Clone Name | rbart20h08 |
---|---|
Clone Library Name | barley_pub |
>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2| protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile X E mental retardation syndrome protein) Length = 1311 Score = 30.8 bits (68), Expect = 0.99 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +2 Query: 53 TWPEHTTCEAIISPKNSGNTHTPTHGNNKTTYHDP 157 TWP+ + K S H P G NK T H P Sbjct: 644 TWPKPNITSSTPKEKESVELHDPPRGRNKATAHKP 678
>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 30.8 bits (68), Expect = 0.99 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +2 Query: 53 TWPEHTTCEAIISPKNSGNTHTPTHGNNKTTYHDP 157 TWP+ + K S H P G NK T H P Sbjct: 605 TWPKPNITSSTPKEKESVELHDPPRGRNKATAHKP 639
>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 30.8 bits (68), Expect = 0.99 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +2 Query: 53 TWPEHTTCEAIISPKNSGNTHTPTHGNNKTTYHDP 157 TWP+ + K S H P G NK T H P Sbjct: 605 TWPKPNITSSTPKEKESVELHDPPRGRNKATAHKP 639
>KUP1_LACPL (Q88Z42) Probable potassium transport system protein kup 1| Length = 660 Score = 29.3 bits (64), Expect = 2.9 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -3 Query: 165 GHVGS*YVVLLFPWVGVCVFPEFFGE---IIASHVVCSGHV 52 GHVG + L +P+V VC+ +FG+ I+ GHV Sbjct: 241 GHVGKTNIRLSWPYVKVCLLLSYFGQAAWILGPGQAIQGHV 281
>ARMX1_MOUSE (Q9CX83) Armadillo repeat-containing X-linked protein 1| Length = 456 Score = 29.3 bits (64), Expect = 2.9 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 Query: 166 RPRGVVIRGLVISMGRCVCISRIFW 92 R G V G+VI G C C+ R+ W Sbjct: 5 REAGCVAAGMVIGAGACYCVYRLTW 29
>ARMX1_RAT (Q5U310) Armadillo repeat-containing X-linked protein 1| Length = 461 Score = 29.3 bits (64), Expect = 2.9 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 Query: 166 RPRGVVIRGLVISMGRCVCISRIFW 92 R G V G+VI G C C+ R+ W Sbjct: 5 REAGCVAAGMVIGAGACYCVYRLTW 29
>GP132_MOUSE (Q9Z282) Probable G-protein coupled receptor 132 (G2 accumulation| protein) Length = 382 Score = 27.7 bits (60), Expect = 8.4 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +2 Query: 56 WPEHTTCEAIISPKNSGNTHTPTHGNNKTTYHDPTWP 166 W + +T + K+S TH PT +N T+ +P P Sbjct: 324 WKKWSTKTYVTCSKDSEETHLPTELSNTYTFPNPAHP 360
>ATP8_CHEMY (Q9XPI2) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)| (A6L) Length = 61 Score = 27.7 bits (60), Expect = 8.4 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 47 SGTWPEHTTCEAIISPKNSGN--THTPTHGNNKTTYHDPTWPVT 172 S TW +T I+ PK + T+ PT+ NNK + TWP T Sbjct: 14 SSTWLIYTI---ILQPKILSHLPTNNPTNKNNKINTNSWTWPWT 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,857,555 Number of Sequences: 219361 Number of extensions: 637545 Number of successful extensions: 1695 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1669 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1694 length of database: 80,573,946 effective HSP length: 51 effective length of database: 69,386,535 effective search space used: 1665276840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)