ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20f07 |
|---|---|
| Clone Library Name | barley_pub |
>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor| Length = 286 Score = 35.0 bits (79), Expect = 0.044 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 11/71 (15%) Frame = -1 Query: 370 DITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFPL-----------D 224 D+ C CV A E+ C R + Y SCM RY F L D Sbjct: 88 DVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFLSTLETKPNTYWSSDD 147 Query: 223 GADKSADEVGQ 191 KS D+ GQ Sbjct: 148 PIPKSYDKFGQ 158
>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor| Length = 287 Score = 31.6 bits (70), Expect = 0.49 Identities = 13/39 (33%), Positives = 16/39 (41%) Frame = -1 Query: 370 DITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 254 D+ C CV A E+ C R + Y CM RY Sbjct: 91 DVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRY 129
>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 474 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = -1 Query: 157 CLWSTNY--V*STTVLFTRALQLVVRTWSWWW 68 CL +TNY + S T++ R LQL++ + WW Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359
>KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) (LAM)| Length = 416 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 5/24 (20%) Frame = -2 Query: 114 LRGHSSSLCVP-----GPGGGGES 58 LRGH+S CVP PGGGG++ Sbjct: 315 LRGHTSGYCVPTFVVDAPGGGGKT 338
>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor| Length = 287 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/39 (30%), Positives = 15/39 (38%) Frame = -1 Query: 370 DITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 254 D+ C CV A E+ C R + CM RY Sbjct: 87 DVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRY 125
>NU4M_MACRO (P92668) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 459 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = -1 Query: 157 CLWSTNY--V*STTVLFTRALQLVVRTWSWWW 68 CL +TNY + S T++ R LQL++ WW Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMCTWW 359
>CP070_MOUSE (Q922R1) UPF0183 protein C16orf70 homolog| Length = 422 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -1 Query: 349 GLCVAQAVAELPNYCRYRRGCRVIYS 272 G+ +AQAVA L +CR R +V+YS Sbjct: 22 GMPLAQAVAILQKHCRIIRNVQVLYS 47
>DYR1B_HUMAN (Q9Y463) Dual specificity tyrosine-phosphorylation-regulated kinase| 1B (EC 2.7.12.1) (Mirk protein kinase) (Minibrain-related kinase) Length = 629 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/57 (35%), Positives = 24/57 (42%) Frame = +3 Query: 183 LSHCPTSSADLSAPSSGKKKGYTS*RAMQLL*ITRHPRRYRQ*LGSSATACATHSPQ 353 L CP+SS S SSG G +S R+ RY G T C +SPQ Sbjct: 455 LDTCPSSSTASSISSSGGSSGSSSDNRTY-----RYSNRYCGGPGPPITDCEMNSPQ 506
>SRY_TURTR (Q864Q0) Sex-determining region Y protein (Testis-determining| factor) Length = 201 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 19 IQG*LRASHTLTNGFPTTTRTRYAQRAGVPS 111 IQG LR HT TNG P T + + P+ Sbjct: 158 IQGRLRQGHTFTNGKPVKPLTAHEHKQLTPA 188
>SRY_PENEL (Q864P6) Sex-determining region Y protein (Testis-determining| factor) Length = 201 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 19 IQG*LRASHTLTNGFPTTTRTRYAQRAGVPS 111 IQG LR HT TNG P T + + P+ Sbjct: 158 IQGRLRQGHTFTNGKPVKPLTAHEHKQLTPA 188
>SRY_ORCOR (Q864P5) Sex-determining region Y protein (Testis-determining| factor) Length = 201 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 19 IQG*LRASHTLTNGFPTTTRTRYAQRAGVPS 111 IQG LR HT TNG P T + + P+ Sbjct: 158 IQGRLRQGHTFTNGKPVKPLTAHEHKQLTPA 188
>SRY_ORCBR (Q864P3) Sex-determining region Y protein (Testis-determining| factor) Length = 201 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 19 IQG*LRASHTLTNGFPTTTRTRYAQRAGVPS 111 IQG LR HT TNG P T + + P+ Sbjct: 158 IQGRLRQGHTFTNGKPVKPLTAHEHKQLTPA 188
>SRY_LAGOL (Q864P8) Sex-determining region Y protein (Testis-determining| factor) Length = 201 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 19 IQG*LRASHTLTNGFPTTTRTRYAQRAGVPS 111 IQG LR HT TNG P T + + P+ Sbjct: 158 IQGRLRQGHTFTNGKPVKPLTAHEHKQLTPA 188
>SRY_GRAGR (Q864P7) Sex-determining region Y protein (Testis-determining| factor) Length = 201 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 19 IQG*LRASHTLTNGFPTTTRTRYAQRAGVPS 111 IQG LR HT TNG P T + + P+ Sbjct: 158 IQGRLRQGHTFTNGKPVKPLTAHEHKQLTPA 188
>SRY_GLOMA (Q864P4) Sex-determining region Y protein (Testis-determining| factor) Length = 201 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 19 IQG*LRASHTLTNGFPTTTRTRYAQRAGVPS 111 IQG LR HT TNG P T + + P+ Sbjct: 158 IQGRLRQGHTFTNGKPVKPLTAHEHKQLTPA 188
>SRY_DELDE (Q864P9) Sex-determining region Y protein (Testis-determining| factor) Length = 201 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 19 IQG*LRASHTLTNGFPTTTRTRYAQRAGVPS 111 IQG LR HT TNG P T + + P+ Sbjct: 158 IQGRLRQGHTFTNGKPVKPLTAHEHKQLTPA 188
>KUP1_CHRVO (Q7NUG7) Probable potassium transport system protein kup 1| Length = 640 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -1 Query: 130 STTVLFTRALQLVV--RTWSWWWWGIHLL 50 STT+ T L V+ R W W WW + L+ Sbjct: 388 STTMAITTVLFAVLARRRWHWPWWAVALV 416
>RGMC_HUMAN (Q6ZVN8) Hemojuvelin precursor (Hemochromatosis type 2 protein)| (RGM domain family member C) Length = 426 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%) Frame = -2 Query: 222 APTSRPTRSDSATRLS*TRDVFVCG-VQTTCSQLRCY---------LRGHSSSLCVPGPG 73 +P+ R + T + T + +CG + C LRC LRG SS + G G Sbjct: 7 SPSPRSSHGSPPTLSTLTLLLLLCGHAHSQCKILRCNAEYVSSTLSLRGGGSSGALRGGG 66 Query: 72 GGG 64 GGG Sbjct: 67 GGG 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,608,974 Number of Sequences: 219361 Number of extensions: 959175 Number of successful extensions: 3445 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3433 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
