ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental r... 31 0.99
2AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental r... 31 0.99
3AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental r... 31 0.99
4KUP1_LACPL (Q88Z42) Probable potassium transport system protein ... 29 2.9
5ARMX1_MOUSE (Q9CX83) Armadillo repeat-containing X-linked protein 1 29 2.9
6ARMX1_RAT (Q5U310) Armadillo repeat-containing X-linked protein 1 29 2.9
7GP132_MOUSE (Q9Z282) Probable G-protein coupled receptor 132 (G2... 28 8.4
8ATP8_CHEMY (Q9XPI2) ATP synthase protein 8 (EC 3.6.3.14) (ATPase... 28 8.4

>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2|
           protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile
           X E mental retardation syndrome protein)
          Length = 1311

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 53  TWPEHTTCEAIISPKNSGNTHTPTHGNNKTTYHDP 157
           TWP+     +    K S   H P  G NK T H P
Sbjct: 644 TWPKPNITSSTPKEKESVELHDPPRGRNKATAHKP 678



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>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation|
           protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 53  TWPEHTTCEAIISPKNSGNTHTPTHGNNKTTYHDP 157
           TWP+     +    K S   H P  G NK T H P
Sbjct: 605 TWPKPNITSSTPKEKESVELHDPPRGRNKATAHKP 639



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>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation|
           protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 53  TWPEHTTCEAIISPKNSGNTHTPTHGNNKTTYHDP 157
           TWP+     +    K S   H P  G NK T H P
Sbjct: 605 TWPKPNITSSTPKEKESVELHDPPRGRNKATAHKP 639



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>KUP1_LACPL (Q88Z42) Probable potassium transport system protein kup 1|
          Length = 660

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 165 GHVGS*YVVLLFPWVGVCVFPEFFGE---IIASHVVCSGHV 52
           GHVG   + L +P+V VC+   +FG+   I+       GHV
Sbjct: 241 GHVGKTNIRLSWPYVKVCLLLSYFGQAAWILGPGQAIQGHV 281



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>ARMX1_MOUSE (Q9CX83) Armadillo repeat-containing X-linked protein 1|
          Length = 456

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 166 RPRGVVIRGLVISMGRCVCISRIFW 92
           R  G V  G+VI  G C C+ R+ W
Sbjct: 5   REAGCVAAGMVIGAGACYCVYRLTW 29



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>ARMX1_RAT (Q5U310) Armadillo repeat-containing X-linked protein 1|
          Length = 461

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 166 RPRGVVIRGLVISMGRCVCISRIFW 92
           R  G V  G+VI  G C C+ R+ W
Sbjct: 5   REAGCVAAGMVIGAGACYCVYRLTW 29



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>GP132_MOUSE (Q9Z282) Probable G-protein coupled receptor 132 (G2 accumulation|
           protein)
          Length = 382

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 56  WPEHTTCEAIISPKNSGNTHTPTHGNNKTTYHDPTWP 166
           W + +T   +   K+S  TH PT  +N  T+ +P  P
Sbjct: 324 WKKWSTKTYVTCSKDSEETHLPTELSNTYTFPNPAHP 360



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>ATP8_CHEMY (Q9XPI2) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
           (A6L)
          Length = 61

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 47  SGTWPEHTTCEAIISPKNSGN--THTPTHGNNKTTYHDPTWPVT 172
           S TW  +T    I+ PK   +  T+ PT+ NNK   +  TWP T
Sbjct: 14  SSTWLIYTI---ILQPKILSHLPTNNPTNKNNKINTNSWTWPWT 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,857,555
Number of Sequences: 219361
Number of extensions: 637545
Number of successful extensions: 1695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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