ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC111057.6| Mus musculus chromosome 15, clone RP24-572A2, com... 42 1.6
2gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com... 42 1.6
3dbj|AP005209.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.6
4gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 6.3
5gb|AC137606.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
6gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
7ref|XM_418162.1| PREDICTED: Gallus gallus similar to type I hair... 40 6.3
8emb|CR932807.1| Mus musculus chromosome 2, clone ResGen-172B22 s... 40 6.3
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
11dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
12emb|AL928877.6| Mouse DNA sequence from clone RP23-52D18 on chro... 40 6.3

>gb|AC111057.6| Mus musculus chromosome 15, clone RP24-572A2, complete sequence
          Length = 127727

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 71   tctgggttgtgagtcaaggac 91
            |||||||||||||||||||||
Sbjct: 9125 tctgggttgtgagtcaaggac 9145



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>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 71   tctgggttgtgagtcaaggac 91
            |||||||||||||||||||||
Sbjct: 7316 tctgggttgtgagtcaaggac 7296



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>dbj|AP005209.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-138E9, complete
             sequence
          Length = 161797

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 427   gccccagtatccacccttctc 447
             |||||||||||||||||||||
Sbjct: 54920 gccccagtatccacccttctc 54900



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>gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OABb-307A1, complete
             sequence
          Length = 195598

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   cttgtgccttgctgtatgcc 429
             ||||||||||||||||||||
Sbjct: 83618 cttgtgccttgctgtatgcc 83599



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>gb|AC137606.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0004B23,
              complete sequence
          Length = 153136

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 432    agtatccacccttctccctg 451
              ||||||||||||||||||||
Sbjct: 143409 agtatccacccttctccctg 143390



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>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01,
             complete sequence
          Length = 156691

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   agtatccacccttctccctg 451
             ||||||||||||||||||||
Sbjct: 66260 agtatccacccttctccctg 66241



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>ref|XM_418162.1| PREDICTED: Gallus gallus similar to type I hair keratin KA31
            (LOC420039), mRNA
          Length = 2583

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 405  cagtccttgtgccttgctgt 424
            ||||||||||||||||||||
Sbjct: 1529 cagtccttgtgccttgctgt 1510



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>emb|CR932807.1| Mus musculus chromosome 2, clone ResGen-172B22 strain 129/Sv, complete
             sequence
          Length = 138840

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    aggacagacttgcagctgggacaa 110
             |||||||||||||||||| |||||
Sbjct: 81537 aggacagacttgcagctgagacaa 81514



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 432     agtatccacccttctccctg 451
               ||||||||||||||||||||
Sbjct: 8657837 agtatccacccttctccctg 8657818



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 305      aacagaacagaaacatgcac 324
                ||||||||||||||||||||
Sbjct: 25756970 aacagaacagaaacatgcac 25756951



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>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039G05
          Length = 138429

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   aacagaacagaaacatgcac 324
             ||||||||||||||||||||
Sbjct: 59434 aacagaacagaaacatgcac 59415



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>emb|AL928877.6| Mouse DNA sequence from clone RP23-52D18 on chromosome 2, complete
             sequence
          Length = 201120

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    aggacagacttgcagctgggacaa 110
             |||||||||||||||||| |||||
Sbjct: 55712 aggacagacttgcagctgagacaa 55689


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,708,999
Number of Sequences: 3902068
Number of extensions: 3708999
Number of successful extensions: 58990
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58955
Number of HSP's gapped (non-prelim): 35
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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