ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RLA0_ORYSA (P41095) 60S acidic ribosomal protein P0 104 1e-22
2RLA0_MAIZE (O24573) 60S acidic ribosomal protein P0 103 2e-22
3RLA0_SOYBN (P50346) 60S acidic ribosomal protein P0 99 3e-21
4RLA0A_ARATH (O04204) 60S acidic ribosomal protein P0-A 89 3e-18
5RLA0B_ARATH (Q42112) 60S acidic ribosomal protein P0-B 86 4e-17
6RLA0C_ARATH (P57691) 60S acidic ribosomal protein P0-C 86 4e-17
7RLA0_LUPLU (P50345) 60S acidic ribosomal protein P0 80 2e-15
8RLA0_BRARE (Q9PV90) 60S acidic ribosomal protein P0 (L10E) 74 2e-13
9RLA0_CHICK (P47826) 60S acidic ribosomal protein P0 (L10E) 71 1e-12
10RLA0_RANSY (Q9DG68) 60S acidic ribosomal protein P0 (L10E) 70 2e-12
11RLA0_ICTPU (Q90YX1) 60S acidic ribosomal protein P0 (L10E) 69 5e-12
12RLA0_RAT (P19945) 60S acidic ribosomal protein P0 (L10E) 68 8e-12
13RLA0_HUMAN (P05388) 60S acidic ribosomal protein P0 (L10E) 67 1e-11
14RLA0_DROME (P19889) 60S acidic ribosomal protein P0 (DNA-(apurin... 67 2e-11
15RLA0_BOVIN (Q95140) 60S acidic ribosomal protein P0 (L10E) (Frag... 66 3e-11
16RLA0_MOUSE (P14869) 60S acidic ribosomal protein P0 (L10E) 66 4e-11
17RLA0_CERCA (Q9U3U0) 60S acidic ribosomal protein P0 (CcP0) 65 5e-11
18RLA0_CAEEL (Q93572) 60S acidic ribosomal protein P0 57 2e-08
19RLA0_SCHPO (O74864) 60S acidic ribosomal protein P0 57 2e-08
20RLA0_EIMTE (Q967Y7) 60S acidic ribosomal protein P0 54 2e-07
21RLA0_DICDI (P22685) 60S acidic ribosomal protein P0 51 1e-06
22RLA0_YEAST (P05317) 60S acidic ribosomal protein P0 (L10E) 51 1e-06
23RLA0_PLAF8 (Q94660) 60S acidic ribosomal protein P0 49 7e-06
24RLA0_NEUCR (Q96TJ5) 60S acidic ribosomal protein P0 48 1e-05
25RLA0_PODAN (Q9C3Z6) 60S acidic ribosomal protein P0 47 2e-05
26RLA0_TRYCR (P26796) 60S acidic ribosomal protein P0 36 0.035
27Y421_METJA (Q57864) Hypothetical protein MJ0421 29 5.5
28RLA0_LEICH (P39096) 60S acidic ribosomal protein P0 29 5.5
29RLA0_LEIIN (P39097) 60S acidic ribosomal protein P0 29 5.5
30AKA12_HUMAN (Q02952) A-kinase anchor protein 12 (A-kinase anchor... 29 5.5
31Y4254_ANAVT (Q44491) Hypothetical protein Ava_4254 28 9.4

>RLA0_ORYSA (P41095) 60S acidic ribosomal protein P0|
          Length = 318

 Score =  104 bits (259), Expect = 1e-22
 Identities = 53/89 (59%), Positives = 58/89 (65%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXX 253
           AISYPT+AAAPHMFLN YKNVLAVA+ET+YSY HADKIKEYLKDPSKFAV          
Sbjct: 230 AISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGA 289

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                             SDG++G SLFD
Sbjct: 290 AAPSAAKEEEKKEEPEEESDGDLGMSLFD 318



to top

>RLA0_MAIZE (O24573) 60S acidic ribosomal protein P0|
          Length = 318

 Score =  103 bits (257), Expect = 2e-22
 Identities = 55/90 (61%), Positives = 58/90 (64%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXX 253
           AISYPT+AA PHMF+N YKNVLAVA+ETDYSY HADKIKEYLKDPSKFAV          
Sbjct: 230 AISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKFAV-AAPVAAGDS 288

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFDD 163
                             SD EMGFSLFDD
Sbjct: 289 GASAAPKEEEKAAEPEEESDEEMGFSLFDD 318



to top

>RLA0_SOYBN (P50346) 60S acidic ribosomal protein P0|
          Length = 320

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 52/90 (57%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXX-XXXX 256
           AISYPT+AAAPHMF+NAYKNVLAVA+ETDYS+  ADK+KEYLKDPSKFAV          
Sbjct: 231 AISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAAS 290

