ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa804... 58 3e-05
2ref|XM_476310.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
4dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
5dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
6ref|NM_185701.1| Oryza sativa (japonica cultivar-group), Ozsa805... 48 0.029
7ref|NM_185691.1| Oryza sativa (japonica cultivar-group), Ozsa804... 48 0.029
8ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA 46 0.11
9gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, co... 46 0.11
10gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, co... 46 0.11
11gb|BC036911.1| Homo sapiens KIAA1632, mRNA (cDNA clone IMAGE:513... 46 0.11
12gb|BC003695.1| Homo sapiens KIAA1632, mRNA (cDNA clone IMAGE:345... 46 0.11
13emb|AL583915.1|HSM802938 Homo sapiens mRNA; cDNA DKFZp667P2311 (... 46 0.11
14emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chro... 44 0.45
15gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromoso... 44 0.45
16gb|AC010846.13| Drosophila melanogaster clone BACR13G13, complet... 42 1.8
17gb|AC133123.3| Homo sapiens 3 BAC RP11-441E2 (Roswell Park Cance... 42 1.8
18gb|AC140112.3| Homo sapiens BAC clone RP11-1278I4 from UL, compl... 42 1.8
19emb|AL359181.28| Human DNA sequence from clone RP11-392N11 on ch... 42 1.8
20gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, comp... 42 1.8
21gb|AC008813.6| Homo sapiens chromosome 19 clone CTD-2102P23, com... 42 1.8
22gb|AC148939.8| Pan troglodytes BAC clone CH251-51M11 from chromo... 42 1.8
23dbj|AK131448.1| Homo sapiens cDNA FLJ16592 fis, clone TESTI4001984 42 1.8
24gb|AC114954.2| Homo sapiens chromosome 5 clone RP11-103A10, comp... 42 1.8
25ref|NM_167518.1| Drosophila melanogaster Traf3 CG4394-RB, transc... 42 1.8
26ref|NM_167517.1| Drosophila melanogaster Traf3 CG4394-RA, transc... 42 1.8
27ref|NM_132898.2| Drosophila melanogaster Traf3 CG4394-RC, transc... 42 1.8
28gb|AY052057.1| Drosophila melanogaster LP08566 full length cDNA 42 1.8
29gb|AC010920.11|AC010920 Drosophila melanogaster, chromosome X, r... 42 1.8
30gb|AC150749.3| Pan troglodytes BAC clone CH251-553P23 from chrom... 42 1.8
31emb|BX546492.4| Human DNA sequence from clone RP11-441E2 on chro... 42 1.8
32dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.8
33gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 ... 42 1.8
34gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome... 40 7.1
35gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, co... 40 7.1
36gb|AY569234.1| Adelotettix gigas 16S ribosomal RNA gene, partial... 40 7.1
37gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, com... 40 7.1
38gb|AF203743.1| Eonycteris spelaea 16S ribosomal RNA gene, comple... 40 7.1
39emb|AL929495.21| Zebrafish DNA sequence from clone CH211-136M16 ... 40 7.1
40gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, co... 40 7.1
41dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
42gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, comp... 40 7.1
43dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
44dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
45dbj|AK111474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
46emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, l... 40 7.1
47emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chro... 40 7.1 
>ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa8044 predicted mRNA
          Length = 1059

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 418 tctccgcgttggtgacaaccctatgcaccaggctcttgaaaaacccattgctcaaaatct 477
           |||| ||||| || || |||||||||||| ||||||| || |||||||||||||  ||||
Sbjct: 865 tctcggcgttcgtcaccaccctatgcaccgggctctttaacaacccattgctcattatct 806

                
Query: 478 ccatt 482
           |||||
Sbjct: 805 ccatt 801
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>ref|XM_476310.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 418 tctccgcgttggtgacaaccctatgcaccaggctcttgaaaaacccattgctcaaaatct 477
           |||| ||||| || || |||||||||||| ||||||| || |||||||||||||  ||||
Sbjct: 748 tctcggcgttcgtcaccaccctatgcaccgggctctttaacaacccattgctcattatct 689

                
Query: 478 ccatt 482
           |||||
Sbjct: 688 ccatt 684
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 418     tctccgcgttggtgacaaccctatgcaccaggctcttgaaaaacccattgctca 471
               |||| ||||| || || |||||||||||| ||||||| || |||||||||||||
Sbjct: 3909145 tctcggcgttcgtcaccaccctatgcaccgggctctttaacaacccattgctca 3909092



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 418     tctccgcgttggtgacaaccctatgcaccaggctcttgaaaaacccattgctca 471
               |||| ||||| || || |||||||||||| ||||||| || |||||||||||||
Sbjct: 3859266 tctcggcgttcgtcaccaccctatgcaccgggctctttaacaacccattgctca 3859213



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 434     aaccctatgcaccaggctcttgaaaaacccattgctca 471
               |||||||||||||  |||||| |||| |||||||||||
Sbjct: 3902973 aaccctatgcaccgagctcttaaaaatcccattgctca 3902936



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 434     aaccctatgcaccaggctcttgaaaaacccattgctca 471
               |||||||||||||  |||||| |||| |||||||||||
Sbjct: 3891150 aaccctatgcaccgagctcttaaaaatcccattgctca 3891113



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 434     aaccctatgcaccaggctcttgaaaaacccattgctca 471
               |||||||||||||  |||||| |||| |||||||||||
Sbjct: 3853094 aaccctatgcaccgagctcttaaaaatcccattgctca 3853057
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 418   tctccgcgttggtgacaaccctatgcaccaggctcttgaaaaacccattgctca 471
             |||| ||||| || || |||||||||||| ||||||| || |||||||||||||
Sbjct: 15021 tctcggcgttcgtcaccaccctatgcaccgggctctttaacaacccattgctca 14968



