ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21a06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469701.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1091 Score = 365 bits (184), Expect = 9e-98 Identities = 265/292 (90%) Strand = Plus / Minus Query: 219 accctgttgtaccccacgtttttactgaacaggcggcggatgtaaacgacttgcaacgca 278 ||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||||| || Sbjct: 788 accctgttgtatgccacgtttttgctgaataggcgacggatgtaaacaacttgcaaagcg 729 Query: 279 ctggcagccatgaaagctgcatactccgccattgtgtagaacatgacacgccttctggtg 338 || ||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 728 cttgcacccatgaaagctaggtactccgctattgtgtagaacatgacacgccttcttgtg 669 Query: 339 ctctcgtttgtgtgtcggtgacgagcgtcacgtgcttttaggtacttctgctcggcagtg 398 ||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct: 668 ctctcatttgtgtgtcggtgacgagcttcacgggctttaaggtatttctgctcagcagtg 609 Query: 399 acagattccagtgcttccttcagctctgcaattttcacattgatagggtccaagtgctca 458 |||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 608 acagattctaatgcttccttcagctccgctattttcacattgatagggtccaagtgctca 549 Query: 459 tctttcgccagattgtgctcattgggtatgtgcccaacatgaatgtagaaag 510 ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 548 tcttttgccagattgtgctcgttgggtatgtgcccaacatgaatgtagaaag 497
>dbj|AK059983.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F12, full insert sequence Length = 1084 Score = 365 bits (184), Expect = 9e-98 Identities = 265/292 (90%) Strand = Plus / Minus Query: 219 accctgttgtaccccacgtttttactgaacaggcggcggatgtaaacgacttgcaacgca 278 ||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||||| || Sbjct: 784 accctgttgtatgccacgtttttgctgaataggcgacggatgtaaacaacttgcaaagcg 725 Query: 279 ctggcagccatgaaagctgcatactccgccattgtgtagaacatgacacgccttctggtg 338 || ||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 724 cttgcacccatgaaagctaggtactccgctattgtgtagaacatgacacgccttcttgtg 665 Query: 339 ctctcgtttgtgtgtcggtgacgagcgtcacgtgcttttaggtacttctgctcggcagtg 398 ||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct: 664 ctctcatttgtgtgtcggtgacgagcttcacgggctttaaggtatttctgctcagcagtg 605 Query: 399 acagattccagtgcttccttcagctctgcaattttcacattgatagggtccaagtgctca 458 |||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 604 acagattctaatgcttccttcagctccgctattttcacattgatagggtccaagtgctca 545 Query: 459 tctttcgccagattgtgctcattgggtatgtgcccaacatgaatgtagaaag 510 ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 544 tcttttgccagattgtgctcgttgggtatgtgcccaacatgaatgtagaaag 493
>gb|AY106386.1| Zea mays PCO090181 mRNA sequence Length = 1192 Score = 335 bits (169), Expect = 8e-89 Identities = 259/289 (89%) Strand = Plus / Minus Query: 222 ctgttgtaccccacgtttttactgaacaggcggcggatgtaaacgacttgcaacgcactg 281 |||||||| ||||| ||||||||||||| |||||||||||| | ||| |||||||| || Sbjct: 893 ctgttgtatcccacatttttactgaacaagcggcggatgtagaggacctgcaacgcgcta 834 Query: 282 gcagccatgaaagctgcatactccgccattgtgtagaacatgacacgccttctggtgctc 341 |||||||||||||| ||||||||||| || ||||||||||||||| ||||||||||| Sbjct: 833 gcagccatgaaagccaggtactccgccatcgtatagaacatgacacgctttctggtgctc 774 Query: 342 tcgtttgtgtgtcggtgacgagcgtcacgtgcttttaggtacttctgctcggcagtgaca 401 || || |||||||||||||| || || |||||||||||||||||||||||||| || || Sbjct: 773 tcattggtgtgtcggtgacgggcttcgcgtgcttttaggtacttctgctcggcggtaacg 714 Query: 402 gattccagtgcttccttcagctctgcaattttcacattgatagggtccaagtgctcatct 461 ||||| | ||||||||||||||| || ||||| || |||||||||||||||||||||||| Sbjct: 713 gattctaatgcttccttcagctccgcgattttaacgttgatagggtccaagtgctcatct 654 Query: 462 ttcgccagattgtgctcattgggtatgtgcccaacatgaatgtagaaag 510 |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 653 ttcgccagattgtgctcattgggtatgtgcccaacatggatgtagaaag 605
>dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120I03, full insert sequence Length = 2829 Score = 234 bits (118), Expect = 2e-58 Identities = 151/162 (93%) Strand = Plus / Minus Query: 349 tgtgtcggtgacgagcgtcacgtgcttttaggtacttctgctcggcagtgacagattcca 408 |||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||| | Sbjct: 1662 tgtgtcggtgacgagcttcacgggctttaaggtatttctgctcagcagtgacagattcta 1603 Query: 409 gtgcttccttcagctctgcaattttcacattgatagggtccaagtgctcatctttcgcca 468 ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| Sbjct: 1602 atgcttccttcagctccgctattttcacattgatagggtccaagtgctcatcttttgcca 1543 Query: 469 gattgtgctcattgggtatgtgcccaacatgaatgtagaaag 510 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1542 gattgtgctcgttgggtatgtgcccaacatgaatgtagaaag 1501 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 219 accctgttgtaccccacgtttttactgaacaggcggcggatgtaaacgacttgcaacgca 278 ||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||||| || Sbjct: 2598 accctgttgtatgccacgtttttgctgaataggcgacggatgtaaacaacttgcaaagcg 2539 Query: 279 ctggcagccatgaaagctgcatactccgccattgtgtagaacatgacacgccttctggtg 338 || ||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 2538 cttgcacccatgaaagctaggtactccgctattgtgtagaacatgacacgccttcttgtg 2479 Query: 339 ctctcgtttg 348 ||||| |||| Sbjct: 2478 ctctcatttg 2469
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 145 bits (73), Expect = 2e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 349 tgtgtcggtgacgagcgtcacgtgcttttaggtacttctgctcggcagtgacagattcca 408 |||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||| | Sbjct: 30305222 tgtgtcggtgacgagcttcacgggctttaaggtatttctgctcagcagtgacagattcta 30305281 Query: 409 gtgcttccttcagctctgcaattttcacattgatagggtccaagtgctc 457 ||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 30305282 atgcttccttcagctccgctattttcacattgatagggtccaagtgctc 30305330 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Plus Query: 219 accctgttgtaccccacgtttttactgaacaggcggcggatgtaaacgacttgcaacgca 278 ||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||||| || Sbjct: 30304286 accctgttgtatgccacgtttttgctgaataggcgacggatgtaaacaacttgcaaagcg 30304345 Query: 279 ctggcagccatgaaagctgcatactccgccattgtgtagaacatgacacgccttctggtg 338 || ||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 30304346 cttgcacccatgaaagctaggtactccgctattgtgtagaacatgacacgccttcttgtg 30304405 Query: 339 ctctcgtttg 348 ||||| |||| Sbjct: 30304406 ctctcatttg 30304415 Score = 91.7 bits (46), Expect = 2e-15 Identities = 52/54 (96%) Strand = Plus / Plus Query: 457 catctttcgccagattgtgctcattgggtatgtgcccaacatgaatgtagaaag 510 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 30305511 catcttttgccagattgtgctcgttgggtatgtgcccaacatgaatgtagaaag 30305564
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 145 bits (73), Expect = 2e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 349 tgtgtcggtgacgagcgtcacgtgcttttaggtacttctgctcggcagtgacagattcca 408 |||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||| | Sbjct: 96902 tgtgtcggtgacgagcttcacgggctttaaggtatttctgctcagcagtgacagattcta 96961 Query: 409 gtgcttccttcagctctgcaattttcacattgatagggtccaagtgctc 457 ||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 96962 atgcttccttcagctccgctattttcacattgatagggtccaagtgctc 97010 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Plus Query: 219 accctgttgtaccccacgtttttactgaacaggcggcggatgtaaacgacttgcaacgca 278 ||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||||| || Sbjct: 95966 accctgttgtatgccacgtttttgctgaataggcgacggatgtaaacaacttgcaaagcg 96025 Query: 279 ctggcagccatgaaagctgcatactccgccattgtgtagaacatgacacgccttctggtg 338 || ||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 96026 cttgcacccatgaaagctaggtactccgctattgtgtagaacatgacacgccttcttgtg 96085 Query: 339 ctctcgtttg 348 ||||| |||| Sbjct: 96086 ctctcatttg 96095 Score = 91.7 bits (46), Expect = 2e-15 Identities = 52/54 (96%) Strand = Plus / Plus Query: 457 catctttcgccagattgtgctcattgggtatgtgcccaacatgaatgtagaaag 510 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 97191 catcttttgccagattgtgctcgttgggtatgtgcccaacatgaatgtagaaag 97244
