>HERC2_HUMAN (O95714) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4834

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -3

Query: 277  YRQYVVDGLVVGVSIRACMHAVFICHGVRGRVDQLRACYV*LARLGRYSTCMDGSWNYRI 98
            Y  YV + + VG+ +R C     +C G  G+V       + L R G +   +   W  + 
Sbjct: 2563 YAVYVRENIQVGMMVRCCRAYEEVCEGDVGKV-------IKLDRDGLHDLNVQCDWQQKG 2615

Query: 97   GHGWMIRWIRV 65
            G  W +R+I V
Sbjct: 2616 GTYW-VRYIHV 2625

>HERC2_MOUSE (Q4U2R1) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4836

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -3

Query: 277  YRQYVVDGLVVGVSIRACMHAVFICHGVRGRVDQLRACYV*LARLGRYSTCMDGSWNYRI 98
            Y  YV + + VG+ +R C     +C G  G+V       + L R G +   +   W  + 
Sbjct: 2564 YAVYVRENVQVGMMVRCCRTYEEVCEGDVGKV-------IKLDRDGLHDLNVQCDWQQKG 2616

Query: 97   GHGWMIRWIRV 65
            G  W +R+I V
Sbjct: 2617 GTYW-VRYIHV 2626

>CDC42_SCHPO (Q01112) Cell division control protein 42 homolog (CDC42Sp)|
          Length = 192

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 248 D*SIHNVLAVQHRHPRTYSQFGALHGERRARQ-GDVRRADGQAL 376
           D S+   LA QH+HP T+ Q     GER AR+ G V+  +  AL
Sbjct: 122 DPSVQQKLARQHQHPLTHEQ-----GERLARELGAVKYVECSAL 160

>POLN_RRVT (P13888) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: Nonstructural protein 3 (nsP3); RNA-directed
           RNA polymerase nsP4 (EC 2.7.7.48) (Nonstructural protein
           4) (nsP4)] (Fragment)
          Length = 1148

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
 Frame = +2

Query: 14  KTGCYRYTTDHKSPLVIYTD--------PSYHPSMAYPIIP*PIHACRVATETS*LNVAS 169
           K G   Y T+    +  Y          PS   S+  P +   + AC    E +   VAS
Sbjct: 618 KDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEVA--VAACNAFLEANYPTVAS 675

Query: 170 TQLIDPATHSMAYEHGMHACTDRHTY 247
            Q+ D     +    G  +C DR T+
Sbjct: 676 YQITDEYDAYLDMVDGSESCLDRATF 701

>POLN_RRVN (P13887) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1
          Length = 2479

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +2

Query: 47   KSPLVIYTDPSYHPSMAYPIIP*PIHACRVATETS*LNVASTQLIDPATHSMAYEHGMHA 226
            K P  +Y+ PS   S+  P +   + AC    E +   VAS Q+ D     +    G  +
Sbjct: 1969 KYPRPVYS-PSVEDSLQSPEVA--VAACNAFLEANYPTVASYQITDEYDAYLDMVDGSES 2025

Query: 227  CTDRHTY 247
            C DR T+
Sbjct: 2026 CLDRATF 2032

>CU077_PANTR (Q68US2) Protein C21orf77 homolog|
          Length = 126

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
 Frame = -2

Query: 299 TYVGAGVVPPIRCGWISRRC--------VDPCMHACRVHMPWSAW 189
           TY+G    P     W+S RC        +     AC  H PW+AW
Sbjct: 66  TYLGKETEP---IWWLSLRCGRASGVALMHSTAQACGHHSPWAAW 107

>VG10_BPML5 (Q05285) Gene 10 protein (Gp10)|
          Length = 292

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +2

Query: 173 QLIDPATHSMAYEHGMHACTDRHTY---D*SIHNVLAVQHRHPRTYSQFGALH---GERR 334
           +L DP    M  E  +HAC    T    D +     A+   H + +S  G LH    ERR
Sbjct: 179 ELADPVLGKMIRE--IHACLFNQTASTSDLATPGEGAIWQLHQKIHSIDGMLHPIHAERR 236

