ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21a06 |
|---|---|
| Clone Library Name | barley_pub |
>TMEDA_FUGRU (Q90515) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (S31III125) Length = 213 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/79 (34%), Positives = 38/79 (48%) Frame = -3 Query: 481 NEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXX 302 N +AK E L P+ V++ L++ ES+ + Y+K R+ R TNEST RV Sbjct: 128 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 187 Query: 301 XXXXXXXXALQVVYIRRLF 245 QV Y+RR F Sbjct: 188 MFCLIGLATWQVFYLRRFF 206
>TMEDA_RAT (Q63584) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/79 (34%), Positives = 38/79 (48%) Frame = -3 Query: 481 NEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXX 302 N +AK E L P+ V++ L++ ES+ + Y+K R+ R TNEST RV Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 301 XXXXXXXXALQVVYIRRLF 245 QV Y+RR F Sbjct: 194 MFCLIGLATWQVFYLRRFF 212
>TMEDA_RABIT (Q28735) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/79 (34%), Positives = 38/79 (48%) Frame = -3 Query: 481 NEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXX 302 N +AK E L P+ V++ L++ ES+ + Y+K R+ R TNEST RV Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 301 XXXXXXXXALQVVYIRRLF 245 QV Y+RR F Sbjct: 194 MFCLIGLATWQVFYLRRFF 212
>TMEDA_MOUSE (Q9D1D4) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/79 (34%), Positives = 38/79 (48%) Frame = -3 Query: 481 NEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXX 302 N +AK E L P+ V++ L++ ES+ + Y+K R+ R TNEST RV Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 301 XXXXXXXXALQVVYIRRLF 245 QV Y+RR F Sbjct: 194 MFCLIGLATWQVFYLRRFF 212
>TMEDA_MESAU (O35587) Transmembrane protein Tmp21 precursor (21 kDa| transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/79 (34%), Positives = 38/79 (48%) Frame = -3 Query: 481 NEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXX 302 N +AK E L P+ V++ L++ ES+ + Y+K R+ R TNEST RV Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 301 XXXXXXXXALQVVYIRRLF 245 QV Y+RR F Sbjct: 194 MLCLIGLATWQVFYLRRFF 212
>TMEDA_HUMAN (P49755) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (p24delta) (S31III125) (S31I125) (Tmp-21-I) Length = 219 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/79 (34%), Positives = 38/79 (48%) Frame = -3 Query: 481 NEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXX 302 N +AK E L P+ V++ L++ ES+ + Y+K R+ R TNEST RV Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 301 XXXXXXXXALQVVYIRRLF 245 QV Y+RR F Sbjct: 194 MFCLIGLATWQVFYLRRFF 212
>TMEDA_BOVIN (Q5E971) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/79 (34%), Positives = 38/79 (48%) Frame = -3 Query: 481 NEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXX 302 N +AK E L P+ V++ L++ ES+ + Y+K R+ R TNEST RV Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 301 XXXXXXXXALQVVYIRRLF 245 QV Y+RR F Sbjct: 194 MFCLIGLATWQVFYLRRFF 212
>TMEDA_PONPY (Q5RE32) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 48.5 bits (114), Expect = 1e-05 Identities = 26/79 (32%), Positives = 38/79 (48%) Frame = -3 Query: 481 NEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXX 302 N +AK E L P+ V++ L++ ES+ + Y++ R+ R TNEST RV Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFS 193 Query: 301 XXXXXXXXALQVVYIRRLF 245 QV Y+RR F Sbjct: 194 MFCLIGLATWQVFYLRRFF 212
