Clone Information

BLAST Search Result

Clone Name	rbart20h12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY109726.1\| Zea mays CL8519_1 mRNA sequence	206	5e-50
2	dbj\|AK071057.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	196	5e-47
3	dbj\|AK058696.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	196	5e-47
4	ref\|XM_468644.1\| Oryza sativa (japonica cultivar-group), mRNA	163	7e-37
5	gb\|BT016272.1\| Zea mays clone Contig105 mRNA sequence	163	7e-37
6	gb\|AC092262.6\| Oryza sativa (japonica cultivar-group) chromosome...	72	2e-09
7	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	72	2e-09
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	72	2e-09
9	emb\|BX572628.6\| Zebrafish DNA sequence from clone CH211-223G7 in...	46	0.12
10	dbj\|AB168389.1\| Macaca fascicularis testis cDNA clone: QtsA-1176...	44	0.46
11	gb\|AC116713.8\| Mus musculus chromosome 9, clone RP23-118M23, com...	42	1.8
12	emb\|AL136116.11\| Human DNA sequence from clone RP1-95L4 on chrom...	42	1.8
13	gb\|DP000031.1\| Dasypus novemcinctus target 116 genomic scaffold	42	1.8
14	gb\|AC146896.15\| Mus musculus chromosome X clone xcat-28-97f16, c...	40	7.2
15	gb\|AE014852.2\| Plasmodium falciparum 3D7 chromosome 12, section ...	40	7.2
16	gb\|AC122060.3\| Mus musculus BAC clone RP24-468P4 from chromosome...	40	7.2
17	gb\|AC134879.3\| Homo sapiens BAC clone RP11-295P22 from Y, comple...	40	7.2
18	gb\|AC108870.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.2
19	emb\|CR628410.11\| Zebrafish DNA sequence from clone CH211-198D23 ...	40	7.2
20	gb\|AC124746.3\| Mus musculus BAC clone RP23-242B22 from 15, compl...	40	7.2
21	gb\|AC122833.2\| Mus musculus BAC clone RP23-181J12 from 15, compl...	40	7.2
22	gb\|AC093447.17\| Mus musculus strain 129/Sv clone ct7-25g12 map X...	40	7.2
23	gb\|AE014823.1\| Plasmodium falciparum 3D7 chromosome 14 section 8...	40	7.2
24	emb\|AL109653.14\|HSBG115M3 Human DNA sequence from clone GS1-115M...	40	7.2
25	emb\|AL035563.19\|HS1068E13 Human DNA sequence from clone RP5-1068...	40	7.2
26	emb\|AL929356.1\|PFA929356 Plasmodium falciparum strain 3D7, chrom...	40	7.2
27	emb\|CR559930.6\| Zebrafish DNA sequence from clone CH211-186E20 i...	40	7.2
28	gb\|AC026671.18\| Homo sapiens 3 BAC RP11-91M9 (Roswell Park Cance...	40	7.2
29	gb\|AC129008.1\| Genomic sequence for Oryza sativa, Nipponbare str...	40	7.2
30	gb\|AC125241.3\| Homo sapiens BAC clone RP11-524H18 from 4, comple...	40	7.2
31	gb\|AC010069.9\| Drosophila melanogaster 3L BAC RP98-17C18 (Roswel...	40	7.2
32	gb\|AC009374.7\| Drosophila melanogaster 3L BAC RP98-4J11 (Roswell...	40	7.2
33	gb\|AF282242.1\|AF282242 Plasmodium falciparum strain Dd2 chloroqu...	40	7.2
34	gb\|AF282241.1\|AF282241 Plasmodium falciparum strain K1 chloroqui...	40	7.2
35	gb\|AF169404.1\|AF169404 Plasmodium falciparum chloroquine resista...	40	7.2
36	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.2
37	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.2
38	dbj\|AP004463.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.2
39	dbj\|AK066047.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.2
40	emb\|CR925743.18\| Zebrafish DNA sequence from clone CH211-107N13 ...	40	7.2
41	emb\|CR847537.9\| Zebrafish DNA sequence from clone DKEYP-79B2 in ...	40	7.2
42	gb\|AE003524.5\| Drosophila melanogaster chromosome 3L, section 61...	40	7.2
43	emb\|AL844899.33\| Zebrafish DNA sequence from clone CH211-287K8 i...	40	7.2
44	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.2
45	emb\|AL732391.7\| Mouse DNA sequence from clone RP23-364H13 on chr...	40	7.2