Query: 335 ARQGDV 352
           AR GD+
Sbjct: 237 ARAGDL 242

>CAPP_NOCFA (Q5YYG7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 923

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 374 GPDRRLDAHHPAELGVRRAVRQIVSTYVGAGVVP 273
           GP  RL      E+G+ RA +Q+V T+ G   VP
Sbjct: 464 GPHARLSEQAAKEVGIVRAAKQVVDTF-GPEAVP 496

>NODB_RHIGA (P50354) Chitooligosaccharide deacetylase (EC 3.5.1.-) (Nodulation|
           protein B)
          Length = 214

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +1

Query: 76  IVSSIHGLSDNSMTHPCMSSSDRDELIKRSKHAADR 183
           IVS  HG+++++MTHP +++  R + ++R    A+R
Sbjct: 67  IVSEGHGVANHTMTHPDLATCSRPQ-VEREIDEANR 101

>SSDH_MOUSE (Q8BWF0) Succinate semialdehyde dehydrogenase, mitochondrial|
           precursor (EC 1.2.1.24) (NAD(+)-dependent succinic
           semialdehyde dehydrogenase)
          Length = 523

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
 Frame = +3

Query: 195 TPWHMNTACMHARI----------------DTPTTNPSTTYWRYNTGTHVRTHNLAHCTA 326
           TPW+  +A +  ++                DTP +  +        G     +N+  C+ 
Sbjct: 190 TPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPYSALALAQLANQAGIPAGVYNVIPCSR 249

Query: 327 NA--ELGRVMCVEPTVRPLRF 383
           N   E+G V+C +P V  + F
Sbjct: 250 NKAKEVGEVLCTDPLVSKISF 270

>DNAE2_PSEAE (Q9I5Q2) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1031

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = -2

Query: 278 VPPIRCGWI-----SRRCVDPCMHACRVHMPWS 195
           +PP+ CG +      RR +  CM A R H+P S
Sbjct: 179 LPPVACGDVHMHARGRRALQDCMTAIRNHLPVS 211

>ZMY11_MOUSE (Q8R5C8) Zinc finger MYND domain-containing protein 11|
          Length = 562

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 89  SMAYPIIP*PIHACRVATETS*LNVASTQLIDPATHSMAYEHGMHACTDRHT 244
           S   P +P PI    V+T+T  L+ +S +++  +T + +       C D++T
Sbjct: 381 SQEIPTMPQPIERVSVSTQTKKLSASSPRMLHRSTQTTSDGVCQSMCHDKYT 432

>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein|
           5.8) (Ultrahigh sulfur keratin-associated protein 5.8)
           (Keratin, ultra high-sulfur matrix protein B) (UHS
           keratin B) (UHS KerB)
          Length = 187

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/58 (27%), Positives = 22/58 (37%)
 Frame = -1

Query: 345 PCRARRSPCSAPNCEYVRGCRCCTANTLWMD*S*VCRSVHACMPCSYAMECVAGSISC 172
           PC ++ S C   +C    G  CC ++         C     C PC  +  C  GS  C
Sbjct: 112 PCCSQSSCCKPCSCSSGCGSSCCQSSCC----KPCCSQSSCCKPCCCSSGC--GSSCC 163

>ACOX_DEBHA (Q6BRD5) Acyl-coenzyme A oxidase (EC 1.3.3.6) (Acyl-CoA oxidase)|
          Length = 706

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 329 VRRAVRQIVSTYVGAGVVPPIRCGWISRRCVDPCMHACRVHMPWSAWPG 183
           + +++  + S +V +G +    C W++   +D C  AC  H  +SA+ G
Sbjct: 394 IMKSIDSMKSLFVDSGSLKST-CTWLAAEVIDQCRQACGGH-GYSAYSG 440


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,743,680
Number of Sequences: 219361
Number of extensions: 1284214
Number of successful extensions: 3995
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3994
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)