ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SKS1_ARATH (Q8VXX5) Monocopper oxidase-like protein SKS1 precursor 42 0.001
2SKU5_ARATH (Q9SU40) Putative monocopper oxidase precursor (Skewe... 41 0.001
3ACON_RICPR (Q9ZCF4) Aconitate hydratase (EC 4.2.1.3) (Citrate hy... 32 0.79
4ACON_RICCN (Q92G90) Aconitate hydratase (EC 4.2.1.3) (Citrate hy... 30 2.3
5YGCO_ECOLI (Q46905) Ferredoxin-like protein ygcO 30 3.9
6ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7 29 5.1
7ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7 28 8.7

>SKS1_ARATH (Q8VXX5) Monocopper oxidase-like protein SKS1 precursor|
          Length = 589

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/39 (53%), Positives = 25/39 (64%)
 Frame = -2

Query: 458 YVRVVNPEDGADKTEMAVPRNALFCGQLHKYQKEQTPHH 342
           Y+R+ NPE+   KTEM  P N L+CG L   QKEQ  HH
Sbjct: 527 YMRITNPEEDG-KTEMDPPDNVLYCGALKNLQKEQ--HH 562



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>SKU5_ARATH (Q9SU40) Putative monocopper oxidase precursor (Skewed roots)|
          Length = 587

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 20/35 (57%), Positives = 24/35 (68%)
 Frame = -2

Query: 458 YVRVVNPEDGADKTEMAVPRNALFCGQLHKYQKEQ 354
           YVRVVNP++  +KTE   P N L+CG L K QK Q
Sbjct: 524 YVRVVNPDEN-NKTEFGHPDNVLYCGALSKLQKPQ 557



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>ACON_RICPR (Q9ZCF4) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)|
           (Aconitase)
          Length = 878

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 84  NKTWCVGNWNSPVGHLTNATNTSDPNLHTGSHLRIKK 194
           N+ + +GN +  +  +T+ TNTS+P++  G+ L  KK
Sbjct: 408 NQNYAIGNGDVVIAAITSCTNTSNPSVMIGAALLAKK 444



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>ACON_RICCN (Q92G90) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)|
           (Aconitase)
          Length = 878

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 84  NKTWCVGNWNSPVGHLTNATNTSDPNLHTGSHLRIKK 194
           N+ + +GN +  +  +T+ TNTS+P++  G+ L  KK
Sbjct: 408 NQNYEIGNGDVVIAAITSCTNTSNPSVMIGAALLAKK 444



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>YGCO_ECOLI (Q46905) Ferredoxin-like protein ygcO|
          Length = 98

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 127 CPTGLFQL-PTHHVLFCSRSIRRCGPCDLIC 38
           CP GLF L P  ++    RS   CG C L+C
Sbjct: 46  CPAGLFSLTPEGNLRIDYRSCLECGTCRLLC 76



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>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7|
          Length = 920

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 69  MLREQNKTWCVGNWNSPVGHLTNATNTSDPNLHTGS 176
           +L  +  T C+ +  +P GHL    N   P LHT +
Sbjct: 791 LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 826



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>ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7|
          Length = 920

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 69  MLREQNKTWCVGNWNSPVGHLTNATNTSDPNLHT 170
           +L     T C+    +P GHL  A N   P LHT
Sbjct: 791 LLTPDKSTPCLPGQMAPAGHLDPAHNPGPPGLHT 824


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,394,108
Number of Sequences: 219361
Number of extensions: 853076
Number of successful extensions: 2389
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2387
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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