Clone Name | rbart21a01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SKS1_ARATH (Q8VXX5) Monocopper oxidase-like protein SKS1 precursor | 42 | 0.001 | 2 | SKU5_ARATH (Q9SU40) Putative monocopper oxidase precursor (Skewe... | 41 | 0.001 | 3 | ACON_RICPR (Q9ZCF4) Aconitate hydratase (EC 4.2.1.3) (Citrate hy... | 32 | 0.79 | 4 | ACON_RICCN (Q92G90) Aconitate hydratase (EC 4.2.1.3) (Citrate hy... | 30 | 2.3 | 5 | YGCO_ECOLI (Q46905) Ferredoxin-like protein ygcO | 30 | 3.9 | 6 | ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7 | 29 | 5.1 | 7 | ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7 | 28 | 8.7 |
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>SKS1_ARATH (Q8VXX5) Monocopper oxidase-like protein SKS1 precursor| Length = 589 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/39 (53%), Positives = 25/39 (64%) Frame = -2 Query: 458 YVRVVNPEDGADKTEMAVPRNALFCGQLHKYQKEQTPHH 342 Y+R+ NPE+ KTEM P N L+CG L QKEQ HH Sbjct: 527 YMRITNPEEDG-KTEMDPPDNVLYCGALKNLQKEQ--HH 562
>SKU5_ARATH (Q9SU40) Putative monocopper oxidase precursor (Skewed roots)| Length = 587 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/35 (57%), Positives = 24/35 (68%) Frame = -2 Query: 458 YVRVVNPEDGADKTEMAVPRNALFCGQLHKYQKEQ 354 YVRVVNP++ +KTE P N L+CG L K QK Q Sbjct: 524 YVRVVNPDEN-NKTEFGHPDNVLYCGALSKLQKPQ 557
>ACON_RICPR (Q9ZCF4) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 878 Score = 32.0 bits (71), Expect = 0.79 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +3 Query: 84 NKTWCVGNWNSPVGHLTNATNTSDPNLHTGSHLRIKK 194 N+ + +GN + + +T+ TNTS+P++ G+ L KK Sbjct: 408 NQNYAIGNGDVVIAAITSCTNTSNPSVMIGAALLAKK 444
>ACON_RICCN (Q92G90) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 878 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +3 Query: 84 NKTWCVGNWNSPVGHLTNATNTSDPNLHTGSHLRIKK 194 N+ + +GN + + +T+ TNTS+P++ G+ L KK Sbjct: 408 NQNYEIGNGDVVIAAITSCTNTSNPSVMIGAALLAKK 444
>YGCO_ECOLI (Q46905) Ferredoxin-like protein ygcO| Length = 98 Score = 29.6 bits (65), Expect = 3.9 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = -3 Query: 127 CPTGLFQL-PTHHVLFCSRSIRRCGPCDLIC 38 CP GLF L P ++ RS CG C L+C Sbjct: 46 CPAGLFSLTPEGNLRIDYRSCLECGTCRLLC 76
>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7| Length = 920 Score = 29.3 bits (64), Expect = 5.1 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 69 MLREQNKTWCVGNWNSPVGHLTNATNTSDPNLHTGS 176 +L + T C+ + +P GHL N P LHT + Sbjct: 791 LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 826
>ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7| Length = 920 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +3 Query: 69 MLREQNKTWCVGNWNSPVGHLTNATNTSDPNLHT 170 +L T C+ +P GHL A N P LHT Sbjct: 791 LLTPDKSTPCLPGQMAPAGHLDPAHNPGPPGLHT 824 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,394,108 Number of Sequences: 219361 Number of extensions: 853076 Number of successful extensions: 2389 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2340 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2387 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)