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 145 bits (73), Expect = 2e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 349 tgtgtcggtgacgagcgtcacgtgcttttaggtacttctgctcggcagtgacagattcca 408 |||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||| | Sbjct: 30396644 tgtgtcggtgacgagcttcacgggctttaaggtatttctgctcagcagtgacagattcta 30396703 Query: 409 gtgcttccttcagctctgcaattttcacattgatagggtccaagtgctc 457 ||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 30396704 atgcttccttcagctccgctattttcacattgatagggtccaagtgctc 30396752 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Plus Query: 219 accctgttgtaccccacgtttttactgaacaggcggcggatgtaaacgacttgcaacgca 278 ||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||||| || Sbjct: 30395708 accctgttgtatgccacgtttttgctgaataggcgacggatgtaaacaacttgcaaagcg 30395767 Query: 279 ctggcagccatgaaagctgcatactccgccattgtgtagaacatgacacgccttctggtg 338 || ||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 30395768 cttgcacccatgaaagctaggtactccgctattgtgtagaacatgacacgccttcttgtg 30395827 Query: 339 ctctcgtttg 348 ||||| |||| Sbjct: 30395828 ctctcatttg 30395837 Score = 91.7 bits (46), Expect = 2e-15 Identities = 52/54 (96%) Strand = Plus / Plus Query: 457 catctttcgccagattgtgctcattgggtatgtgcccaacatgaatgtagaaag 510 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 30396933 catcttttgccagattgtgctcgttgggtatgtgcccaacatgaatgtagaaag 30396986
>ref|NM_113184.4| Arabidopsis thaliana protein carrier AT3G22845 mRNA, complete cds Length = 908 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 311 tgtgtagaacatgacacgccttctggtgctctcgtttgtgtgtcggtgacgagcgtcacg 370 ||||||||| || || ||| |||| |||||||| || || || |||||||||| |||||| Sbjct: 615 tgtgtagaatatcactcgctttctcgtgctctcattcgtatgacggtgacgagtgtcacg 556 Query: 371 tgcttttaggtacttctgctcggcagtgacagattcca 408 ||||| | ||||||||||| ||| |||||||||| Sbjct: 555 agctttcaaatacttctgctcagcaacaacagattcca 518
>gb|AY093742.1| Arabidopsis thaliana AT3g22845/MWI23_22 mRNA, complete cds Length = 645 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 311 tgtgtagaacatgacacgccttctggtgctctcgtttgtgtgtcggtgacgagcgtcacg 370 ||||||||| || || ||| |||| |||||||| || || || |||||||||| |||||| Sbjct: 549 tgtgtagaatatcactcgctttctcgtgctctcattcgtatgacggtgacgagtgtcacg 490 Query: 371 tgcttttaggtacttctgctcggcagtgacagattcca 408 ||||| | ||||||||||| ||| |||||||||| Sbjct: 489 agctttcaaatacttctgctcagcaacaacagattcca 452
>gb|AY070742.1| Arabidopsis thaliana AT3g22845/MWI23_22 mRNA, complete cds Length = 891 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 311 tgtgtagaacatgacacgccttctggtgctctcgtttgtgtgtcggtgacgagcgtcacg 370 ||||||||| || || ||| |||| |||||||| || || || |||||||||| |||||| Sbjct: 614 tgtgtagaatatcactcgctttctcgtgctctcattcgtatgacggtgacgagtgtcacg 555 Query: 371 tgcttttaggtacttctgctcggcagtgacagattcca 408 ||||| | ||||||||||| ||| |||||||||| Sbjct: 554 agctttcaaatacttctgctcagcaacaacagattcca 517
>gb|AC161606.5| Mus musculus BAC clone RP23-232M18 from chromosome 14, complete sequence Length = 223037 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 aatatgacagaaaatattccct 173 |||||||||||||||||||||| Sbjct: 42516 aatatgacagaaaatattccct 42495
