ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 652 0.0
2ref|XM_475074.1| Oryza sativa (japonica cultivar-group), predic... 159 8e-36
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 159 8e-36
4dbj|AK108350.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 8e-36
5gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome... 159 8e-36
6gb|AC119432.7| Mus musculus chromosome 18, clone RP24-114K9, com... 46 0.081
7emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, comple... 42 1.3
8emb|AL137248.21| Human DNA sequence from clone RP11-316G23 on ch... 42 1.3
9dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 42 1.3
10ref|NM_063535.1| Caenorhabditis elegans T24B8.4 (T24B8.4) mRNA, ... 42 1.3
11gb|AC114804.5| Homo sapiens BAC clone RP11-1181A2 from 2, comple... 42 1.3
12gb|AC067962.6| Homo sapiens BAC clone RP11-48K7 from 2, complete... 42 1.3
13ref|XM_476361.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
14ref|XM_506132.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.0
15emb|Y10124.2|TTNARZYWV Thermus thermophilus nar operon (narCGHIJ... 40 5.0
16emb|AJ132396.1|KPN132396 Klebsiella pneumoniae D partial gmhD, w... 40 5.0
17emb|AL663099.7| Mouse DNA sequence from clone DN-384L23 on chrom... 40 5.0
18emb|BX323467.8| Zebrafish DNA sequence from clone DKEY-48N15, co... 40 5.0
19ref|NM_134474.4| Drosophila melanogaster CG32532-RA (CG32532), mRNA 40 5.0
20gb|AY728087.1| Taricha granulosa ORL1-like opioid receptor mRNA,... 40 5.0
21gb|AC011071.12|AC011071 Drosophila melanogaster, chromosome X, r... 40 5.0
22gb|AY823268.1| Klebsiella pneumoniae strain 52145 waa gene clust... 40 5.0
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
24gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, r... 40 5.0
25dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.0
26dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
27dbj|AK100796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
28dbj|AK100327.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
29gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 ... 40 5.0
30emb|BX001003.6| Zebrafish DNA sequence from clone CH211-215E7, c... 40 5.0
31emb|AL606750.13| Mouse DNA sequence from clone RP23-335A19 on ch... 40 5.0
32gb|L14835.1|MZEWUSB Zea mays (clone wusl1032) mRNA sequence 40 5.0 
>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full
            insert sequence
          Length = 1094

 Score =  652 bits (329), Expect = 0.0
 Identities = 360/373 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaaacacaaggcttggattcaagggtagctacgagctagccatacactaacaaatgga 60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1057 aacaaacacaaggcttggattcaaggctagctacgagctagccatacactaacaaatgga 998

                                                                        
Query: 61   ttccccaccaccaccaggaccaggtacgcacaacgagctggagtgccctcgtaaatagca 120
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 997  ttcgccaccaccaccaggaccaggtacgcacaacgagctggagtgccctcgtagatagca 938

                                                                        
Query: 121  ccgtagttgactacacgtagtttgtactccacaaacaaatacatcacgcgttcaagacaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  ccgtagttgactacacgtagtttgtactccacaaacaaatacatcacgcgttcaagacaa 878

                                                                        
Query: 181  tcttgtcgcactgtccgacctcgtcggccgacttgtcggcgccgtcgagcgggnnnnnnn 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 877  tcttgtcgcactgtccgacctcgtcggccgacttgtcggcgccgtcgagcgggaagaaga 818

                                                                        
Query: 241  nggggtacacctcgtagcgcgccatgcagctgctgtaaatcacgcggcacccgcgccggt 300
             |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 817  aggggtacacctcgtagcgcgccatgcagctgctgtagatctcgcggcacccgcgccggt 758

                                                                        
Query: 301  accggcagtagttgggcagctcggccacagcctgcgccacgcacagcccgcagtcggccg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  accggcagtagttgggcagctcggccacagcctgcgccacgcacagcccgcagtcggccg 698

                         
Query: 361  ccgtgatgtccct 373
            |||||||||||||
Sbjct: 697  ccgtgatgtccct 685
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>ref|XM_475074.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 819

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Minus

                                                                       
Query: 251 ctcgtagcgcgccatgcagctgctgtaaatcacgcggcacccgcgccggtaccggcagta 310
           ||||||||||||||||||||||||||| | ||||||||| || |||||| | ||||||||
Sbjct: 723 ctcgtagcgcgccatgcagctgctgtacagcacgcggcatcctcgccggaatcggcagta 664

                                                                       
Query: 311 gttgggcagctcggccacagcctgcgccacgcacagcccgcagtcggccgccgtgatgtc 370
           |||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 663 gttgggcatctccgccaccgcctgcgccacgcacagcccgcagtccgccgccgtgatgtc 604
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Plus

