.7.1.107)... 28 8.9
4Y826_METTH (O26914) Hypothetical UPF0004 protein MTH826 28 8.9

>YCXN_PORPU (P51364) Hypothetical 26.5 kDa protein in ycf44-cpcG intergenic|
           region (ORF240)
          Length = 240

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = -2

Query: 269 SLFCTTTTGPFVSYLWYPFQTSGQTVLDLQLEFDLFCSSCK 147
           S F TT + PF++ LW PF  SG T+L     F LF S  K
Sbjct: 202 SRFLTTASSPFLNNLWAPF--SG-TILLSAGTFSLFSSILK 239



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>DGKE_MOUSE (Q9R1C6) Diacylglycerol kinase epsilon (EC 2.7.1.107) (Diglyceride|
           kinase epsilon) (DGK-epsilon) (DAG kinase epsilon)
          Length = 564

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
 Frame = -2

Query: 455 CTGRRVDTGAYSKAQGLHACRRVYL--------LPCHSSIRARSWLAPKCNTCMFLFCSV 300
           C G RVD G   K      C+ + L        +P H  IR      P C+ C+F     
Sbjct: 87  CCGLRVDEGCLKKVDKRFPCKEIMLKNDKAADAMP-HHWIRGN---VPLCSYCVFCRQQC 142

Query: 299 GHAEKTQVARSLFCTTT 249
           G   K    R ++C  T
Sbjct: 143 GSQPKLCDYRCIWCQKT 159



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>DGKE_HUMAN (P52429) Diacylglycerol kinase epsilon (EC 2.7.1.107) (Diglyceride|
           kinase epsilon) (DGK-epsilon) (DAG kinase epsilon)
          Length = 567

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
 Frame = -2

Query: 455 CTGRRVDTGAYSKAQGLHACRRVYLLPCHSSIRA--RSWL---APKCNTCMFLFCSVGHA 291
           C G RVD G   KA     C+ + L      + A    W+    P C+ CM      G  
Sbjct: 89  CCGLRVDEGCLRKADKRFQCKEIMLKNDTKVLDAMPHHWIRGNVPLCSYCMVCKQQCGCQ 148

Query: 290 EKTQVARSLFCTTT 249
            K    R ++C  T
Sbjct: 149 PKLCDYRCIWCQKT 162



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>Y826_METTH (O26914) Hypothetical UPF0004 protein MTH826|
          Length = 424

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 369 FVHTCSIVARTKM*YVHVSVLFGRARGENSSSTEPFLHDYNRAFRVL 229
           F+ TCS++   K  ++H+S    R R  +SS  E    +  R  R L
Sbjct: 309 FMDTCSLLEEVKPSFIHLSKYRHRPRARSSSLDEIDFRELRRRSRAL 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,586,664
Number of Sequences: 219361
Number of extensions: 1477152
Number of successful extensions: 4041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4039
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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