Clone Name | rbart20f09 |
---|---|
Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 63.2 bits (152), Expect = 3e-10 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%) Frame = -1 Query: 468 RSDVYRPFITAFDRAMGPSAKVAAVAPFELCYDSSKLSPTLSGYSVPQVDVMLE--GGTN 295 + VY+ F F + + A+V +VAPF LC++S+K++ + P VD++++ G Sbjct: 298 QQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVMDKPNGPV 351 Query: 294 FTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDNDKKTLSF-TPY 118 + + G + M Q G C V +G + +G Q+E LVV D + + F T Sbjct: 352 WRISGEDLMVQAQPGVTCLG-VMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSS 410 Query: 117 LPARGFSCSN-FNFTRA 70 L + G C++ FNF A Sbjct: 411 LHSHGVKCADLFNFANA 427
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 62.0 bits (149), Expect = 7e-10 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%) Frame = -1 Query: 468 RSDVYRPFITAFDRAMGPSAKVAAVAPFELCYDSSKLSPTLSGYSVPQVDVMLE--GGTN 295 + +Y+ F F + + A+V +VAPF LC++S+K++ + P VD++++ G Sbjct: 304 QQSLYQAFTQVFAQQLEKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVMDKPNGPV 357 Query: 294 FTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDNDKKTLSF-TPY 118 + + G + M Q G C V +G V +G Q+E KL+V D + + F T Sbjct: 358 WRISGEDLMVQAQPGVTCLG-VMNGGMQPRAEVTLGTRQLEEKLMVFDLARSRVGFSTSS 416 Query: 117 LPARGFSCSN-FNFTRA 70 L + G C + FNF A Sbjct: 417 LHSHGVKCGDLFNFANA 433
>RGA_DROME (Q94547) Regulator of gene activity (Protein regena)| Length = 585 Score = 31.6 bits (70), Expect = 1.0 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Frame = -1 Query: 348 LSGYSVPQVDVMLEG------GTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIG 187 L G P +++ G G+N VVGGN + V SG A G G++ +G Sbjct: 254 LDGTEKPMNSIVVSGSASGSSGSNVGVVGGNGLGAVGSGIGGLAVGGGGGAGSSGGGGVG 313 Query: 186 G 184 G Sbjct: 314 G 314
>SYH_HAEIN (P43823) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 422 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Frame = -1 Query: 276 NSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDN-----DKKTL 133 N+M +SG F ++ +GAT A+VIG +++NK VV+ + D++TL Sbjct: 357 NTMLHCSSGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTL 409
>PRM2_RAT (P11248) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 104 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/43 (41%), Positives = 20/43 (46%) Frame = +1 Query: 283 HHREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLR 411 HHR R H +H R R+RRR R RRHRR R Sbjct: 48 HHRHRRCKRLHRIHKRRRSCRRRRRHSCR----HRRRHRRGCR 86
>PCBD_PROMT (Q46JW9) Divinyl chlorophyll a/b light-harvesting protein pcbD| Length = 370 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -1 Query: 324 VDVMLEGGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENK 166 +D+ + F +G +S+ V G A AF + TGAT +V G Q ENK Sbjct: 180 LDLTMIWNRQFDFIGIDSLEDVMGGHAFLAFAEL--TGATIHMVAGSTQWENK 230
>SYH_HAEI8 (Q4QNH3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 423 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = -1 Query: 276 NSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDN-----DKKTL 133 N+M + G F ++ +GAT A+VIG +++NK VV+ + D++TL Sbjct: 358 NTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTL 410
>FBX31_HUMAN (Q5XUX0) F-box only protein 31| Length = 539 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +1 Query: 307 LQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLRAGSHGAVEGR 441 L+H + L ++ +L R+V ++ R R++ + G H A EGR Sbjct: 348 LRHRIQLPDLENQRNFNELSRIVLEVRERVRQEQQEGGHEAGEGR 392
>KREM2_MOUSE (Q8K1S7) Kremen protein 2 precursor (Kringle-containing protein| marking the eye and the nose) (Kringle domain-containing transmembrane protein 2) (Dickkopf receptor 2) Length = 461 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = -1 Query: 378 CYDSSKLSPTLSGYSVPQVDVMLEGGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPA 199 C+ S P LSG S + ++ F + G +A V +G ACF +S PA Sbjct: 126 CFVDSGAPPALSGPSGTSTKLTVQVCLRFCRMKGYQLAGVEAGYACFCGSESDLARGRPA 185
>RNPA_PROMI (P22835) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 119 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +1 Query: 286 HREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRR 402 H+ PA+ V +R GVA QL V+ +L RRH R Sbjct: 76 HQHQLPAMDFVVLVRKGVAELDNHQLTEVLGKLWRRHCR 114
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +1 Query: 265 RHGVSPHHREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLRA 414 RH +SPHH++ P LQHH + +Q+++Q Q ++ H++ +A Sbjct: 541 RH-LSPHHQQQSPLLQHHQQQQQ--QQQQQQQHLHQQQQQQQHHQQQPQA 587
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/45 (37%), Positives = 20/45 (44%) Frame = +1 Query: 280 PHHREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLRA 414 PH R+ R HH H R R R R+ A + R RR RA Sbjct: 324 PHSRKRRDTGAHHRHWRRRRRRVRHREGALPAAHPDDRRRRRRRA 368
>MDH_THETE (Q704B2) Malate dehydrogenase (EC 1.1.1.37)| Length = 308 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -1 Query: 231 VQSGSTGATPAVVIGGFQMENKLVVLD 151 V SG GAT A ++G ++NK+V++D Sbjct: 5 VGSGRVGATTAAMLGVLGVDNKIVLID 31
>SP1_MOUSE (O89090) Transcription factor Sp1| Length = 784 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 285 VGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQ 178 VGGN+ N G A F+ +S STG++ + GG Q Sbjct: 21 VGGNNGGSGNGGGAAFSQTRSSSTGSSSSSGGGGGQ 56
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +1 Query: 259 HLRHGVSPHHREVRPALQHHVHLRHGVARQRRRQ 360 H +H H QHH+HL H A+Q+ Q Sbjct: 26 HQQHAQQQQHHLHMQQAQHHLHLSHQQAQQQHMQ 59
>SP1_RAT (Q01714) Transcription factor Sp1| Length = 786 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 285 VGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQ 178 VGGN+ N G A F+ +S STG++ + GG Q Sbjct: 20 VGGNNGGSGNGGGAAFSQTRSSSTGSSSSSGGGGGQ 55
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 262 LRHGVSPHHREVRPALQHHVHLRHGVARQRRRQ 360 L H +S HH PAL HH L+H + Q++ Q Sbjct: 22 LHHHLSHHHH---PALHHHPVLQHHYSLQQQHQ 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,174,089 Number of Sequences: 219361 Number of extensions: 971902 Number of successful extensions: 3837 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3687 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3828 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)