ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20g02 |
|---|---|
| Clone Library Name | barley_pub |
>CAMT_PETCR (P28034) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCOAMT) (CCOAOMT) Length = 241 Score = 55.1 bits (131), Expect = 4e-08 Identities = 25/52 (48%), Positives = 34/52 (65%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+VA PA P+ + + +LN LAADPRIE+C L + DGVT+CRR+ Sbjct: 189 GSVAQPADAPMRKYVRYYRDFVIELNKALAADPRIEICMLPVGDGVTLCRRI 240
>CAMT_MESCR (O65162) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 254 Score = 55.1 bits (131), Expect = 4e-08 Identities = 22/52 (42%), Positives = 34/52 (65%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+VA PA P+ + + + N +AADPR+E+CQL + DG+T+CRR+ Sbjct: 202 GSVAAPADAPMRKYVRYYRDFVMEFNKAIAADPRVEICQLPVGDGITLCRRI 253
>CAMT_SOLTU (Q8H9B6) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 242 Score = 54.7 bits (130), Expect = 5e-08 Identities = 24/52 (46%), Positives = 33/52 (63%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LAADPRIE+CQL + DG+T+CRR+ Sbjct: 190 GSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICQLPVGDGITLCRRI 241
>CAMT2_POPTR (O65922) Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2) (CCoAOMT-2) Length = 247 Score = 53.9 bits (128), Expect = 9e-08 Identities = 23/52 (44%), Positives = 33/52 (63%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V PA P+ + + +LN LAADPRIE+C L + DG+T+CRR+ Sbjct: 195 GSVVAPADAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246
>CAMT_ZINEL (Q41720) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 245 Score = 53.5 bits (127), Expect = 1e-07 Identities = 22/52 (42%), Positives = 33/52 (63%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G++ PA PL + + +LN LA DPR+E+CQL + DG+T+CRR+ Sbjct: 193 GSLVAPADAPLRKYVRYYRDFVLELNKALAVDPRVEICQLPVGDGITLCRRI 244
>CAMT2_EUCGL (Q9SWB8) Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2) (CCoAOMT-2) Length = 247 Score = 53.1 bits (126), Expect = 2e-07 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V PA PL + + +LN LA DPR+E+C L + DG+T+CRRV Sbjct: 195 GSVVAPADAPLRKYVRYYRDFVLELNKALAVDPRVEICMLPVGDGITLCRRV 246
>CAMT1_EUCGL (O81185) Caffeoyl-CoA O-methyltransferase 1 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 1) (CCoAMT-1) (CCoAOMT-1) Length = 246 Score = 52.8 bits (125), Expect = 2e-07 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LAADPRIE+C L + DG+T+CRR+ Sbjct: 194 GSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 245
>CAMT4_ARATH (O49499) Probable caffeoyl-CoA O-methyltransferase At4g34050 (EC| 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 259 Score = 52.8 bits (125), Expect = 2e-07 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P P+ + + +LN LAADPRIE+C L + DG+TICRR+ Sbjct: 207 GSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 258
>CAMT_EUCGU (O04854) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 249 Score = 52.8 bits (125), Expect = 2e-07 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LAADPRIE+C L + DG+T+CRR+ Sbjct: 194 GSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 245
>CAMT5_TOBAC (O04899) Caffeoyl-CoA O-methyltransferase 5 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 5) (CCoAMT-5) (CCoAOMT-5) Length = 240 Score = 52.0 bits (123), Expect = 3e-07 Identities = 22/52 (42%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P P+ + + +LN LAADPRIE+C L + DG+T+CRR+ Sbjct: 188 GSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 239
>CAMT_VITVI (Q43237) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCOAMT) (CCOAOMT) Length = 242 Score = 52.0 bits (123), Expect = 3e-07 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LAADPRIE+C L + DG+T+CRR+ Sbjct: 190 GSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRL 241
>CAMT_POPTM (Q43095) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 247 Score = 52.0 bits (123), Expect = 3e-07 Identities = 22/52 (42%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P P+ + + +LN LAADPRIE+C L + DG+T+CRR+ Sbjct: 195 GSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246
>CAMT_MEDSA (Q40313) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 247 Score = 52.0 bits (123), Expect = 3e-07 Identities = 23/52 (44%), Positives = 31/52 (59%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LA DPRIE+C L + DG+TICRR+ Sbjct: 195 GSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246