>gb|AY109726.1| Zea mays CL8519_1 mRNA sequence
          Length = 1183

 Score =  206 bits (104), Expect = 5e-50
 Identities = 176/200 (88%)
 Strand = Plus / Plus

                                                                       
Query: 336 tccgaagtccatggcctcggaagaagacatgaagcgatccctctccgtccattgtctcac 395
           |||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||   |||
Sbjct: 513 tccgaaatccatggcctctgaagaagacatgaaccgatccctctctgtccactgctgcac 572

                                                                       
Query: 396 tatatcgattggttgtcccgtgaaagcagcaaacattttgtcaactttatctcgagcata 455
            || || | |||||| || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 573 catgtcaagtggttgcccggtgaaagcagcaaacattttatcaactttatcacgagcata 632

                                                                       
Query: 456 aattgtttccccaacctgtctcctcacctcctccgtattaccctctgatccaccttgagg 515
            || ||||| |||||||||| |||||||||||||  ||||||||| ||||||||||||||
Sbjct: 633 gatggtttctccaacctgtcgcctcacctcctccacattaccctcagatccaccttgagg 692

                               
Query: 516 ctgatgaatcattactctag 535
            |||||||||||||||||||
Sbjct: 693 ttgatgaatcattactctag 712

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>dbj|AK071057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078E16, full
           insert sequence
          Length = 1288

 Score =  196 bits (99), Expect = 5e-47
 Identities = 192/223 (86%)
 Strand = Plus / Minus

                                                                       
Query: 313 gtttccagcaatgcgtcgactagtccgaagtccatggcctcggaagaagacatgaagcga 372
           ||||||||||  || || |||||||| ||||||||||| || || ||||||||||| |||
Sbjct: 826 gtttccagcagggcatcaactagtccaaagtccatggcttcagatgaagacatgaaacga 767

                                                                       
Query: 373 tccctctccgtccattgtctcactatatcgattggttgtcccgtgaaagcagcaaacatt 432
           |||||||| ||||| |||   || ||||| |  | ||| || || |||||||||||||| 
Sbjct: 766 tccctctctgtccactgttgtaccatatccaaggtttgcccagtaaaagcagcaaacatc 707

                                                                       
Query: 433 ttgtcaactttatctcgagcataaattgtttccccaacctgtctcctcacctcctccgta 492
           || ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||  |
Sbjct: 706 ttatcaactttatcacgagcataaatggtttccccaacctgtcgcctcacctcctccaca 647

                                                      
Query: 493 ttaccctctgatccaccttgaggctgatgaatcattactctag 535
           |||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 646 ttaccctctgatacaccttgaggttgatgaatcattactctag 604

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>dbj|AK058696.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B09, full
           insert sequence
          Length = 1275

 Score =  196 bits (99), Expect = 5e-47
 Identities = 192/223 (86%)
 Strand = Plus / Minus

                                                                       
Query: 313 gtttccagcaatgcgtcgactagtccgaagtccatggcctcggaagaagacatgaagcga 372
           ||||||||||  || || |||||||| ||||||||||| || || ||||||||||| |||
Sbjct: 832 gtttccagcagggcatcaactagtccaaagtccatggcttcagatgaagacatgaaacga 773

                                                                       
Query: 373 tccctctccgtccattgtctcactatatcgattggttgtcccgtgaaagcagcaaacatt 432
           |||||||| ||||| |||   || ||||| |  | ||| || || |||||||||||||| 
Sbjct: 772 tccctctctgtccactgttgtaccatatccaaggtttgcccagtaaaagcagcaaacatc 713

                                                                       
Query: 433 ttgtcaactttatctcgagcataaattgtttccccaacctgtctcctcacctcctccgta 492
           || ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||  |
Sbjct: 712 ttatcaactttatcacgagcataaatggtttccccaacctgtcgcctcacctcctccaca 653

