ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on ch... 46 0.045
2ref|XM_696138.1| PREDICTED: Danio rerio similar to zinc finger p... 42 0.69
3gb|AC098807.3| Papio anubis clone RP41-157N15, complete sequence 42 0.69
4gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, com... 40 2.7
5gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, co... 40 2.7
6emb|CT009719.10| Mouse DNA sequence from clone RP23-65P17 on chr... 40 2.7
7emb|CR377220.10| Zebrafish DNA sequence from clone DKEY-279E10 i... 40 2.7
8gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete s... 40 2.7
9emb|AL590543.8| Human DNA sequence from clone RP11-108N8 on chro... 40 2.7
10emb|AL356252.10| Human DNA sequence from clone RP11-468L10 on ch... 40 2.7
11dbj|AK125591.1| Homo sapiens cDNA FLJ43603 fis, clone SPLEN2005767 40 2.7
12dbj|AK092579.1| Homo sapiens cDNA FLJ35260 fis, clone PROST2004258 40 2.7
13gb|AC097358.2| Homo sapiens chromosome 3 clone RP11-157F20, comp... 40 2.7
14gb|AC092050.3| Homo sapiens chromosome 3 clone RP11-263I16, comp... 40 2.7
15emb|BX088714.18| Zebrafish DNA sequence from clone DKEY-16F19 in... 40 2.7
16ref|XM_392768.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 2.7
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
18dbj|AP005891.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
19dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7

>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete
             sequence
          Length = 198743

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 154   aacaaaaacaaaaacggaaccatgtaa 180
             |||||||||||||| ||||||||||||
Sbjct: 48467 aacaaaaacaaaaaaggaaccatgtaa 48493



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>ref|XM_696138.1| PREDICTED: Danio rerio similar to zinc finger protein 289, ID1
            regulated (LOC572425), partial mRNA
          Length = 1672

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 158  aaaacaaaaacggaaccatgt 178
            |||||||||||||||||||||
Sbjct: 1597 aaaacaaaaacggaaccatgt 1617



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>gb|AC098807.3| Papio anubis clone RP41-157N15, complete sequence
          Length = 212643

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 152    acaacaaaaacaaaaacggaa 172
              |||||||||||||||||||||
Sbjct: 102776 acaacaaaaacaaaaacggaa 102796



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>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence
          Length = 188649

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    ctaggacaacaaaaacaaaa 166
              ||||||||||||||||||||
Sbjct: 154114 ctaggacaacaaaaacaaaa 154133



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>gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, complete sequence
          Length = 186632

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   cactaggacaacaaaaacaa 164
             ||||||||||||||||||||
Sbjct: 73454 cactaggacaacaaaaacaa 73473



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>emb|CT009719.10| Mouse DNA sequence from clone RP23-65P17 on chromosome 17, complete
             sequence
          Length = 205369

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   acatggaaggtgaccaggca 201
             ||||||||||||||||||||
Sbjct: 56190 acatggaaggtgaccaggca 56171



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>emb|CR377220.10| Zebrafish DNA sequence from clone DKEY-279E10 in linkage group 1,
             complete sequence
          Length = 169012

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   aggacaacaaaaacaaaaac 168
             ||||||||||||||||||||
Sbjct: 67235 aggacaacaaaaacaaaaac 67254



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>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence
          Length = 108028

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aggacaacaaaaacaaaaac 168
             ||||||||||||||||||||
Sbjct: 73914 aggacaacaaaaacaaaaac 73895



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>emb|AL590543.8| Human DNA sequence from clone RP11-108N8 on chromosome 6 Contains the
             5' end of the gene for a novel protein (FLJ20627), the
             gene for a novel protein (FLJ12910), the 5' end of the
             gene for a novel protein (FLJ23305) and 3 CpG islands,
             complete sequence
          Length = 84216

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   caggcacataacaaccaaaa 215
             ||||||||||||||||||||
Sbjct: 58362 caggcacataacaaccaaaa 58381



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>emb|AL356252.10| Human DNA sequence from clone RP11-468L10 on chromosome 13, complete
              sequence
          Length = 143690

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 145    cactaggacaacaaaaacaaaaac 168
              |||||||| |||||||||||||||
Sbjct: 112195 cactaggaaaacaaaaacaaaaac 112172



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>dbj|AK125591.1| Homo sapiens cDNA FLJ43603 fis, clone SPLEN2005767
          Length = 2810

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  aatacatggaaggtgaccag 198
            ||||||||||||||||||||
Sbjct: 1123 aatacatggaaggtgaccag 1104



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>dbj|AK092579.1| Homo sapiens cDNA FLJ35260 fis, clone PROST2004258
          Length = 1893

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aatacatggaaggtgaccag 198
           ||||||||||||||||||||
Sbjct: 206 aatacatggaaggtgaccag 187



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>gb|AC097358.2| Homo sapiens chromosome 3 clone RP11-157F20, complete sequence
          Length = 154606

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   aatacatggaaggtgaccag 198
             ||||||||||||||||||||
Sbjct: 52530 aatacatggaaggtgaccag 52549



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>gb|AC092050.3| Homo sapiens chromosome 3 clone RP11-263I16, complete sequence
          Length = 171934

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   aatacatggaaggtgaccag 198
             ||||||||||||||||||||
Sbjct: 71297 aatacatggaaggtgaccag 71278



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>emb|BX088714.18| Zebrafish DNA sequence from clone DKEY-16F19 in linkage group 18,
              complete sequence
          Length = 167148

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    aaaaacaaaaacggaaccat 176
              ||||||||||||||||||||
Sbjct: 154940 aaaaacaaaaacggaaccat 154959



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>ref|XM_392768.2| PREDICTED: Apis mellifera similar to ENSANGP00000003580
           (LOC409245), mRNA
          Length = 1122

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aatacatggaaggtgaccag 198
           ||||||||||||||||||||
Sbjct: 317 aatacatggaaggtgaccag 298



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 84       aggtcatgcatatatataac 103
                ||||||||||||||||||||
Sbjct: 17278025 aggtcatgcatatatataac 17278044



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>dbj|AP005891.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1045B05
          Length = 140992

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    aggtcatgcatatatataac 103
             ||||||||||||||||||||
Sbjct: 64897 aggtcatgcatatatataac 64916



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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0054F02
          Length = 180651

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   aggtcatgcatatatataac 103
            ||||||||||||||||||||
Sbjct: 1938 aggtcatgcatatatataac 1957


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,379,104
Number of Sequences: 3902068
Number of extensions: 3379104
Number of successful extensions: 455095
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 454904
Number of HSP's gapped (non-prelim): 191
length of query: 216
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 194
effective length of database: 17,147,199,772
effective search space: 3326556755768
effective search space used: 3326556755768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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