ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21a07 |
|---|---|
| Clone Library Name | barley_pub |
>T2FB_XENLA (Q03123) Transcription initiation factor IIF beta subunit (EC| 3.6.1.-) (ATP-dependent helicase gtf2f2) (TFIIF-beta) (Transcription initiation factor RAP30) Length = 264 Score = 67.0 bits (162), Expect = 3e-11 Identities = 32/72 (44%), Positives = 47/72 (65%) Frame = -2 Query: 464 KPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGP 285 K D KR R D+ ++ +++F FEK + +K LV T QP +LKEIL D+ +YN +G Sbjct: 184 KKDDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGT 243 Query: 284 NQGTHELKPEYK 249 ++ T ELKPEY+ Sbjct: 244 HKNTWELKPEYR 255
>T2FB_YEAST (P41896) Transcription initiation factor IIF beta subunit (EC| 3.6.1.-) (ATP-dependent helicase TFG2) (TFIIF-beta) (TFIIF medium subunit) (Transcription factor G 54 kDa subunit) Length = 400 Score = 63.9 bits (154), Expect = 2e-10 Identities = 30/75 (40%), Positives = 47/75 (62%) Frame = -2 Query: 458 SDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGPNQ 279 S++K R ++E+ + +FKLF++ W+LK L + T QPE LKE L+ + K+GP Sbjct: 287 SNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYA 346 Query: 278 GTHELKPEYKKSSED 234 + L+PEYKK E+ Sbjct: 347 FKYTLRPEYKKLKEE 361
>T2FB_DROME (P41900) Transcription initiation factor IIF beta subunit (EC| 3.6.1.-) (ATP-dependent helicase TfIIF-beta) (TFIIF-beta) Length = 277 Score = 63.5 bits (153), Expect = 3e-10 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 7/88 (7%) Frame = -2 Query: 464 KPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGP 285 K ++ K+ R D+ + +++F FEK + +K LV+ T+QP +LKEIL D+C YN + P Sbjct: 186 KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNP 245 Query: 284 NQGTHELKPEY-------KKSSEDAAGA 222 ++ ELK EY KK E +G+ Sbjct: 246 HKNMWELKKEYRHYKTEEKKEEEHKSGS 273
>T2FB_RAT (Q01750) Transcription initiation factor IIF beta subunit (EC| 3.6.1.-) (ATP-dependent helicase GTF2F2) (TFIIF-beta) (Transcription initiation factor RAP30) Length = 249 Score = 62.0 bits (149), Expect = 8e-10 Identities = 31/72 (43%), Positives = 46/72 (63%) Frame = -2 Query: 464 KPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGP 285 K D KR R D++ + +++F FEK + LK LV T QP +LKEIL ++ + N +G Sbjct: 169 KKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGI 228 Query: 284 NQGTHELKPEYK 249 ++ T ELKPEY+ Sbjct: 229 HKNTWELKPEYR 240
>T2FB_MOUSE (Q8R0A0) Transcription initiation factor IIF beta subunit (EC| 3.6.1.-) (ATP-dependent helicase GTF2F2) (TFIIF-beta) Length = 249 Score = 62.0 bits (149), Expect = 8e-10 Identities = 31/72 (43%), Positives = 46/72 (63%) Frame = -2 Query: 464 KPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGP 285 K D KR R D++ + +++F FEK + LK LV T QP +LKEIL ++ + N +G Sbjct: 169 KKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGI 228 Query: 284 NQGTHELKPEYK 249 ++ T ELKPEY+ Sbjct: 229 HKNTWELKPEYR 240
>T2FB_HUMAN (P13984) Transcription initiation factor IIF beta subunit (EC| 3.6.1.-) (ATP-dependent helicase GTF2F2) (TFIIF-beta) (Transcription initiation factor RAP30) Length = 249 Score = 62.0 bits (149), Expect = 8e-10 Identities = 31/72 (43%), Positives = 46/72 (63%) Frame = -2 Query: 464 KPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGP 285 K D KR R D++ + +++F FEK + LK LV T QP +LKEIL ++ + N +G Sbjct: 169 KKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGI 228 Query: 284 NQGTHELKPEYK 249 ++ T ELKPEY+ Sbjct: 229 HKNTWELKPEYR 240
>T111_SCHPO (Q09813) Putative transcription initiation factor TFIID 111 kDa| subunit (TBP-associated factor 111 kDa) (TAFII-111) Length = 979 Score = 33.1 bits (74), Expect = 0.42 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = -2 Query: 461 PSDVKRTRRDRRELENIIFKLFEKQPNWAL---KALVQETDQPEQFLKEILNDLCMYNKR 291 P K T + L+ ++F+L + PN L + +DQ E +++ L + Y K+ Sbjct: 589 PHSRKVTTASKNRLKMLVFRLIRRSPNGGLFIRQLSKHFSDQNEMQIRQRLKEFMEYKKK 648 Query: 290 GPNQGTHELK 261 G G +LK Sbjct: 649 GDGPGYWKLK 658
>ZN694_HUMAN (Q63HK3) Zinc finger protein 694| Length = 967 Score = 31.6 bits (70), Expect = 1.2 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Frame = -2 Query: 425 ELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGPNQGTHE------- 267 E+E + EK P WA + +++ +D E F ++ C + GP++ + Sbjct: 14 EVEGCLIMKVEKDPEWASEPILEGSDSSETF-RKCFRQFCYEDVTGPHEAFSKLWELCCR 72 Query: 266 -LKPEYKKSSE 237 LKPE + + Sbjct: 73 WLKPEMRSKEQ 83
>NANE_FUSNN (Q8RDN5) Putative N-acetylmannosamine-6-phosphate 2-epimerase (EC| 5.1.3.9) (ManNAc-6-P epimerase) Length = 224 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -2 Query: 449 KRTRRDRRELENIIFKLFEKQPNWALKALVQETDQ 345 KR R DR++L+N I ++ EK PN A + D+ Sbjct: 103 KRERPDRKDLKNFIAEIKEKYPNQLFMADISSVDE 137
>SET2_CAEEL (Q18221) Protein set-2| Length = 1507 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -3 Query: 346 SQSNSS-RRY*TTSVCTTSEGRTRAHMSSSPSTRSHRRMPP 227 SQ+ SS R++ TTS +T + H +S P+ +SH PP Sbjct: 516 SQNRSSERKFQTTSSSSTRRELSSTHTNSVPNLKSHETPPP 556
>PININ_CANFA (P79149) Pinin| Length = 773 Score = 29.6 bits (65), Expect = 4.6 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 349 TSQSNSSRRY*TTSVCTTSEGRTRAHMSSSPSTRSHRRMPPALRED 212 +S S SSRR ++S ++SE R+R+ R HRR R D Sbjct: 667 SSTSGSSRRDSSSSTTSSSESRSRSRGRGHNRDRKHRRSVDRKRRD 712
>ERCC6_HUMAN (Q03468) DNA excision repair protein ERCC-6 (EC 3.6.1.-)| (ATP-dependent helicase ERCC6) (Cockayne syndrome protein CSB) Length = 1493 Score = 28.9 bits (63), Expect = 7.8 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -2 Query: 329 KEILNDLCMYNKRGPNQGTHELKPEY 252 +E+L +LC +++ +G +LKPEY Sbjct: 1467 RELLRNLCTFHRTSGGEGIWKLKPEY 1492 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,971,802 Number of Sequences: 219361 Number of extensions: 1399211 Number of successful extensions: 3815 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3699 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3811 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