                                                      
Query: 493 ttaccctctgatccaccttgaggctgatgaatcattactctag 535
           |||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 652 ttaccctctgatacaccttgaggttgatgaatcattactctag 610

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>ref|XM_468644.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 768

 Score =  163 bits (82), Expect = 7e-37
 Identities = 109/118 (92%)
 Strand = Plus / Minus

                                                                       
Query: 418 aaagcagcaaacattttgtcaactttatctcgagcataaattgtttccccaacctgtctc 477
           |||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||| |
Sbjct: 698 aaagcagcaaacatcttatcaactttatcacgagcataaatggtttccccaacctgtcgc 639

                                                                     
Query: 478 ctcacctcctccgtattaccctctgatccaccttgaggctgatgaatcattactctag 535
           ||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 638 ctcacctcctccacattaccctctgatacaccttgaggttgatgaatcattactctag 581

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>gb|BT016272.1| Zea mays clone Contig105 mRNA sequence
          Length = 1436

 Score =  163 bits (82), Expect = 7e-37
 Identities = 175/202 (86%), Gaps = 3/202 (1%)
 Strand = Plus / Minus

                                                                       
Query: 336 tccgaagtccatggcctcggaagaagacatgaagcgatccctctccgtccattgtctcac 395
           |||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||   |||
Sbjct: 851 tccgaaatccatggcctctgaagaagacatgaaccgatccctctctgtccactgctgcac 792

                                                                       
Query: 396 tatatcgattggttgtcccgtgaaagcagcaaacattttgtcaactttatctcgagcata 455
            || || | |||||| || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 791 catgtcaagtggttgcccggtgaaagcagcaaacattttatcaactttatcacgagcata 732

                                                                       
Query: 456 aattgtttc-cccaacctgtctcctcacctcct-ccgtattaccctctgatccaccttga 513
            || ||||| || |||||||  ||||||||||| ||  ||||||||| ||||||||||||
Sbjct: 731 gatggtttctccaaacctgt-gcctcacctcctcccacattaccctcagatccaccttga 673

                                 
Query: 514 ggctgatgaatcattactctag 535
           || |||||||||||||||||||
Sbjct: 672 ggttgatgaatcattactctag 651

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>gb|AC092262.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C05
             map C12819S, complete sequence
          Length = 113266

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                 
Query: 448   cgagcataaattgtttccccaacctgtctcctcacctcctccgtattaccct 499
             ||||||||||| |||||||||||||||| |||||||||||||  ||||||||
Sbjct: 46992 cgagcataaatggtttccccaacctgtcgcctcacctcctccacattaccct 46941



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 497   cctctgatccaccttgaggctgatgaatcattactctag 535
             |||||||| |||||||||| |||||||||||||||||||
Sbjct: 46732 cctctgatacaccttgaggttgatgaatcattactctag 46694



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                         
Query: 358   gaagacatgaagcgatccctctccgtccattgtctcactatatcgattggttgtcccgtg 417
             ||||||||||| ||||||||||| ||||| |||   || ||||| |  | ||| || || 
Sbjct: 47217 gaagacatgaaacgatccctctctgtccactgttgtaccatatccaaggtttgcccagta 47158

                                       
Query: 418   aaagcagcaaacattttgtcaacttt 443
             |||||||||||||| || ||||||||
Sbjct: 47157 aaagcagcaaacatcttatcaacttt 47132



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 313   gtttccagcaatgcgtcgactagtccgaagtccatggcct 352
             ||||||||||  || || |||||||| |||||||||||||
Sbjct: 47360 gtttccagcagggcatcaactagtccaaagtccatggcct 47321

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                    
Query: 448      cgagcataaattgtttccccaacctgtctcctcacctcctccgtattaccct 499
                ||||||||||| |||||||||||||||| |||||||||||||  ||||||||
Sbjct: 16809142 cgagcataaatggtttccccaacctgtcgcctcacctcctccacattaccct 16809091



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 497      cctctgatccaccttgaggctgatgaatcattactctag 535
                |||||||| |||||||||| |||||||||||||||||||
Sbjct: 16808882 cctctgatacaccttgaggttgatgaatcattactctag 16808844