Query: 255 XXXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                              SD +MGFSLFD
Sbjct: 291 GAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320



to top

>RLA0A_ARATH (O04204) 60S acidic ribosomal protein P0-A|
          Length = 317

 Score = 89.4 bits (220), Expect = 3e-18
 Identities = 47/88 (53%), Positives = 55/88 (62%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXX 253
           AISYPT+AAAPHMFLNAYKNVLAVAL T+YS+  A+ +KE+LKDP+KFAV          
Sbjct: 231 AISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAV--AVAAPVSG 288

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLF 169
                             SDG+MGF LF
Sbjct: 289 ESGGAVVAVAVEEEAAEESDGDMGFDLF 316



to top

>RLA0B_ARATH (Q42112) 60S acidic ribosomal protein P0-B|
          Length = 320

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 41/90 (45%), Positives = 52/90 (57%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXX 253
           A+SYPT+AAAPHMF+NAYKN LA+A+ T+Y++  A+K+KEYLKDPSKFAV          
Sbjct: 230 AVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSADA 289

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFDD 163
                              D    F LFD+
Sbjct: 290 GGGAPAAAKVEEKEESDEEDYGGDFGLFDE 319



to top

>RLA0C_ARATH (P57691) 60S acidic ribosomal protein P0-C|
          Length = 323

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 43/93 (46%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXX 253
           A+SYPT+AAAPHMF+NAYKN LA+A+ TDY++  A+K+KE+LKDPSKF V          
Sbjct: 230 AVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKFVVAAAAVSADAG 289

Query: 252 XXXXXXXXXXXXXXXXXXSDG---EMGFSLFDD 163
                             SD    E GF LFD+
Sbjct: 290 GGSAQAGAAAKVEEKKEESDEEDYEGGFGLFDE 322



to top

>RLA0_LUPLU (P50345) 60S acidic ribosomal protein P0|
          Length = 322

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 41/88 (46%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
 Frame = -2

Query: 420 PTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXX 241
           P  +AAPH+F+NAYKNVLAVA+ T+YS+  AD++KEYLKDPSKFA               
Sbjct: 235 PNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKFAAVAAAAAPAADSGAA 294

Query: 240 XXXXXXXXXXX--XXXSDGEMGFSLFDD 163
                           SD EMGF LFD+
Sbjct: 295 PAAAAKAEKEEEPAEESDDEMGFGLFDE 322



to top

>RLA0_BRARE (Q9PV90) 60S acidic ribosomal protein P0 (L10E)|
          Length = 319

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 36/88 (40%), Positives = 46/88 (52%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXX 250
           I YPT+A+ PH  +N YK VLAV +ETDY++  A+K+K YL DP+ FAV           
Sbjct: 232 IGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAFAVAAPVAAATEQK 291

Query: 249 XXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                            SD +MGF LFD
Sbjct: 292 SAAPAAKEEAPKEDSEESDEDMGFGLFD 319



to top

>RLA0_CHICK (P47826) 60S acidic ribosomal protein P0 (L10E)|
          Length = 316

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 35/88 (39%), Positives = 45/88 (51%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXX 250
           I YPT+A+ PH  +N YK VLAVA+ETDY++  A+K+K +L DPS F             
Sbjct: 229 IGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAP 288

Query: 249 XXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                            SD +MGF LFD
Sbjct: 289 AAAAAPAKEAPKEESEESDEDMGFGLFD 316



to top

>RLA0_RANSY (Q9DG68) 60S acidic ribosomal protein P0 (L10E)|
          Length = 315

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 37/88 (42%), Positives = 46/88 (52%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXX 250
           I YPT+A+ PH  +N YK VLA+A+ETDYS+  ADK+K +L DPS F V           
Sbjct: 229 IGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAFVV-AAPVAETAAA 287

Query: 249 XXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                            SD +MGF LFD
Sbjct: 288 PAASAAPAKEEKEESEESDDDMGFGLFD 315



to top

>RLA0_ICTPU (Q90YX1) 60S acidic ribosomal protein P0 (L10E)|
          Length = 317

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 30/49 (61%), Positives = 38/49 (77%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAV 283
           I YPT+A+ PH  +N YK VL VA+ETDYS+  ADK+K +L DPS+FAV
Sbjct: 229 IGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRFAV 277



to top

>RLA0_RAT (P19945) 60S acidic ribosomal protein P0 (L10E)|
          Length = 317

 Score = 68.2 bits (165), Expect = 8e-12
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXX-XXXXXXXX 253
           I YPT+A+ PH  +N YK VLA+++ETDY++  A+K+K +L DPS FA            
Sbjct: 229 IGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFAAAAPVAAATTAA 288

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                             SD +MGF LFD
Sbjct: 289 PAAAAAPAKVEAKEESEESDEDMGFGLFD 317



to top

>RLA0_HUMAN (P05388) 60S acidic ribosomal protein P0 (L10E)|
          Length = 317

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKF-AVXXXXXXXXXX 253
           I YPT+A+ PH  +N YK VLA+++ETDY++  A+K+K +L DPS F A           
Sbjct: 229 IGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAA 288

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                             SD +MGF LFD
Sbjct: 289 PAAAAAPAKVEAKEESEESDEDMGFGLFD 317



to top

>RLA0_DROME (P19889) 60S acidic ribosomal protein P0 (DNA-(apurinic or|
           apyrimidinic site) lyase) (EC 4.2.99.18)
           (Apurinic-apyrimidinic endonuclease)
          Length = 317

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXX-XX 256
           ++ YPT+A+APH   N +KN+LA+A  T+  +  A  IKEY+KDPSKFA           
Sbjct: 228 SVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAA 287

Query: 255 XXXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                               D +MGF LFD
Sbjct: 288 GGATEKKEEAKKPESESEEEDDDMGFGLFD 317



to top

>RLA0_BOVIN (Q95140) 60S acidic ribosomal protein P0 (L10E) (Fragment)|
          Length = 309

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKF--AVXXXXXXXXX 256
           I YPT+A+ PH  +N YK VLA+++ETDY++  A+K+K +L DPS F  A          
Sbjct: 220 IGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAAPAAA 279

Query: 255 XXXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                              SD +MGF LFD
Sbjct: 280 PAATTAAPAKVEAKEESEESDEDMGFGLFD 309



to top

>RLA0_MOUSE (P14869) 60S acidic ribosomal protein P0 (L10E)|
          Length = 317

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXX-XXXXXXXX 253
           I YPT+A+ PH  +N YK VLA+++ET+Y++   +K+K +L DPS FA            
Sbjct: 229 IGYPTVASVPHSIINGYKRVLALSVETEYTFPLTEKVKAFLADPSAFAAAAPAAAATTAA 288

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                             SD +MGF LFD
Sbjct: 289 PAAAAAPAKAEAKEESEESDEDMGFGLFD 317



to top

>RLA0_CERCA (Q9U3U0) 60S acidic ribosomal protein P0 (CcP0)|
          Length = 317

 Score = 65.5 bits (158), Expect = 5e-11
 Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKF-AVXXXXXXXXXX 253
           I YPT+A+APH   N +KN+LA+A  T+  +  A  IKE++KDPSKF A           
Sbjct: 229 IGYPTIASAPHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKFVAAAAASAPAAGA 288

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                              D +MGF LFD
Sbjct: 289 GAAAEKKEEAKKEESESEEDDDMGFGLFD 317



to top

>RLA0_CAEEL (Q93572) 60S acidic ribosomal protein P0|
          Length = 311

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 31/89 (34%), Positives = 42/89 (47%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXX 253
           A++YPT+A+  H   N  +N+L VA  TD S+  A+ IK ++ DPSKFA           
Sbjct: 227 AVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKFA----AAAPAAA 282

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                             SD +MGF LFD
Sbjct: 283 AAPAAAAPAAKKEEPKEESDDDMGFGLFD 311



to top

>RLA0_SCHPO (O74864) 60S acidic ribosomal protein P0|
          Length = 312

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 29/87 (33%), Positives = 44/87 (50%)
 Frame = -2

Query: 426 SYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXX 247
           +YPT+ +  H  +NAYKN++AV+L T+Y+++  ++ K +L DPS F V            
Sbjct: 228 NYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAFVV--AAAPAAAAGG 285

Query: 246 XXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                           SD +MGF LFD
Sbjct: 286 EAEAPAAEAAAEEEEESDEDMGFGLFD 312



to top

>RLA0_EIMTE (Q967Y7) 60S acidic ribosomal protein P0|
          Length = 314

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 27/89 (30%), Positives = 42/89 (47%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXX 253
           A+  P+ AAAPH  L A++N  A+ L+T + +    ++KE +++P+ FA           
Sbjct: 227 AVGLPSAAAAPHSILEAFRNCAALCLDTPFCFPQMQRLKEMVENPAAFA-AAAAPAAAAP 285

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                              DG+MGFSLFD
Sbjct: 286 AAAPAAAAKAPEPEEEEEEDGDMGFSLFD 314



to top

>RLA0_DICDI (P22685) 60S acidic ribosomal protein P0|
          Length = 305

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 20/38 (52%), Positives = 30/38 (78%)
 Frame = -2