>CAMT6_TOBAC (Q42945) Caffeoyl-CoA O-methyltransferase 6 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 6) (CCoAMT-6) (CCoAOMT-6) Length = 247 Score = 52.0 bits (123), Expect = 3e-07 Identities = 22/52 (42%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P P+ + + +LN LAADPRIE+C L + DG+T+CRR+ Sbjct: 195 GSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246
>CAMT1_POPTR (O65862) Caffeoyl-CoA O-methyltransferase 1 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 1) (CCoAMT-1) (CCoAOMT-1) Length = 247 Score = 52.0 bits (123), Expect = 3e-07 Identities = 22/52 (42%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P P+ + + +LN LAADPRIE+C L + DG+T+CRR+ Sbjct: 195 GSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246
>CAMT1_TOBAC (O24144) Caffeoyl-CoA O-methyltransferase 1 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 1) (CCoAMT-1) (CCoAOMT-1) Length = 239 Score = 51.6 bits (122), Expect = 4e-07 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LAAD RIE+CQL + DG+T+CRR+ Sbjct: 187 GSVVAPPDAPLRKYVRYYRDFVLELNKALAADSRIEICQLPVGDGITLCRRI 238
>CAMT2_MAIZE (Q9XGD5) Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2) (CCoAOMT-2) Length = 264 Score = 51.6 bits (122), Expect = 4e-07 Identities = 24/52 (46%), Positives = 33/52 (63%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V LP P+ + + LN+ LAAD R+E+CQL + DGVT+CRRV Sbjct: 212 GSVVLPDDAPMRKYIRFYRDFVLALNSALAADDRVEICQLPVGDGVTLCRRV 263
>CAMT4_TOBAC (O24151) Caffeoyl-CoA O-methyltransferase 4 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 4) (CCoAMT-4) (CCoAOMT-4) Length = 242 Score = 51.6 bits (122), Expect = 4e-07 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LAAD RIE+CQL + DG+T+CRR+ Sbjct: 190 GSVVAPPDAPLRKYVRYYRDFVLELNKALAADSRIEICQLPVGDGITLCRRI 241
>CAMT3_TOBAC (O24150) Caffeoyl-CoA O-methyltransferase 3 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 3) (CCoAMT-3) (CCoAOMT-3) Length = 242 Score = 51.6 bits (122), Expect = 4e-07 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LAAD RIE+CQL + DG+T+CRR+ Sbjct: 190 GSVVAPPDAPLRKYVRYYRDFVLELNKALAADSRIEICQLPVGDGITLCRRI 241
>CAMT2_TOBAC (O24149) Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2) (CCoAOMT-2) Length = 242 Score = 51.6 bits (122), Expect = 4e-07 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LAAD RIE+CQL + DG+T+CRR+ Sbjct: 190 GSVVAPPDAPLRKYVRYYRDFVLELNKALAADSRIEICQLPVGDGITLCRRI 241
>CAMT1_MAIZE (Q9XGD6) Caffeoyl-CoA O-methyltransferase 1 (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase 1) (CCoAMT-1) (CCoAOMT-1) Length = 258 Score = 50.4 bits (119), Expect = 1e-06 Identities = 24/52 (46%), Positives = 32/52 (61%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V LP P+ + + LN LAAD R+E+CQL + DGVT+CRRV Sbjct: 206 GSVVLPDDAPMRKYIRFYRDFVLVLNKALAADDRVEICQLPVGDGVTLCRRV 257
>CAMT1_ARATH (Q9C9W3) Putative caffeoyl-CoA O-methyltransferase At1g67980 (EC| 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 232 Score = 49.7 bits (117), Expect = 2e-06 Identities = 21/36 (58%), Positives = 29/36 (80%) Frame = -1 Query: 360 FSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV 253 + AAL + N KLA DPR+EV Q++I DG+T+CRR+V Sbjct: 197 YRAALIEFNKKLALDPRVEVSQISIGDGITLCRRLV 232
>CAMT_PINTA (Q9ZTT5) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 259 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/52 (44%), Positives = 31/52 (59%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P PL + + +LN LA DPRIE+ Q+ + DGVT+CRRV Sbjct: 207 GSVVAPPDAPLRKYVRYYRDFVMELNKALAVDPRIEISQIPVLDGVTLCRRV 258
>CAMT2_ARATH (Q9C9W4) Probable caffeoyl-CoA O-methyltransferase At1g67990 (EC| 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 232 Score = 43.9 bits (102), Expect = 9e-05 Identities = 17/36 (47%), Positives = 27/36 (75%) Frame = -1 Query: 360 FSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV 253 + AL + N LA DPR+E+ Q++I DG+T+CRR++ Sbjct: 197 YREALLEFNKILARDPRVEIAQISIGDGLTLCRRLI 232
>CAMT3_ARATH (Q9C5D7) Probable caffeoyl-CoA O-methyltransferase At4g26220 (EC| 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 232 Score = 43.5 bits (101), Expect = 1e-04 Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = -1 Query: 411 GTVALP-AGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+VA P + TP ++ + A +LN KL+AD R+++ Q A+ DG+TICRR+ Sbjct: 181 GSVAEPDSSTPEWRIEVK--KATLELNKKLSADQRVQISQAALGDGITICRRL 231