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                            
Query: 358      gaagacatgaagcgatccctctccgtccattgtctcactatatcgattggttgtcccgtg 417
                ||||||||||| ||||||||||| ||||| |||   || ||||| |  | ||| || || 
Sbjct: 16809367 gaagacatgaaacgatccctctctgtccactgttgtaccatatccaaggtttgcccagta 16809308

                                          
Query: 418      aaagcagcaaacattttgtcaacttt 443
                |||||||||||||| || ||||||||
Sbjct: 16809307 aaagcagcaaacatcttatcaacttt 16809282



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 313      gtttccagcaatgcgtcgactagtccgaagtccatggcct 352
                ||||||||||  || || |||||||| |||||||||||||
Sbjct: 16809510 gtttccagcagggcatcaactagtccaaagtccatggcct 16809471



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 2       gaaacggagaaagtagtact 21
               ||||||||||||||||||||
Sbjct: 7619282 gaaacggagaaagtagtact 7619263

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                    
Query: 448      cgagcataaattgtttccccaacctgtctcctcacctcctccgtattaccct 499
                ||||||||||| |||||||||||||||| |||||||||||||  ||||||||
Sbjct: 16802775 cgagcataaatggtttccccaacctgtcgcctcacctcctccacattaccct 16802724



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 497      cctctgatccaccttgaggctgatgaatcattactctag 535
                |||||||| |||||||||| |||||||||||||||||||
Sbjct: 16802515 cctctgatacaccttgaggttgatgaatcattactctag 16802477



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                            
Query: 358      gaagacatgaagcgatccctctccgtccattgtctcactatatcgattggttgtcccgtg 417
                ||||||||||| ||||||||||| ||||| |||   || ||||| |  | ||| || || 
Sbjct: 16803000 gaagacatgaaacgatccctctctgtccactgttgtaccatatccaaggtttgcccagta 16802941

                                          
Query: 418      aaagcagcaaacattttgtcaacttt 443
                |||||||||||||| || ||||||||
Sbjct: 16802940 aaagcagcaaacatcttatcaacttt 16802915



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 313      gtttccagcaatgcgtcgactagtccgaagtccatggcct 352
                ||||||||||  || || |||||||| |||||||||||||
Sbjct: 16803143 gtttccagcagggcatcaactagtccaaagtccatggcct 16803104



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 2       gaaacggagaaagtagtact 21
               ||||||||||||||||||||
Sbjct: 7617117 gaaacggagaaagtagtact 7617098

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>emb|BX572628.6| Zebrafish DNA sequence from clone CH211-223G7 in linkage group 4,
            complete sequence
          Length = 165454

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 40   atatgatatatttctagcattagctta 66
            ||||||||||| |||||||||||||||
Sbjct: 5954 atatgatatatatctagcattagctta 5928

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>dbj|AB168389.1| Macaca fascicularis testis cDNA clone: QtsA-11769, similar to human
           glycerol-3-phosphate dehydrogenase 2
           (mitochondrial)(GPD2), mRNA, RefSeq: NM_000408.1
          Length = 2266

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  agcattatcatcattgttatga 100
           ||||||||||||||||||||||
Sbjct: 650 agcattatcatcattgttatga 671

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>gb|AC116713.8| Mus musculus chromosome 9, clone RP23-118M23, complete sequence
          Length = 275731

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     attatcatcattgttatgatg 102
              |||||||||||||||||||||
Sbjct: 177626 attatcatcattgttatgatg 177606

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>emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chromosome 6 Contains the 3'
             end of the gene for androgen induced protein (AIG-1)
             (CGI-103) (includes FLJ10485), a pseudogene similar to
             actin genes, a ribosomal protein L31 (RPL31) pseudogene
             and a pseudogene similar to hypothetical proteins PRO2207
             and similar to presenilins associated rhomboid-like
             protein, complete sequence
          Length = 100815

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   gcatccccttgtcatcatccc 212
             |||||||||||||||||||||
Sbjct: 28190 gcatccccttgtcatcatccc 28210

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>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold
          Length = 288075

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 22     tataagtttcataattccatatgat 46
              |||||| ||||||||||||||||||
Sbjct: 175486 tataagattcataattccatatgat 175462

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>gb|AC146896.15| Mus musculus chromosome X clone xcat-28-97f16, complete sequence
          Length = 163375