>ERV25_YEAST (P54837) Protein ERV25 precursor| Length = 211 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/77 (32%), Positives = 38/77 (49%) Frame = -3 Query: 475 HNLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXXXX 296 + ++ +E L PI V++ ++E + + E YLK R+ R R TNEST RRV Sbjct: 129 NKISANEKLKPIEVELRRVEEITDEIVDELTYLKNREERLRDTNESTNRRVRNFSILVII 188 Query: 295 XXXXXXALQVVYIRRLF 245 QV Y++ F Sbjct: 189 VLSSLGVWQVNYLKNYF 205
>TMED9_MOUSE (Q99KF1) Transmembrane emp24 domain-containing protein 9 precursor| (Glycoprotein 25L2) Length = 214 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = -3 Query: 502 IHVGHIPNEH-NLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRR 326 I VG N++ +A + L + +++ +L E +E + EQ Y + R+ R R T+EST +R Sbjct: 122 IQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQR 181 Query: 325 V 323 V Sbjct: 182 V 182
>TMED9_HUMAN (Q9BVK6) Transmembrane emp24 domain-containing protein 9 precursor| (Glycoprotein 25L2) Length = 214 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = -3 Query: 502 IHVGHIPNEH-NLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRR 326 I VG N++ +A + L + +++ +L E +E + EQ Y + R+ R R T+EST +R Sbjct: 122 IQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQR 181 Query: 325 V 323 V Sbjct: 182 V 182
>TMED9_BOVIN (Q3T133) Transmembrane emp24 domain-containing protein 9 precursor| Length = 235 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = -3 Query: 502 IHVGHIPNEH-NLAKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRR 326 I VG N++ +A + L + +++ +L E +E + EQ Y + R+ R R T+EST +R Sbjct: 143 IQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQR 202 Query: 325 V 323 V Sbjct: 203 V 203
>SEL9_CAEEL (O17528) Suppressor/enhancer of lin-12 protein 9 precursor| Length = 203 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = -3 Query: 430 IAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXXXXXXXXXXALQVVYIRR 251 + EL AL SV EQ+Y++ R+ HR+ NE+T RV Q+ Y++R Sbjct: 136 VRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKR 195 Query: 250 LF 245 F Sbjct: 196 FF 197
>EMP24_YEAST (P32803) Endosomal P24B protein precursor (24 kDa endomembrane| protein) (Basic 24 kDa late endocytic intermediate component) Length = 203 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = -3 Query: 460 DEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXXXXXXXXX 281 D + + ++ + +L + V EQ Y+ R+ HR+T EST RV Sbjct: 126 DPNTNTLDSAVRKLSKLTREVKDEQSYIVIRERTHRNTAESTNDRVKWWSIFQLGVVIAN 185 Query: 280 XALQVVYIRRLF 245 Q+ Y+RR F Sbjct: 186 SLFQIYYLRRFF 197
>YE98_SCHPO (O13770) Hypothetical protein C17A5.08 precursor| Length = 210 Score = 37.7 bits (86), Expect = 0.018 Identities = 21/77 (27%), Positives = 34/77 (44%) Frame = -3 Query: 466 AKDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTRRRVXXXXXXXXXXXX 287 AKD D + + E+ AL + Q Y K R+ R+ T +ST+ R+ Sbjct: 129 AKDYKKDSMQSTVLEISTALSEIDRVQNYFKTREHRNYSTVKSTQARIFWFSLAESIMVV 188 Query: 286 XXXALQVVYIRRLFSKN 236 ALQV ++ F ++ Sbjct: 189 ALSALQVFIVKTFFKRS 205
>MYCBP_HUMAN (Q99417) C-Myc-binding protein (Associate of Myc 1) (AMY-1)| Length = 102 Score = 30.4 bits (67), Expect = 2.9 Identities = 13/44 (29%), Positives = 27/44 (61%) Frame = -3 Query: 463 KDEHLDPINVKIAELKEALESVTAEQKYLKARDARHRHTNESTR 332 ++ ++ + +++AE+KE E++ E K LKA+ A++ E R Sbjct: 57 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEKR 100