Query: 429 ISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIK 316
           I YPT+A+ PH  +NA+KN+LA++ ET Y++D A+K K
Sbjct: 225 IGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFK 262



to top

>RLA0_YEAST (P05317) 60S acidic ribosomal protein P0 (L10E)|
          Length = 312

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXX 253
           AI YPT+ +  H  +N YK++LAVA+   Y Y   + + + +++P K+A           
Sbjct: 226 AIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKYA--AAAPAATSA 283

Query: 252 XXXXXXXXXXXXXXXXXXSDGEMGFSLFD 166
                             SD +MGF LFD
Sbjct: 284 ASGDAAPAEEAAAEEEEESDDDMGFGLFD 312



to top

>RLA0_PLAF8 (Q94660) 60S acidic ribosomal protein P0|
          Length = 316

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 22/84 (26%), Positives = 41/84 (48%)
 Frame = -2

Query: 417 TMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXX 238
           T A+ PH+F+ A+KN++A+ +++DY++     +K+++++P  FA                
Sbjct: 233 TEASYPHVFVEAFKNIVALIIDSDYTFPLMKILKKWVENPEAFAAVAAPASAAKADEPKK 292

Query: 237 XXXXXXXXXXXXXSDGEMGFSLFD 166
                         DG MGF +FD
Sbjct: 293 EEAKKVEEEEEEEEDGFMGFGMFD 316



to top

>RLA0_NEUCR (Q96TJ5) 60S acidic ribosomal protein P0|
          Length = 313

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 19/49 (38%), Positives = 35/49 (71%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFA 286
           A+++PT+ +  H  +NAYK VLAVA+ET+ S+   +++K+ + +P  +A
Sbjct: 226 ALNFPTLPSVIHSVVNAYKKVLAVAIETEISWPEIEELKDRIANPEAYA 274



to top

>RLA0_PODAN (Q9C3Z6) 60S acidic ribosomal protein P0|
          Length = 314

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 35/49 (71%)
 Frame = -2

Query: 432 AISYPTMAAAPHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFA 286
           A+++PT+ +  H  +N+YK VLAVA+ET+ S+   +++K+ + +P  +A
Sbjct: 226 ALNFPTLPSVIHSLVNSYKKVLAVAIETEISWPEIEELKDRIANPEAYA 274



to top

>RLA0_TRYCR (P26796) 60S acidic ribosomal protein P0|
          Length = 323

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 420 PTMAAAPHMFLNAYKNVLAVALETDYSYDHAD 325
           PT A  PHM ++A+K +L  ++ T+Y +D  D
Sbjct: 239 PTAATLPHMIMDAFKTLLGASVATEYEFDEFD 270



to top

>Y421_METJA (Q57864) Hypothetical protein MJ0421|
          Length = 360

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -2

Query: 378 KNVLAVALETDYSYDH----ADKIKEYLKDPSKFAV 283
           + VL V  ET+  +D     A+KIK+Y+K+   FAV
Sbjct: 58  ERVLKVYFETETDFDKIVNLAEKIKDYIKEDETFAV 93



to top

>RLA0_LEICH (P39096) 60S acidic ribosomal protein P0|
          Length = 322

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 420 PTMAAAPHMFLNAYKNVLAVALETDYSYD 334
           PT +    M ++A+KN+LAV++ T Y ++
Sbjct: 238 PTSSTIGPMLVDAFKNLLAVSVATSYEFE 266



to top

>RLA0_LEIIN (P39097) 60S acidic ribosomal protein P0|
          Length = 323

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 420 PTMAAAPHMFLNAYKNVLAVALETDYSYD 334
           PT +    M ++A+KN+LAV++ T Y ++
Sbjct: 239 PTSSTIGPMLVDAFKNLLAVSVATSYEFE 267



to top

>AKA12_HUMAN (Q02952) A-kinase anchor protein 12 (A-kinase anchor protein 250|
           kDa) (AKAP 250) (Myasthenia gravis autoantigen gravin)
          Length = 1781

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 327 QHGHTSSLSPKRPQEHSCMH*GTCAVQQ 410
           Q G +S+ SP+ P+E +C+  G   VQQ
Sbjct: 560 QKGESSASSPEEPEEITCLEKGLAEVQQ 587



to top

>Y4254_ANAVT (Q44491) Hypothetical protein Ava_4254|
          Length = 86

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 381 YKNVLAVALETDYSYDHADKIKEYLKDPSK 292
           Y+N+ A+A ET   Y H D++K  LK   K
Sbjct: 51  YQNLTALAAETYEIYRHLDELKSQLKSLEK 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,432,573
Number of Sequences: 219361
Number of extensions: 673636
Number of successful extensions: 1815
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top