ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 46 0.075
2gb|AC091655.15| Trypanosoma brucei chromosome 5 clone RPCI93-3C6... 46 0.075
3emb|AL121933.15|HSA549D23 Human DNA sequence from clone RP11-549... 44 0.29
4emb|AJ972473.1| Medicago truncatula partial NSP1 gene for Nodula... 42 1.2
5emb|CR394541.16| Zebrafish DNA sequence from clone DKEY-51M5 in ... 42 1.2
6gb|AC130542.4| Mus musculus chromosome 6 clone RP24-167F4, compl... 40 4.6
7gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC... 40 4.6
8emb|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephal... 40 4.6
9emb|BX322662.12| Zebrafish DNA sequence from clone CH211-222C18 ... 40 4.6
10gb|AC096564.3| Homo sapiens BAC clone RP11-286E11 from 4, comple... 40 4.6
11gb|AC007754.4|AC007754 Drosophila melanogaster, chromosome 3R, r... 40 4.6
12gb|AC009211.5|AC009211 Drosophila melanogaster, chromosome 3R, r... 40 4.6
13emb|AL928887.13| Zebrafish DNA sequence from clone CH211-136O14 ... 40 4.6
14gb|AE003699.3| Drosophila melanogaster chromosome 3R, section 37... 40 4.6
15emb|AL807829.21| Zebrafish DNA sequence from clone CH211-246M4 i... 40 4.6
16gb|AC140110.2| Mus musculus BAC clone RP23-29H6 from 6, complete... 40 4.6
17gb|AC163446.2| Mus musculus chromosome 5, clone RP23-151G22, com... 40 4.6 
>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 77     gtaaacaaaggaagcaacaaaaa 99
              |||||||||||||||||||||||
Sbjct: 783648 gtaaacaaaggaagcaacaaaaa 783626
to top
>gb|AC091655.15| Trypanosoma brucei chromosome 5 clone RPCI93-3C6, complete sequence
          Length = 158247

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 77     gtaaacaaaggaagcaacaaaaa 99
              |||||||||||||||||||||||
Sbjct: 113254 gtaaacaaaggaagcaacaaaaa 113232
to top
>emb|AL121933.15|HSA549D23 Human DNA sequence from clone RP11-549D23 on chromosome 6, complete
              sequence
          Length = 185467

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 154    gaagacaagattctatacctag 175
              ||||||||||||||||||||||
Sbjct: 113123 gaagacaagattctatacctag 113102
to top
>emb|AJ972473.1| Medicago truncatula partial NSP1 gene for Nodulation Signaling
            Pathway 1 protein
          Length = 63146

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   gtatccaaatcacttgtatac 57
            |||||||||||||||||||||
Sbjct: 3725 gtatccaaatcacttgtatac 3705
to top
>emb|CR394541.16| Zebrafish DNA sequence from clone DKEY-51M5 in linkage group 22,
             complete sequence
          Length = 64881

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 78    taaacaaaggaagcaacaaaa 98
             |||||||||||||||||||||
Sbjct: 14267 taaacaaaggaagcaacaaaa 14287
to top
>gb|AC130542.4| Mus musculus chromosome 6 clone RP24-167F4, complete sequence
          Length = 192106

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    caggatatttgttgggtaaa 81
             ||||||||||||||||||||
Sbjct: 22634 caggatatttgttgggtaaa 22615
to top
>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence,
             complete sequence
          Length = 101410

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 312   taactagttagttcatcatgacct 335
             ||||||||||||||||||| ||||
Sbjct: 23538 taactagttagttcatcattacct 23515
to top
>emb|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 211018

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tttgttgggtaaacaaagga 88
              ||||||||||||||||||||
Sbjct: 153963 tttgttgggtaaacaaagga 153982
to top
>emb|BX322662.12| Zebrafish DNA sequence from clone CH211-222C18 in linkage group 23,
              complete sequence
          Length = 209409

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    actactaccctagtaactat 222
              ||||||||||||||||||||
Sbjct: 170713 actactaccctagtaactat 170732



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    actactaccctagtaactat 222
              ||||||||||||||||||||
Sbjct: 169494 actactaccctagtaactat 169513
to top
>gb|AC096564.3| Homo sapiens BAC clone RP11-286E11 from 4, complete sequence
          Length = 163317

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     acaaaggaagcaacaaaaag 100
              ||||||||||||||||||||
Sbjct: 118031 acaaaggaagcaacaaaaag 118012
to top
>gb|AC007754.4|AC007754 Drosophila melanogaster, chromosome 3R, region 87E-87E, BAC clone
             BACR05K08, complete sequence
          Length = 188967

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    taaacaaaggaagcaacaaa 97
             ||||||||||||||||||||
Sbjct: 26575 taaacaaaggaagcaacaaa 26594
to top
>gb|AC009211.5|AC009211 Drosophila melanogaster, chromosome 3R, region 87D11-87E3, BAC clone
              BACR48D15, complete sequence
          Length = 184272

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     taaacaaaggaagcaacaaa 97
              ||||||||||||||||||||
Sbjct: 172911 taaacaaaggaagcaacaaa 172930
to top
>emb|AL928887.13| Zebrafish DNA sequence from clone CH211-136O14 in linkage group 23,
              complete sequence
          Length = 174456

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    actactaccctagtaactat 222
              ||||||||||||||||||||
Sbjct: 151970 actactaccctagtaactat 151951



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    actactaccctagtaactat 222
              ||||||||||||||||||||
Sbjct: 151280 actactaccctagtaactat 151261



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    actactaccctagtaactat 222
              ||||||||||||||||||||
Sbjct: 150588 actactaccctagtaactat 150569
to top
>gb|AE003699.3| Drosophila melanogaster chromosome 3R, section 37 of 118 of the
             complete sequence
          Length = 208424

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    taaacaaaggaagcaacaaa 97
             ||||||||||||||||||||
Sbjct: 43161 taaacaaaggaagcaacaaa 43180
to top
>emb|AL807829.21| Zebrafish DNA sequence from clone CH211-246M4 in linkage group 9,
              complete sequence
          Length = 166114

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    acatgaagtgacatgacatg 305
              ||||||||||||||||||||
Sbjct: 129526 acatgaagtgacatgacatg 129545
to top
>gb|AC140110.2| Mus musculus BAC clone RP23-29H6 from 6, complete sequence
          Length = 214089

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     caggatatttgttgggtaaa 81
              ||||||||||||||||||||
Sbjct: 153247 caggatatttgttgggtaaa 153228
to top
>gb|AC163446.2| Mus musculus chromosome 5, clone RP23-151G22, complete sequence
          Length = 190466

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gacaggatatttgttgggta 79
             ||||||||||||||||||||
Sbjct: 58454 gacaggatatttgttgggta 58435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,129,102
Number of Sequences: 3902068
Number of extensions: 3129102
Number of successful extensions: 62491
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62450
Number of HSP's gapped (non-prelim): 41
length of query: 347
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 325
effective length of database: 17,147,199,772
effective search space: 5572839925900
effective search space used: 5572839925900
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top