>KGX51_CENSC (Q86QU2) Potassium channel toxin gamma-KTx 5.1 (Ergtoxin-like| protein 5) (ErgTx5) (CsErg5) (CsErgTx5) Length = 47 Score = 30.0 bits (66), Expect = 3.8 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -2 Query: 314 HNGGVCSFHGCQCVASRLH 258 HNGG C F C CV S+++ Sbjct: 29 HNGGTCMFFKCMCVNSKMN 47
>EF1A_ARTSA (P02993) Elongation factor 1-alpha (EF-1-alpha)| Length = 461 Score = 29.6 bits (65), Expect = 5.0 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -3 Query: 499 HVGHIPNEHNLAKDEHLDPINVKIAELKEALESVT-----AEQKYLKARDA 362 H G I N + D H I K AE+KE + T AE K++K+ DA Sbjct: 348 HPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDA 398
>TIE1_BOVIN (Q06805) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1136 Score = 29.6 bits (65), Expect = 5.0 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Frame = -1 Query: 336 PEGVSCSTQWRSMQL--SWLPVRCKSFTSAACSVKTWGT----TGSRAPSTWHG 193 P G SC + WR Q + P R + C + GT +G PS WHG Sbjct: 286 PYGCSCGSGWRGSQCQEACAPGRFGADCHLQCQCQNGGTCDRFSGCVCPSGWHG 339
>POL1_GCMV (P13025) RNA1 polyprotein (P1) [Contains: P1A protein (1A)| (Protease cofactor); Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (1B) (Membrane-binding protein); Viral genome-linked protein (1C-VPg); Picornain 3C-like pr Length = 2252 Score = 29.6 bits (65), Expect = 5.0 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -1 Query: 261 TSAACSVKTWGTTGSRAPSTWHGSSRWLQQGIFSVIL*HFTPSL 130 TSAACSVK G + + L +G+FSV++ HF +L Sbjct: 429 TSAACSVKNAFLDGCEL------TGKRLSEGVFSVVIGHFREAL 466
>CCL26_HUMAN (Q9Y258) Small inducible cytokine A26 precursor (CCL26) (Eotaxin-3)| (Macrophage inflammatory protein 4-alpha) (MIP-4-alpha) (Thymic stroma chemokine-1) (TSC-1) (CC chemokine IMAC) Length = 94 Score = 29.3 bits (64), Expect = 6.5 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Frame = -1 Query: 369 VTLVTDTQTRAPE-GVSCSTQWRSMQLSWLPVRCKSFTSAACSVKTWGTTGSRAPST-WH 196 ++L T TR + +C Q+ L W VR FTS +CS + T R H Sbjct: 16 LSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQRAVIFTTKRGKKVCTH 75 Query: 195 GSSRWLQQGI 166 +W+Q+ I Sbjct: 76 PRKKWVQKYI 85
>FTSZ_MYCKA (Q9KH25) Cell division protein ftsZ| Length = 386 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -2 Query: 236 RGVQQGLGHRLLGMAAADGSNREYFLSYCSISPPLFGASLK 114 +GV G G L+G+ +A G R + +I+ PL AS++ Sbjct: 212 KGVMSGAGTALMGIGSARGDGRALKAAEIAINSPLLEASME 252
>FBN2_MOUSE (Q61555) Fibrillin-2 precursor| Length = 2907 Score = 28.9 bits (63), Expect = 8.5 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -2 Query: 428 CRAEGSTGICHCRAEVPKST*RSSPTHKREHQKACHV-LHNGGVCSFHGCQC 276 CR G C S+ + SPT R+ + C V NGG C+ CQC Sbjct: 115 CRNSCGDGFCSRPNMCTCSSGQISPTCGRKSIQQCSVRCMNGGTCADDHCQC 166
>PAAK_ECOLI (P76085) Phenylacetate-coenzyme A ligase (EC 6.2.1.30)| (Phenylacetyl-CoA ligase) (PA-CoA ligase) Length = 437 Score = 28.9 bits (63), Expect = 8.5 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -3 Query: 454 HLDPINVKIAELKEALESVTAEQKYLKARDARHR 353 HLD ++VK+ ELKE+ ++T EQ+ RHR Sbjct: 367 HLDSLSVKV-ELKESSLTLTHEQRCQVCHQLRHR 399
>CLPB_MYCPN (P75247) Chaperone clpB| Length = 715 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 481 NEHNLAKDEHLDPINVKIAELKEALESVTAEQK 383 N N K HLD + ++ ELK+ +S+TAE K Sbjct: 291 NADNKKKQGHLDNLKQQLDELKKKRDSLTAEWK 323 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,267,390 Number of Sequences: 219361 Number of extensions: 1511877 Number of successful extensions: 3667 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3667 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