                                                                          
Query: 251    ctcgtagcgcgccatgcagctgctgtaaatcacgcggcacccgcgccggtaccggcagta 310
              ||||||||||||||||||||||||||| | ||||||||| || |||||| | ||||||||
Sbjct: 659666 ctcgtagcgcgccatgcagctgctgtacagcacgcggcatcctcgccggaatcggcagta 659725

                                                                          
Query: 311    gttgggcagctcggccacagcctgcgccacgcacagcccgcagtcggccgccgtgatgtc 370
              |||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 659726 gttgggcatctccgccaccgcctgcgccacgcacagcccgcagtccgccgccgtgatgtc 659785
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>dbj|AK108350.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-B11, full
           insert sequence
          Length = 1008

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Minus

                                                                       
Query: 251 ctcgtagcgcgccatgcagctgctgtaaatcacgcggcacccgcgccggtaccggcagta 310
           ||||||||||||||||||||||||||| | ||||||||| || |||||| | ||||||||
Sbjct: 762 ctcgtagcgcgccatgcagctgctgtacagcacgcggcatcctcgccggaatcggcagta 703

                                                                       
Query: 311 gttgggcagctcggccacagcctgcgccacgcacagcccgcagtcggccgccgtgatgtc 370
           |||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 702 gttgggcatctccgccaccgcctgcgccacgcacagcccgcagtccgccgccgtgatgtc 643
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>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBb0041A22, complete sequence
          Length = 117919

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Plus

                                                                        
Query: 251  ctcgtagcgcgccatgcagctgctgtaaatcacgcggcacccgcgccggtaccggcagta 310
            ||||||||||||||||||||||||||| | ||||||||| || |||||| | ||||||||
Sbjct: 4865 ctcgtagcgcgccatgcagctgctgtacagcacgcggcatcctcgccggaatcggcagta 4924

                                                                        
Query: 311  gttgggcagctcggccacagcctgcgccacgcacagcccgcagtcggccgccgtgatgtc 370
            |||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4925 gttgggcatctccgccaccgcctgcgccacgcacagcccgcagtccgccgccgtgatgtc 4984
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>gb|AC119432.7| Mus musculus chromosome 18, clone RP24-114K9, complete sequence
          Length = 190138

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 53     caaatggattccccaccaccacc 75
              |||||||||||||||||||||||
Sbjct: 101043 caaatggattccccaccaccacc 101021
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>emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, complete sequence
          Length = 38779

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 64    cccaccaccaccaggaccagg 84
             |||||||||||||||||||||
Sbjct: 19676 cccaccaccaccaggaccagg 19656
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>emb|AL137248.21| Human DNA sequence from clone RP11-316G23 on chromosome 13q12.1-12.3,
              complete sequence
          Length = 186343

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     atggattccccaccaccacca 76
              |||||||||||||||||||||
Sbjct: 167626 atggattccccaccaccacca 167606
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 169     cgttcaagacaatcttgtcgc 189
               |||||||||||||||||||||
Sbjct: 1884242 cgttcaagacaatcttgtcgc 1884262
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>ref|NM_063535.1| Caenorhabditis elegans T24B8.4 (T24B8.4) mRNA, complete cds
          Length = 2745

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  cccaccaccaccaggaccagg 84
           |||||||||||||||||||||
Sbjct: 285 cccaccaccaccaggaccagg 305
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>gb|AC114804.5| Homo sapiens BAC clone RP11-1181A2 from 2, complete sequence
          Length = 94984

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  attccccaccaccaccaggac 80
           |||||||||||||||||||||
Sbjct: 624 attccccaccaccaccaggac 644
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>gb|AC067962.6| Homo sapiens BAC clone RP11-48K7 from 2, complete sequence
          Length = 73565

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 60    attccccaccaccaccaggac 80
             |||||||||||||||||||||
Sbjct: 72189 attccccaccaccaccaggac 72209
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>ref|XM_476361.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1618

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  cgcacagcccgcagtcggcc 359
            ||||||||||||||||||||
Sbjct: 1209 cgcacagcccgcagtcggcc 1228
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>ref|XM_506132.1| PREDICTED Oryza sativa (japonica cultivar-group), B1026C12.35 mRNA
          Length = 1642

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  cgcacagcccgcagtcggcc 359
            ||||||||||||||||||||
Sbjct: 1209 cgcacagcccgcagtcggcc 1228
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>emb|Y10124.2|TTNARZYWV Thermus thermophilus nar operon (narCGHIJK genes)
          Length = 10622

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   accaccaccaggaccaggta 86
            ||||||||||||||||||||
Sbjct: 7564 accaccaccaggaccaggta 7545
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>emb|AJ132396.1|KPN132396 Klebsiella pneumoniae D partial gmhD, waaF and waaC genes and
           partial ORFX, strain 889/50
          Length = 2928