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   aatgtatctgacttagagct 283
             ||||||||||||||||||||
Sbjct: 94655 aatgtatctgacttagagct 94636

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>gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete
             sequence
          Length = 260929

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    attatcatcattgttatgatgatt 105
             |||||||||||| |||||||||||
Sbjct: 49511 attatcatcattattatgatgatt 49488

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>gb|AC122060.3| Mus musculus BAC clone RP24-468P4 from chromosome 12, complete sequence
          Length = 170916

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ttacaatgagagattagcat 83
             ||||||||||||||||||||
Sbjct: 60105 ttacaatgagagattagcat 60086

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>gb|AC134879.3| Homo sapiens BAC clone RP11-295P22 from Y, complete sequence
          Length = 205515

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    attccatatgatatatttct 54
             ||||||||||||||||||||
Sbjct: 84770 attccatatgatatatttct 84789

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>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0682E05,
              complete sequence
          Length = 162223

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ccatatgatatatttctagc 57
              ||||||||||||||||||||
Sbjct: 147569 ccatatgatatatttctagc 147588

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>emb|CR628410.11| Zebrafish DNA sequence from clone CH211-198D23 in linkage group 23,
              complete sequence
          Length = 172610

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     gagattagcattatcatcat 92
              ||||||||||||||||||||
Sbjct: 154874 gagattagcattatcatcat 154855

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>gb|AC124746.3| Mus musculus BAC clone RP23-242B22 from 15, complete sequence
          Length = 183209

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     tgatatatttctagcattag 62
              ||||||||||||||||||||
Sbjct: 161755 tgatatatttctagcattag 161774

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>gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, complete sequence
          Length = 200339

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    tgatatatttctagcattag 62
             ||||||||||||||||||||
Sbjct: 18265 tgatatatttctagcattag 18284

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>gb|AC093447.17| Mus musculus strain 129/Sv clone ct7-25g12 map X, complete sequence
          Length = 188211

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    aatgtatctgacttagagct 283
              ||||||||||||||||||||
Sbjct: 119227 aatgtatctgacttagagct 119208

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>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete
              sequence
          Length = 249943

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     attatcatcattgttatgat 101
              ||||||||||||||||||||
Sbjct: 226999 attatcatcattgttatgat 227018

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>emb|AL109653.14|HSBG115M3 Human DNA sequence from clone GS1-115M3 on chromosome Xq27.1-28
             Contains gene KIAA1854 (containing FLJ38959) and a CpG
             island, complete sequence
          Length = 161341

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   gctcagcatcccgtttccag 320
             ||||||||||||||||||||
Sbjct: 13614 gctcagcatcccgtttccag 13595

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>emb|AL035563.19|HS1068E13 Human DNA sequence from clone RP5-1068E13 on chromosome 20p11.21-12.3
              Contains a eukaryotic translation elongation factor 1 alpha
              1 (EEF1A1) pseudogene, a novel gene, the C20orf78 gene for
              chromosome 20 open reading frame 78 and the C20orf79 gene
              for chromosome 20 open reading frame 79, complete sequence
          Length = 148177

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 100    atgatttacttacgaattacattaatga 127
              ||||||||||||| |||||| |||||||
Sbjct: 146127 atgatttacttaccaattaccttaatga 146100

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>emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5
          Length = 335050

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     attatcatcattgttatgatgatt 105
              |||||||||||| |||||||||||
Sbjct: 113635 attatcatcattattatgatgatt 113612

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>emb|CR559930.6| Zebrafish DNA sequence from clone CH211-186E20 in linkage group 5,
             complete sequence
          Length = 151158

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   aaagcagcaaacattttgtc 437
             ||||||||||||||||||||
Sbjct: 27966 aaagcagcaaacattttgtc 27985

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>gb|AC026671.18| Homo sapiens 3 BAC RP11-91M9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 141674

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   cctgtctcctcacctcctcc 489
             ||||||||||||||||||||
Sbjct: 39655 cctgtctcctcacctcctcc 39674

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>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     gaaacggagaaagtagtact 21
             ||||||||||||||||||||
Sbjct: 96008 gaaacggagaaagtagtact 96027

