ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_462658.1| Oryza sativa (japonica cultivar-group), predic... 56 9e-05
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
3dbj|AK120786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
4dbj|AK109494.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
5emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 56 9e-05
6emb|AL845366.6| Zebrafish DNA sequence from clone CH211-167C22 i... 44 0.33
7gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 1.3
8emb|AL112175.1|CNS019W7 Botrytis cinerea strain T4 cDNA library 42 1.3
9ref|NM_123132.1| Arabidopsis thaliana unknown protein AT5G37730 ... 40 5.1
10ref|XM_420390.1| PREDICTED: Gallus gallus similar to Kelch-like ... 40 5.1
11gb|DQ447008.1| Arabidopsis thaliana clone pENTR221-At5g37730 unk... 40 5.1
12emb|CR386718.1| Gallus gallus finished cDNA, clone ChEST70b22 40 5.1
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
14gb|AY085404.1| Arabidopsis thaliana clone 150222 mRNA, complete ... 40 5.1
15dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
16dbj|AP004884.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
17dbj|AB018107.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.1
18gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosom... 40 5.1
19emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 5.1
20gb|DQ147111.1| Zea mays subsp. parviglumis isolate p15 pathogene... 40 5.1
21gb|DQ147105.1| Zea mays subsp. parviglumis isolate p9 pathogenes... 40 5.1
22gb|DQ147104.1| Zea mays subsp. parviglumis isolate p8 pathogenes... 40 5.1
23gb|DQ147103.1| Zea mays subsp. parviglumis isolate p6 pathogenes... 40 5.1
24gb|DQ147102.1| Zea mays subsp. parviglumis isolate p5 pathogenes... 40 5.1
25gb|DQ147101.1| Zea mays subsp. parviglumis isolate p4 pathogenes... 40 5.1
26gb|DQ147098.1| Zea mays subsp. parviglumis isolate p1 pathogenes... 40 5.1

>ref|XM_462658.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1335

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 321 acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380
           |||||||||||||||||||| ||| ||||  ||||||| |||||||| | | ||||||||
Sbjct: 926 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 867



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                            
Query: 321      acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380
                |||||||||||||||||||| ||| ||||  ||||||| |||||||| | | ||||||||
Sbjct: 22323764 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 22323705



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>dbj|AK120786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010M08, full
            insert sequence
          Length = 1770

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 321  acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380
            |||||||||||||||||||| ||| ||||  ||||||| |||||||| | | ||||||||
Sbjct: 1158 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 1099



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>dbj|AK109494.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A01, full
           insert sequence
          Length = 1610

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 321 acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380
           |||||||||||||||||||| ||| ||||  ||||||| |||||||| | | ||||||||
Sbjct: 980 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 921



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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 321   acggcgaacgccgagctcggcagggtgatgtgcgtcgagccgacggtcaggcccttgagg 380
             |||||||||||||||||||| ||| ||||  ||||||| |||||||| | | ||||||||
Sbjct: 74668 acggcgaacgccgagctcgggaggctgatccgcgtcgacccgacggtgatggccttgagg 74609



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>emb|AL845366.6| Zebrafish DNA sequence from clone CH211-167C22 in linkage group 20,
              complete sequence
          Length = 149189

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 221    catgcatgcacggatcgacaca 242
              ||||||||||||||||||||||
Sbjct: 117934 catgcatgcacggatcgacaca 117955



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 176    ctgatcgacccggccacgcac 196
              |||||||||||||||||||||
Sbjct: 565063 ctgatcgacccggccacgcac 565083



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>emb|AL112175.1|CNS019W7 Botrytis cinerea strain T4 cDNA library
          Length = 780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  cggatccatcgtatcatccat 89
           |||||||||||||||||||||
Sbjct: 755 cggatccatcgtatcatccat 735



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>ref|NM_123132.1| Arabidopsis thaliana unknown protein AT5G37730 mRNA, complete cds
          Length = 690

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  tccatccatggcctatccga 104
           ||||||||||||||||||||
Sbjct: 397 tccatccatggcctatccga 378



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>ref|XM_420390.1| PREDICTED: Gallus gallus similar to Kelch-like 2, Mayven (LOC422422),
            mRNA
          Length = 3493

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  catgcatgcatgcacggatc 236
            ||||||||||||||||||||
Sbjct: 1140 catgcatgcatgcacggatc 1159