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 318 agctcggccacagcctgcgc 337
           ||||||||||||||||||||
Sbjct: 696 agctcggccacagcctgcgc 715
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>emb|AL663099.7| Mouse DNA sequence from clone DN-384L23 on chromosome 3 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (GAPD)
             pseudogene, two novel genes (4930406D18RIK)
             (4930431B09Rik), the 5' end of a novel gene
             (E130019M14RIK) and a CpG island, complete sequence
          Length = 177135

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tggattccccaccaccacca 76
             ||||||||||||||||||||
Sbjct: 85673 tggattccccaccaccacca 85654
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>emb|BX323467.8| Zebrafish DNA sequence from clone DKEY-48N15, complete sequence
          Length = 116326

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    ttgtactccacaaacaaata 161
              ||||||||||||||||||||
Sbjct: 107057 ttgtactccacaaacaaata 107076
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>ref|NM_134474.4| Drosophila melanogaster CG32532-RA (CG32532), mRNA
          Length = 4422

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   ccaccaccaccaggaccagg 84
            ||||||||||||||||||||
Sbjct: 1325 ccaccaccaccaggaccagg 1306
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>gb|AY728087.1| Taricha granulosa ORL1-like opioid receptor mRNA, complete cds
          Length = 1120

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 65  ccaccaccaccaggaccagg 84
           ||||||||||||||||||||
Sbjct: 808 ccaccaccaccaggaccagg 789
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>gb|AC011071.12|AC011071 Drosophila melanogaster, chromosome X, region 18C-18D, BAC clone
              BACR27L16, complete sequence
          Length = 182623

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     ccaccaccaccaggaccagg 84
              ||||||||||||||||||||
Sbjct: 147511 ccaccaccaccaggaccagg 147530
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>gb|AY823268.1| Klebsiella pneumoniae strain 52145 waa gene cluster, partial sequence
          Length = 14397

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  agctcggccacagcctgcgc 337
            ||||||||||||||||||||
Sbjct: 1301 agctcggccacagcctgcgc 1320
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    cgcacagcccgcagtcggcc 359
              ||||||||||||||||||||
Sbjct: 154315 cgcacagcccgcagtcggcc 154296
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>gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, region 18D-18D, BAC clone
             BACR10M08, complete sequence
          Length = 180213

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ccaccaccaccaggaccagg 84
             ||||||||||||||||||||
Sbjct: 85991 ccaccaccaccaggaccagg 86010
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     ctgtccgacctcgtcggccg 210
               ||||||||||||||||||||
Sbjct: 6086637 ctgtccgacctcgtcggccg 6086618
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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1026C12
          Length = 170240

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    cgcacagcccgcagtcggcc 359
              ||||||||||||||||||||
Sbjct: 153614 cgcacagcccgcagtcggcc 153595
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>dbj|AK100796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121F13, full
            insert sequence
          Length = 1641

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  cgcacagcccgcagtcggcc 359
            ||||||||||||||||||||
Sbjct: 1208 cgcacagcccgcagtcggcc 1227
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>dbj|AK100327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079N22, full
            insert sequence
          Length = 1617

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  cgcacagcccgcagtcggcc 359
            ||||||||||||||||||||
Sbjct: 1208 cgcacagcccgcagtcggcc 1227
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>gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 of 74 of the complete
              sequence
          Length = 346474

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     ccaccaccaccaggaccagg 84
              ||||||||||||||||||||
Sbjct: 191757 ccaccaccaccaggaccagg 191776
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>emb|BX001003.6| Zebrafish DNA sequence from clone CH211-215E7, complete sequence
          Length = 212403

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 112 taaatagcaccgtagttgactaca 135
           ||||||||| ||||||||||||||
Sbjct: 60  taaatagcaacgtagttgactaca 83
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>emb|AL606750.13| Mouse DNA sequence from clone RP23-335A19 on chromosome 3, complete
              sequence
          Length = 207366

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     tggattccccaccaccacca 76
              ||||||||||||||||||||
Sbjct: 143314 tggattccccaccaccacca 143295
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>gb|L14835.1|MZEWUSB Zea mays (clone wusl1032) mRNA sequence
          Length = 943

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 242 ggggtacacctcgtagcgcgccatgcagctgctgta 277
           |||||| | |||||||||| || |||||||||||||
Sbjct: 218 ggggtagatctcgtagcgcaccctgcagctgctgta 253


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,635,015
Number of Sequences: 3902068
Number of extensions: 2635015
Number of successful extensions: 61593
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61445
Number of HSP's gapped (non-prelim): 148
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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