ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20f12 |
|---|---|
| Clone Library Name | barley_pub |
>PIC2_YEAST (P40035) Mitochondrial phosphate carrier protein 2 (Phosphate| transport protein 2) (PTP 2) (mPic 2) (Pi carrier isoform 2) Length = 300 Score = 58.5 bits (140), Expect = 8e-09 Identities = 30/44 (68%), Positives = 34/44 (77%) Frame = -2 Query: 452 KKIGMLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVMVGLPTTG 321 +KIG GL+ GL +RIVMIGTLT QW IYD+FK VGLPTTG Sbjct: 258 QKIGFTGLWN-GLMVRIVMIGTLTSFQWLIYDSFKAYVGLPTTG 300
>MPCP_CHOFU (O61703) Phosphate carrier protein, mitochondrial precursor| (Phosphate transport protein) (PTP) Length = 349 Score = 48.5 bits (114), Expect = 8e-06 Identities = 28/56 (50%), Positives = 36/56 (64%) Frame = -2 Query: 455 VKKIGMLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 288 V K+G G++ +GL RI+MIGTLT QW IYDA KV + +P PP A + ES Sbjct: 288 VGKLGFAGVW-KGLGPRIIMIGTLTALQWFIYDAVKVWLRMP----RPPPAEMPES 338
>MPCP_CAEEL (P40614) Phosphate carrier protein, mitochondrial precursor (PTP)| Length = 340 Score = 48.5 bits (114), Expect = 8e-06 Identities = 27/57 (47%), Positives = 35/57 (61%) Frame = -2 Query: 455 VKKIGMLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEESA 285 +KK+G G++ +GL RI+MIGTLT QW IYD+ KV + LP PP P A Sbjct: 281 LKKLGFAGVW-KGLVPRIIMIGTLTALQWFIYDSVKVALNLPRP--PPPEMPASLKA 334
>MPCP_YEAST (P23641) Mitochondrial phosphate carrier protein (Phosphate| transport protein) (PTP) (mPic 1) (Mitochondrial import receptor) (p32) Length = 311 Score = 46.2 bits (108), Expect = 4e-05 Identities = 22/43 (51%), Positives = 29/43 (67%) Frame = -2 Query: 452 KKIGMLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVMVGLPTT 324 K++G G F GLP R+VM+GTLT Q+GIY + K +G P T Sbjct: 262 KQLGFFGSFA-GLPTRLVMVGTLTSLQFGIYGSLKSTLGCPPT 303
>MPCP_HUMAN (Q00325) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 362 Score = 45.4 bits (106), Expect = 7e-05 Identities = 26/56 (46%), Positives = 35/56 (62%) Frame = -2 Query: 455 VKKIGMLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 288 +K++G G++ +GL RI+MIGTLT QW IYD+ KV LP PP + ES Sbjct: 303 LKRLGFKGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRLP----RPPPPEMPES 353
>MPCP_BOVIN (P12234) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 362 Score = 45.4 bits (106), Expect = 7e-05 Identities = 26/56 (46%), Positives = 35/56 (62%) Frame = -2 Query: 455 VKKIGMLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 288 +K++G G++ +GL RI+MIGTLT QW IYD+ KV LP PP + ES Sbjct: 303 LKRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRLP----RPPPPEMPES 353
>MPCP_MOUSE (Q8VEM8) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 357 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/56 (44%), Positives = 35/56 (62%) Frame = -2 Query: 455 VKKIGMLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 288 ++++G G++ +GL RI+MIGTLT QW IYD+ KV LP PP + ES Sbjct: 298 LQRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRLP----RPPPPEMPES 348
>MPCP_RAT (P16036) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 356 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/56 (44%), Positives = 35/56 (62%) Frame = -2 Query: 455 VKKIGMLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 288 ++++G G++ +GL RI+MIGTLT QW IYD+ KV LP PP + ES Sbjct: 297 LQRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRLP----RPPPPEMPES 347