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>gb|DQ447008.1| Arabidopsis thaliana clone pENTR221-At5g37730 unknown (At5g37730)
           mRNA, complete cds
          Length = 549

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  tccatccatggcctatccga 104
           ||||||||||||||||||||
Sbjct: 364 tccatccatggcctatccga 345



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>emb|CR386718.1| Gallus gallus finished cDNA, clone ChEST70b22
          Length = 2864

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 217 catgcatgcatgcacggatc 236
           ||||||||||||||||||||
Sbjct: 510 catgcatgcatgcacggatc 529



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      gcatgcatgcatgcacggat 235
                ||||||||||||||||||||
Sbjct: 16660649 gcatgcatgcatgcacggat 16660630



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>gb|AY085404.1| Arabidopsis thaliana clone 150222 mRNA, complete sequence
          Length = 690

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  tccatccatggcctatccga 104
           ||||||||||||||||||||
Sbjct: 397 tccatccatggcctatccga 378



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>dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0091C16
          Length = 162527

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   gcatgcatgcatgcacggat 235
             ||||||||||||||||||||
Sbjct: 37704 gcatgcatgcatgcacggat 37685



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>dbj|AP004884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0519B12
          Length = 147542

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    gcatgcatgcatgcacggat 235
              ||||||||||||||||||||
Sbjct: 102616 gcatgcatgcatgcacggat 102597



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>dbj|AB018107.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K12B20
          Length = 78874

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    tccatccatggcctatccga 104
             ||||||||||||||||||||
Sbjct: 67029 tccatccatggcctatccga 67048



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>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete
             sequence
          Length = 243969

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   catgcatgcatgcacggatc 236
             ||||||||||||||||||||
Sbjct: 77461 catgcatgcatgcacggatc 77480



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 211     acacggcatgcatgcatgca 230
               ||||||||||||||||||||
Sbjct: 3080714 acacggcatgcatgcatgca 3080733



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>gb|DQ147111.1| Zea mays subsp. parviglumis isolate p15 pathogenesis-related
           protein 6 (pr6) gene, complete cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 gcatgcatgcatgcacggat 235
           ||||||||||||||||||||
Sbjct: 184 gcatgcatgcatgcacggat 165



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>gb|DQ147105.1| Zea mays subsp. parviglumis isolate p9 pathogenesis-related protein
           6 (pr6) gene, complete cds
          Length = 1185

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 gcatgcatgcatgcacggat 235
           ||||||||||||||||||||
Sbjct: 184 gcatgcatgcatgcacggat 165



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>gb|DQ147104.1| Zea mays subsp. parviglumis isolate p8 pathogenesis-related protein
           6 (pr6) gene, complete cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 gcatgcatgcatgcacggat 235
           ||||||||||||||||||||
Sbjct: 184 gcatgcatgcatgcacggat 165



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>gb|DQ147103.1| Zea mays subsp. parviglumis isolate p6 pathogenesis-related protein
           6 (pr6) gene, complete cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 gcatgcatgcatgcacggat 235
           ||||||||||||||||||||
Sbjct: 184 gcatgcatgcatgcacggat 165



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>gb|DQ147102.1| Zea mays subsp. parviglumis isolate p5 pathogenesis-related protein
           6 (pr6) gene, complete cds
          Length = 1185

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 gcatgcatgcatgcacggat 235
           ||||||||||||||||||||
Sbjct: 184 gcatgcatgcatgcacggat 165



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>gb|DQ147101.1| Zea mays subsp. parviglumis isolate p4 pathogenesis-related protein
           6 (pr6) gene, complete cds
          Length = 1185

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 gcatgcatgcatgcacggat 235
           ||||||||||||||||||||
Sbjct: 184 gcatgcatgcatgcacggat 165



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>gb|DQ147098.1| Zea mays subsp. parviglumis isolate p1 pathogenesis-related protein
           6 (pr6) gene, complete cds
          Length = 1185

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 gcatgcatgcatgcacggat 235
           ||||||||||||||||||||
Sbjct: 184 gcatgcatgcatgcacggat 165


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,104,624
Number of Sequences: 3902068
Number of extensions: 2104624
Number of successful extensions: 47951
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47777
Number of HSP's gapped (non-prelim): 174
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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