>CAMT_STELP (Q43161) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 241 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/52 (40%), Positives = 29/52 (55%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 GTVALP + + D + LN L +D RI++ L + DG+T CRRV Sbjct: 190 GTVALPE-SEVPDFMKNNWVCVTKLNEILGSDARIDIAHLPVGDGITFCRRV 240
>CAMT_CITNA (Q9SLP8) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 232 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 G+V P P+ + +L LA DPRIE+C L + DG+T+ RR+ Sbjct: 180 GSVVGPPDAPMRKYLRYCRDFVLELIKALAVDPRIEICMLPVGDGITLSRRI 231
>CAMT_POPKI (P93711) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)| (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) Length = 235 Score = 37.4 bits (85), Expect = 0.009 Identities = 14/31 (45%), Positives = 24/31 (77%) Frame = -1 Query: 348 LRDLNAKLAADPRIEVCQLAIADGVTICRRV 256 + + N L++D R+E+ Q++I DGVT+CRR+ Sbjct: 204 IMEFNKLLSSDLRVEISQISIGDGVTLCRRL 234
>MDMC_STRMY (Q00719) O-methyltransferase mdmC (EC 2.1.1.-)| Length = 221 Score = 35.8 bits (81), Expect = 0.025 Identities = 22/51 (43%), Positives = 29/51 (56%) Frame = -1 Query: 411 GTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRR 259 G VA PA D DT A+R LN L D R+++ L +ADG+T+ RR Sbjct: 175 GRVADPAA---DDPDT---VAVRTLNDLLRDDERVDIALLTVADGITLARR 219
>SMS2_CAEEL (Q20735) Putative phosphatidylcholine:ceramide| cholinephosphotransferase 2 (EC 2.7.-.-) (Sphingomyelin synthase 2) Length = 335 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -2 Query: 194 DFVPYQPLPLINCIIFPCQRW 132 D VP QPLP + +I P QRW Sbjct: 82 DVVPRQPLPDLTFMIIPQQRW 102
>LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precursor| (LSH-B/CG-B) (Lutenizing hormone beta subunit) Length = 169 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = -1 Query: 345 RDLNAKLAADPRIEVCQLAIADGVTICRRVV*TGVRSGPA*SIGIPRAWSRFRSLPAASL 166 R +NA LAA+ E C + I +IC + VR PA IP+ +R L AS+ Sbjct: 30 RPINATLAAEK--EACPICITFTTSICAGYCPSMVRVMPAALPAIPQPVCTYRELRFASI 87
>LSHB_EQUBU (O46641) Lutropin/choriogonadotropin beta chain precursor| (LSH-B/CG-B) (Lutenizing hormone beta subunit) Length = 169 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = -1 Query: 345 RDLNAKLAADPRIEVCQLAIADGVTICRRVV*TGVRSGPA*SIGIPRAWSRFRSLPAASL 166 R +NA LAA+ E C + I +IC + VR PA IP+ +R L AS+ Sbjct: 30 RPINATLAAEK--EACPICITFTTSICAGYCPSMVRVMPAALPPIPQPVCTYRELRFASI 87
>BCHN_RHOGE (Q9JPA2) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 427 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = -1 Query: 399 LPAGTPLS---DLDTRFSAALRDLNAKLAADPRIEVCQLAIAD 280 LPAGTPLS DL+ R L+ AA P I VC L +A+ Sbjct: 347 LPAGTPLSEGQDLE-------RQLDRCRAARPDIVVCGLGLAN 382
>AGO1_ARATH (O04379) Argonaute protein| Length = 1048 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/40 (42%), Positives = 24/40 (60%) Frame = +1 Query: 46 EPLLPLLSSNFESKKVLLKTRNHQMLHASQRWQGKIIQLI 165 EP+LP +S+ E + +LKTR H S+ QGK I L+ Sbjct: 640 EPVLPPVSARPEQVEKVLKTRYHDA--TSKLSQGKEIDLL 677
>POLG_EC11G (P29813) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2194 Score = 27.3 bits (59), Expect = 8.8 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Frame = -1 Query: 405 VALPAGTPLSDLDTRFSAALRDLNAKLAAD-PRIEVCQLAIADGVTICRRV---V*TGVR 238 + +PAGTP S F +A D + +L D P IE L D V V + Sbjct: 528 IVVPAGTPTSCSIMCFVSACNDFSVRLLKDTPFIEQTALLQGDVVEAVENAVARVADTIG 587 Query: 237 SGPA*SIGIP 208 SGP+ S +P Sbjct: 588 SGPSNSQAVP 597
>EXO1_MOUSE (Q9QZ11) Exonuclease 1 (EC 3.1.-.-) (mExo1) (Exonuclease I)| Length = 837 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +1 Query: 34 ST*VEPLLPLLSSNFESKKVLLKTRNHQMLHASQRWQGKIIQLIKGSGW 180 +T ++PL+P S K ++TR H + Q KI +L K G+ Sbjct: 743 TTKIKPLVPARVSGLSKKSGSMQTRKHHDVENKPGLQTKISELWKNFGF 791
>RUMB_VIBCH (Q9KL20) 23S rRNA (uracil-5-)-methyltransferase rumB (EC 2.1.1.-)| (23S rRNA(M-5-U747)-methyltransferase) Length = 375 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -2 Query: 221 ASGSPVRGVDFVPYQPLPLINCIIF--PCQRWLA*SI*WFRV 102 A+ +P+ G++ QPL L+ C ++ P Q LA W R+ Sbjct: 66 AAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRI 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,458,712 Number of Sequences: 219361 Number of extensions: 764415 Number of successful extensions: 1742 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 1719 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1742 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
