Clone Name | rbart20h07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | YADC_SCHPO (Q09837) Putative glycosyl transferase C4G8.12c in ch... | 30 | 2.0 | 2 | ITB8_HUMAN (P26012) Integrin beta-8 precursor | 30 | 3.5 |
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>YADC_SCHPO (Q09837) Putative glycosyl transferase C4G8.12c in chromosome I (EC| 2.-.-.-) Length = 533 Score = 30.4 bits (67), Expect = 2.0 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Frame = -1 Query: 228 FRLCGCICRMQCQPSTNM*LHALYPFMKHDRIYVLLLVSVNHASSMMYRIGPSKA----- 64 F LC CIC+ C P YP + R+Y+ L+ + S ++ I P A Sbjct: 75 FLLCRCICKSNCSP---------YPILLFTRLYMCLISLLIDLS--IWNIVPLNARWSAL 123 Query: 63 -MYKCSRLLISFVVH 22 +Y S + +F H Sbjct: 124 LLYSSSFMATTFQTH 138
>ITB8_HUMAN (P26012) Integrin beta-8 precursor| Length = 769 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 158 YRACSYIFVEGWHCMRQMHPQSLKQSI 238 Y AC E W+CM+ +HP +L Q+I Sbjct: 631 YTACK----ENWNCMQCLHPHNLSQAI 653 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,663,710 Number of Sequences: 219361 Number of extensions: 1022574 Number of successful extensions: 1768 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1736 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1768 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)