>emb|AL162471.3|CNS01RHU Human chromosome 14 DNA sequence Partial sequence from BAC R-882I14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 149326 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 148 ctacaatatgacagaaaatatt 169 |||||||||||||||||||||| Sbjct: 84902 ctacaatatgacagaaaatatt 84881
>emb|AL159140.4|CNS01RGP Human chromosome 14 DNA sequence BAC R-131E8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164452 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 ctacaatatgacagaaaatatt 169 |||||||||||||||||||||| Sbjct: 101807 ctacaatatgacagaaaatatt 101828
>gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, complete sequence Length = 210088 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 aatatgacagaaaatattccct 173 |||||||||||||||||||||| Sbjct: 180580 aatatgacagaaaatattccct 180559
>gb|AC122345.4| Mus musculus BAC clone RP23-366P9 from chromosome 6, complete sequence Length = 199923 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 cctgttggagccatctgctgc 191 ||||||||||||||||||||| Sbjct: 187553 cctgttggagccatctgctgc 187573
>gb|AC163109.5| Mus musculus 6 BAC RP23-172E18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199216 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 cctgttggagccatctgctgc 191 ||||||||||||||||||||| Sbjct: 12810 cctgttggagccatctgctgc 12830
>gb|AC019133.8| Homo sapiens BAC clone RP11-577G20 from 4, complete sequence Length = 185556 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 133 agagggggtgaaatgctacaatatgacagaaaa 165 |||||| |||||||||||| | ||||||||||| Sbjct: 105294 agagggagtgaaatgctaccagatgacagaaaa 105326
>gb|AY103657.1| Zea mays PCO102715 mRNA sequence Length = 859 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 ttggagccatctgctgctgccatgc 199 ||||||||| ||||||||||||||| Sbjct: 143 ttggagccagctgctgctgccatgc 119
>dbj|AP006429.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17D07, TM0322, complete sequence Length = 109570 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 486 atgtgcccaacatgaatgtagaaag 510 ||||| ||||||||||||||||||| Sbjct: 42585 atgtgaccaacatgaatgtagaaag 42609
>gb|AC113493.9| Mus musculus chromosome 15, clone RP23-359H23, complete sequence Length = 207687 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcagtgacagattccagtgcttcc 416 ||||||||| |||||||||||||| Sbjct: 7801 gcagtgacatattccagtgcttcc 7778
>gb|AC135000.2| Homo sapiens 3 BAC RP11-483E7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 70753 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 caattttcacattgataggg 446 |||||||||||||||||||| Sbjct: 41113 caattttcacattgataggg 41132
>gb|AC158922.8| Mus musculus chromosome 15, clone RP23-182C12, complete sequence Length = 201723 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 393 gcagtgacagattccagtgcttcc 416 ||||||||| |||||||||||||| Sbjct: 42516 gcagtgacatattccagtgcttcc 42539
>gb|AC157097.5| Mus musculus 6 BAC RP24-369M3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 206335 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tatgaagactctgaggatta 22 |||||||||||||||||||| Sbjct: 99283 tatgaagactctgaggatta 99264
>emb|BX322582.4| Mouse DNA sequence from clone RP23-332L16 on chromosome 4, complete sequence Length = 42660 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 agctgcatactccgccattgtgta 316 ||||||||||||| |||||||||| Sbjct: 34440 agctgcatactcctccattgtgta 34417 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,439,925 Number of Sequences: 3902068 Number of extensions: 4439925 Number of successful extensions: 95478 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95373 Number of HSP's gapped (non-prelim): 104 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