>LEP4_MYXXA (O30387) Type 4 prepilin-like proteins leader peptide-processing| enzyme [Includes: Leader peptidase (EC 3.4.23.43) (Prepilin peptidase); N-methyltransferase (EC 2.1.1.-)] Length = 335 Score = 32.0 bits (71), Expect = 0.78 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -2 Query: 281 LIFAAMTMYSWLWLLVDGTVSVTCLAPKIFCYCSRWLLSLS 159 L FA + + W + LV V V+ L P F W+L LS Sbjct: 95 LFFACLRRFGWTYELVPALVLVSLLVPLAFIDLDHWILPLS 135
>TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin)| Length = 1353 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = -1 Query: 378 CPVGNL*CV*SYGGTP-DHRRCSTSCSGRGISLIDFCCYDDVFLVVVIGGWDC 223 C G C Y G RC +CSGRG+ C +D + GG DC Sbjct: 275 CDNGTCVCAEGYAGEDCGWLRCPNACSGRGVCQDGLCICEDGY-----GGQDC 322
>M1_DHVI1 (Q01479) Matrix protein 1 (M1)| Length = 270 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +1 Query: 52 LRSNSLAVLKLIMSSIKLSRGAKKGLFRLLNEFLSSDRDNNHLLQ*QKILGAKQVTDTV 228 L SN L K M+S+K AK GL + N S DR+ +L IL + + TV Sbjct: 73 LISNRLKGGKYDMNSVKKGYKAKDGLQEISNYISSLDREGKQVLACMLILSTQSIGKTV 131
>PALF_KLULA (Q6CTM7) pH-response regulator protein palF/RIM8| Length = 572 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +2 Query: 110 GGQKKAYFACLMSSSHLIETITICYNNKRFWVLNK*LIQSHPPI 241 GG+ K F+C ++ +L+ +I + R+WV + Q PPI Sbjct: 133 GGEHKFPFSCKINGKNLVSSIDFKKGSIRYWVQAELHAQKTPPI 176
>HDA4_CAEBR (Q613L4) Histone deacetylase 4| Length = 892 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Frame = +1 Query: 238 NNHNQEYIVIAAKINQADSSTGATGGAP---PVVGSPTITLNAS*IPHWAPVRVPIM 399 ++ + + V+ A++ +A SSTG+TGGA PV+ S + L A+ + P R+ ++ Sbjct: 5 SSSSSSFPVVFARMEEASSSTGSTGGAMAGIPVIPSTSAALLAN--TNLEPERIAVL 59
>Y076_MYCPN (P75041) Hypothetical protein MG061 homolog 1 (R02_orf564o)| Length = 564 Score = 29.6 bits (65), Expect = 3.8 Identities = 21/72 (29%), Positives = 30/72 (41%) Frame = -2 Query: 452 KKIGMLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEESA*LIF 273 K IGM G+ +V++ LTG W I A G + P+ E A F Sbjct: 305 KMIGMYGICL------VVLVNPLTGGWWNILQAVSPASSFNVKDGVKTLKPL-EGAGGYF 357 Query: 272 AAMTMYSWLWLL 237 A + + LW+L Sbjct: 358 AGLPTLAILWVL 369
>Y338_MYCGE (P47580) Hypothetical lipoprotein MG338 precursor| Length = 1271 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +1 Query: 43 WQNLRSNSLAVLKLIMSSIKLSRGAKKGLFRLLNEFLSSDRDNNHLLQ*QKIL-GAKQVT 219 W+N ++NSL + K I S+ + + +G L L + H + Q+IL G K++ Sbjct: 1198 WKNNKANSLGLKKEIFMSLLIEQALDEGTQELAFLDLIRENQKQHQREHQQILVGDKRLY 1257 Query: 220 DTVPST 237 D + T Sbjct: 1258 DILGQT 1263
>DAPD_BUCBP (Q89AP4) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate| N-succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase) Length = 274 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +1 Query: 160 DRDNNHLLQ*QKILGAKQVTDTVPSTNNHNQEYIVIAAKIN-QADSSTG 303 DR+N +L + G+ V ++PS NN N +VI ++N Q S TG Sbjct: 216 DRNNKKILYGKVPSGSVVVPGSLPSKNNCNLYCVVIVKQVNAQTLSKTG 264 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,906,368 Number of Sequences: 219361 Number of extensions: 1657742 Number of successful extensions: 3943 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3843 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3941 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
