Clone Name | rbart20h06 |
---|---|
Clone Library Name | barley_pub |
>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete sequence Length = 198743 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Plus Query: 154 aacaaaaacaaaaacggaaccatgtaa 180 |||||||||||||| |||||||||||| Sbjct: 48467 aacaaaaacaaaaaaggaaccatgtaa 48493
>ref|XM_696138.1| PREDICTED: Danio rerio similar to zinc finger protein 289, ID1 regulated (LOC572425), partial mRNA Length = 1672 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 aaaacaaaaacggaaccatgt 178 ||||||||||||||||||||| Sbjct: 1597 aaaacaaaaacggaaccatgt 1617
>gb|AC098807.3| Papio anubis clone RP41-157N15, complete sequence Length = 212643 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 acaacaaaaacaaaaacggaa 172 ||||||||||||||||||||| Sbjct: 102776 acaacaaaaacaaaaacggaa 102796
>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence Length = 188649 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ctaggacaacaaaaacaaaa 166 |||||||||||||||||||| Sbjct: 154114 ctaggacaacaaaaacaaaa 154133
>gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, complete sequence Length = 186632 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cactaggacaacaaaaacaa 164 |||||||||||||||||||| Sbjct: 73454 cactaggacaacaaaaacaa 73473
>emb|CT009719.10| Mouse DNA sequence from clone RP23-65P17 on chromosome 17, complete sequence Length = 205369 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 acatggaaggtgaccaggca 201 |||||||||||||||||||| Sbjct: 56190 acatggaaggtgaccaggca 56171
>emb|CR377220.10| Zebrafish DNA sequence from clone DKEY-279E10 in linkage group 1, complete sequence Length = 169012 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aggacaacaaaaacaaaaac 168 |||||||||||||||||||| Sbjct: 67235 aggacaacaaaaacaaaaac 67254
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aggacaacaaaaacaaaaac 168 |||||||||||||||||||| Sbjct: 73914 aggacaacaaaaacaaaaac 73895
>emb|AL590543.8| Human DNA sequence from clone RP11-108N8 on chromosome 6 Contains the 5' end of the gene for a novel protein (FLJ20627), the gene for a novel protein (FLJ12910), the 5' end of the gene for a novel protein (FLJ23305) and 3 CpG islands, complete sequence Length = 84216 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caggcacataacaaccaaaa 215 |||||||||||||||||||| Sbjct: 58362 caggcacataacaaccaaaa 58381
>emb|AL356252.10| Human DNA sequence from clone RP11-468L10 on chromosome 13, complete sequence Length = 143690 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 cactaggacaacaaaaacaaaaac 168 |||||||| ||||||||||||||| Sbjct: 112195 cactaggaaaacaaaaacaaaaac 112172
>dbj|AK125591.1| Homo sapiens cDNA FLJ43603 fis, clone SPLEN2005767 Length = 2810 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aatacatggaaggtgaccag 198 |||||||||||||||||||| Sbjct: 1123 aatacatggaaggtgaccag 1104
>dbj|AK092579.1| Homo sapiens cDNA FLJ35260 fis, clone PROST2004258 Length = 1893 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aatacatggaaggtgaccag 198 |||||||||||||||||||| Sbjct: 206 aatacatggaaggtgaccag 187
>gb|AC097358.2| Homo sapiens chromosome 3 clone RP11-157F20, complete sequence Length = 154606 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 aatacatggaaggtgaccag 198 |||||||||||||||||||| Sbjct: 52530 aatacatggaaggtgaccag 52549
>gb|AC092050.3| Homo sapiens chromosome 3 clone RP11-263I16, complete sequence Length = 171934 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aatacatggaaggtgaccag 198 |||||||||||||||||||| Sbjct: 71297 aatacatggaaggtgaccag 71278
>emb|BX088714.18| Zebrafish DNA sequence from clone DKEY-16F19 in linkage group 18, complete sequence Length = 167148 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 aaaaacaaaaacggaaccat 176 |||||||||||||||||||| Sbjct: 154940 aaaaacaaaaacggaaccat 154959
>ref|XM_392768.2| PREDICTED: Apis mellifera similar to ENSANGP00000003580 (LOC409245), mRNA Length = 1122 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aatacatggaaggtgaccag 198 |||||||||||||||||||| Sbjct: 317 aatacatggaaggtgaccag 298
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aggtcatgcatatatataac 103 |||||||||||||||||||| Sbjct: 17278025 aggtcatgcatatatataac 17278044
>dbj|AP005891.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1045B05 Length = 140992 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aggtcatgcatatatataac 103 |||||||||||||||||||| Sbjct: 64897 aggtcatgcatatatataac 64916
>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0054F02 Length = 180651 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aggtcatgcatatatataac 103 |||||||||||||||||||| Sbjct: 1938 aggtcatgcatatatataac 1957 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,379,104 Number of Sequences: 3902068 Number of extensions: 3379104 Number of successful extensions: 455095 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 454904 Number of HSP's gapped (non-prelim): 191 length of query: 216 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 194 effective length of database: 17,147,199,772 effective search space: 3326556755768 effective search space used: 3326556755768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)