Clone Name | rbart20g06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_462658.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1335 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 321 acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380 |||||||||||||||||||| ||| |||| ||||||| |||||||| | | |||||||| Sbjct: 926 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 867
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 321 acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380 |||||||||||||||||||| ||| |||| ||||||| |||||||| | | |||||||| Sbjct: 22323764 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 22323705
>dbj|AK120786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010M08, full insert sequence Length = 1770 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 321 acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380 |||||||||||||||||||| ||| |||| ||||||| |||||||| | | |||||||| Sbjct: 1158 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 1099
>dbj|AK109494.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A01, full insert sequence Length = 1610 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 321 acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380 |||||||||||||||||||| ||| |||| ||||||| |||||||| | | |||||||| Sbjct: 980 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 921
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 321 acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380 |||||||||||||||||||| ||| |||| ||||||| |||||||| | | |||||||| Sbjct: 74668 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 74609
>emb|AL845366.6| Zebrafish DNA sequence from clone CH211-167C22 in linkage group 20, complete sequence Length = 149189 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 catgcatgcacggatcgacaca 242 |||||||||||||||||||||| Sbjct: 117934 catgcatgcacggatcgacaca 117955
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 ctgatcgacccggccacgcac 196 ||||||||||||||||||||| Sbjct: 565063 ctgatcgacccggccacgcac 565083
>emb|AL112175.1|CNS019W7 Botrytis cinerea strain T4 cDNA library Length = 780 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 cggatccatcgtatcatccat 89 ||||||||||||||||||||| Sbjct: 755 cggatccatcgtatcatccat 735
>ref|NM_123132.1| Arabidopsis thaliana unknown protein AT5G37730 mRNA, complete cds Length = 690 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tccatccatggcctatccga 104 |||||||||||||||||||| Sbjct: 397 tccatccatggcctatccga 378
>ref|XM_420390.1| PREDICTED: Gallus gallus similar to Kelch-like 2, Mayven (LOC422422), mRNA Length = 3493 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 catgcatgcatgcacggatc 236 |||||||||||||||||||| Sbjct: 1140 catgcatgcatgcacggatc 1159
>gb|DQ447008.1| Arabidopsis thaliana clone pENTR221-At5g37730 unknown (At5g37730) mRNA, complete cds Length = 549 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tccatccatggcctatccga 104 |||||||||||||||||||| Sbjct: 364 tccatccatggcctatccga 345
>emb|CR386718.1| Gallus gallus finished cDNA, clone ChEST70b22 Length = 2864 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 catgcatgcatgcacggatc 236 |||||||||||||||||||| Sbjct: 510 catgcatgcatgcacggatc 529
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 16660649 gcatgcatgcatgcacggat 16660630
>gb|AY085404.1| Arabidopsis thaliana clone 150222 mRNA, complete sequence Length = 690 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tccatccatggcctatccga 104 |||||||||||||||||||| Sbjct: 397 tccatccatggcctatccga 378
>dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16 Length = 162527 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 37704 gcatgcatgcatgcacggat 37685
>dbj|AP004884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519B12 Length = 147542 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 102616 gcatgcatgcatgcacggat 102597
>dbj|AB018107.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K12B20 Length = 78874 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tccatccatggcctatccga 104 |||||||||||||||||||| Sbjct: 67029 tccatccatggcctatccga 67048
>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete sequence Length = 243969 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 catgcatgcatgcacggatc 236 |||||||||||||||||||| Sbjct: 77461 catgcatgcatgcacggatc 77480
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 acacggcatgcatgcatgca 230 |||||||||||||||||||| Sbjct: 3080714 acacggcatgcatgcatgca 3080733
>gb|DQ147111.1| Zea mays subsp. parviglumis isolate p15 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 184 gcatgcatgcatgcacggat 165
>gb|DQ147105.1| Zea mays subsp. parviglumis isolate p9 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 184 gcatgcatgcatgcacggat 165
>gb|DQ147104.1| Zea mays subsp. parviglumis isolate p8 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 184 gcatgcatgcatgcacggat 165
>gb|DQ147103.1| Zea mays subsp. parviglumis isolate p6 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 184 gcatgcatgcatgcacggat 165
>gb|DQ147102.1| Zea mays subsp. parviglumis isolate p5 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 184 gcatgcatgcatgcacggat 165
>gb|DQ147101.1| Zea mays subsp. parviglumis isolate p4 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 184 gcatgcatgcatgcacggat 165
>gb|DQ147098.1| Zea mays subsp. parviglumis isolate p1 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatgcatgcatgcacggat 235 |||||||||||||||||||| Sbjct: 184 gcatgcatgcatgcacggat 165 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,104,624 Number of Sequences: 3902068 Number of extensions: 2104624 Number of successful extensions: 47951 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47777 Number of HSP's gapped (non-prelim): 174 length of query: 384 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 362 effective length of database: 17,147,199,772 effective search space: 6207286317464 effective search space used: 6207286317464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)