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>gb|AC125241.3| Homo sapiens BAC clone RP11-524H18 from 4, complete sequence
          Length = 39159

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   aaatggcatccccttgtcat 206
             ||||||||||||||||||||
Sbjct: 29725 aaatggcatccccttgtcat 29744

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>gb|AC010069.9| Drosophila melanogaster 3L BAC RP98-17C18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 166352

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   gaaagcagcaaacattttgt 436
             ||||||||||||||||||||
Sbjct: 18723 gaaagcagcaaacattttgt 18742

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>gb|AC009374.7| Drosophila melanogaster 3L BAC RP98-4J11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 164719

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    gaaagcagcaaacattttgt 436
              ||||||||||||||||||||
Sbjct: 161475 gaaagcagcaaacattttgt 161494

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>gb|AF282242.1|AF282242 Plasmodium falciparum strain Dd2 chloroquine resistance marker
            protein gene, complete cds
          Length = 10863

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   attatcatcattgttatgat 101
            ||||||||||||||||||||
Sbjct: 4593 attatcatcattgttatgat 4574

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>gb|AF282241.1|AF282241 Plasmodium falciparum strain K1 chloroquine resistance marker protein
            mRNA, complete cds
          Length = 10833

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   attatcatcattgttatgat 101
            ||||||||||||||||||||
Sbjct: 4599 attatcatcattgttatgat 4580

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>gb|AF169404.1|AF169404 Plasmodium falciparum chloroquine resistance marker protein gene,
            complete cds
          Length = 10919

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   attatcatcattgttatgat 101
            ||||||||||||||||||||
Sbjct: 4617 attatcatcattgttatgat 4598

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 38       ccatatgatatatttctagc 57
                ||||||||||||||||||||
Sbjct: 25657522 ccatatgatatatttctagc 25657541

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 2        gaaacggagaaagtagtacttata 25
                ||||||||| ||||||||||||||
Sbjct: 20427812 gaaacggaggaagtagtacttata 20427789

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>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0456B03
          Length = 152973

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     gaaacggagaaagtagtacttata 25
             ||||||||| ||||||||||||||
Sbjct: 58442 gaaacggaggaagtagtacttata 58419

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>dbj|AK066047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049C10, full
            insert sequence
          Length = 4344

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   ccatatgatatatttctagc 57
            ||||||||||||||||||||
Sbjct: 3534 ccatatgatatatttctagc 3515

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>emb|CR925743.18| Zebrafish DNA sequence from clone CH211-107N13 in linkage group 20,
              complete sequence
          Length = 161957

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 416    tgaaagcagcaaacattttgtcaa 439
              |||||||||||||| |||||||||
Sbjct: 107659 tgaaagcagcaaactttttgtcaa 107636

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>emb|CR847537.9| Zebrafish DNA sequence from clone DKEYP-79B2 in linkage group 3,
             complete sequence
          Length = 144825

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   acattttgtcaactttatct 447
             ||||||||||||||||||||
Sbjct: 27643 acattttgtcaactttatct 27662

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>gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete
              sequence
          Length = 425677

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    gaaagcagcaaacattttgt 436
              ||||||||||||||||||||
Sbjct: 107708 gaaagcagcaaacattttgt 107689

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>emb|AL844899.33| Zebrafish DNA sequence from clone CH211-287K8 in linkage group 5,
              complete sequence
          Length = 167857

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    aaagcagcaaacattttgtc 437
              ||||||||||||||||||||
Sbjct: 156994 aaagcagcaaacattttgtc 156975

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 38       ccatatgatatatttctagc 57
                ||||||||||||||||||||
Sbjct: 25976192 ccatatgatatatttctagc 25976211

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>emb|AL732391.7| Mouse DNA sequence from clone RP23-364H13 on chromosome X, complete
              sequence
          Length = 173841

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    aatgtatctgacttagagct 283
              ||||||||||||||||||||
Sbjct: 147197 aatgtatctgacttagagct 147178


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,928,413
Number of Sequences: 3902068
Number of extensions: 4928413
Number of successful extensions: 98779
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98431
Number of HSP's gapped (non-prelim): 345
length of query: 535
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 512
effective length of database: 17,143,297,704
effective search space: 8777368424448
effective search space used: 8777368424448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result