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 434  aaccctatgcaccaggctcttgaaaaacccattgctca 471
            |||||||||||||  |||||| |||| |||||||||||
Sbjct: 8849 aaccctatgcaccgagctcttaaaaatcccattgctca 8812
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                    
Query: 418    tctccgcgttggtgacaaccctatgcaccaggctcttgaaaaacccattgctca 471
              |||| ||||| || || |||||||||||| ||||||| || |||||||||||||
Sbjct: 117220 tctcggcgttcgtcaccaccctatgcaccgggctctttaacaacccattgctca 117167



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 434    aaccctatgcaccaggctcttgaaaaacccattgctca 471
              |||||||||||||  |||||| |||| |||||||||||
Sbjct: 149104 aaccctatgcaccgagctcttaaaaatcccattgctca 149067



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 434    aaccctatgcaccaggctcttgaaaaacccattgctca 471
              |||||||||||||  |||||| |||| |||||||||||
Sbjct: 111048 aaccctatgcaccgagctcttaaaaatcccattgctca 111011
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>ref|NM_185701.1| Oryza sativa (japonica cultivar-group), Ozsa8052 predicted mRNA
          Length = 1050

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 434 aaccctatgcaccaggctcttgaaaaacccattgctcaaaatctccat 481
           |||||||||||||  |||||| |||| |||||||||||  ||||||||
Sbjct: 849 aaccctatgcaccgagctcttaaaaatcccattgctcattatctccat 802
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>ref|NM_185691.1| Oryza sativa (japonica cultivar-group), Ozsa8042 predicted mRNA
          Length = 1050

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 434 aaccctatgcaccaggctcttgaaaaacccattgctcaaaatctccat 481
           |||||||||||||  |||||| |||| |||||||||||  ||||||||
Sbjct: 849 aaccctatgcaccgagctcttaaaaatcccattgctcattatctccat 802
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>ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA
          Length = 12715

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 447  aggctcttgaaaaacccattgct 469
            |||||||||||||||||||||||
Sbjct: 7850 aggctcttgaaaaacccattgct 7872
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>gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, complete sequence
          Length = 155807

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 447   aggctcttgaaaaacccattgct 469
             |||||||||||||||||||||||
Sbjct: 34891 aggctcttgaaaaacccattgct 34913
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>gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, complete sequence
          Length = 186783

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 447   aggctcttgaaaaacccattgct 469
             |||||||||||||||||||||||
Sbjct: 21638 aggctcttgaaaaacccattgct 21616
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>gb|BC036911.1| Homo sapiens KIAA1632, mRNA (cDNA clone IMAGE:5139756), complete cds
          Length = 3519

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 447  aggctcttgaaaaacccattgct 469
            |||||||||||||||||||||||
Sbjct: 1536 aggctcttgaaaaacccattgct 1558
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>gb|BC003695.1| Homo sapiens KIAA1632, mRNA (cDNA clone IMAGE:3456134), partial cds
          Length = 3407

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 447  aggctcttgaaaaacccattgct 469
            |||||||||||||||||||||||
Sbjct: 1529 aggctcttgaaaaacccattgct 1551
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>emb|AL583915.1|HSM802938 Homo sapiens mRNA; cDNA DKFZp667P2311 (from clone DKFZp667P2311)
          Length = 2758

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 447 aggctcttgaaaaacccattgct 469
           |||||||||||||||||||||||
Sbjct: 859 aggctcttgaaaaacccattgct 881
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>emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chromosome 11, complete
             sequence
          Length = 155196

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 60    agttttatattagggtttaatg 81
             ||||||||||||||||||||||
Sbjct: 54624 agttttatattagggtttaatg 54603
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>gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromosome unknown, complete
             sequence
          Length = 194387

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 462   ccattgctcaaaatctccatta 483
             ||||||||||||||||||||||
Sbjct: 42770 ccattgctcaaaatctccatta 42749
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>gb|AC010846.13| Drosophila melanogaster clone BACR13G13, complete sequence
          Length = 192540

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     tccgtatgttgcccacatcgg 56
              |||||||||||||||||||||
Sbjct: 159801 tccgtatgttgcccacatcgg 159781
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>gb|AC133123.3| Homo sapiens 3 BAC RP11-441E2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114080

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 59281 acaaaaatttgggaaataggtaaaa 59305
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>gb|AC140112.3| Homo sapiens BAC clone RP11-1278I4 from UL, complete sequence
          Length = 216658

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 33363 acaaaaatttgggaaataggtaaaa 33339
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>emb|AL359181.28| Human DNA sequence from clone RP11-392N11 on chromosome 9 Contains the 3'
              end of the PHF2 gene for PHD finger protein 2 (GRC5,
              KIAA0662), complete sequence
          Length = 165415

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 125    acaaaaatctgggaaataggtaaaa 149
              |||||||| ||||||||||||||||
Sbjct: 137509 acaaaaatttgggaaataggtaaaa 137485
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>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence
          Length = 191144

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 28926 acaaaaatttgggaaataggtaaaa 28950
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>gb|AC008813.6| Homo sapiens chromosome 19 clone CTD-2102P23, complete sequence
          Length = 162914

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 125    acaaaaatctgggaaataggtaaaa 149
              |||||||| ||||||||||||||||
Sbjct: 110749 acaaaaatttgggaaataggtaaaa 110773
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>gb|AC148939.8| Pan troglodytes BAC clone CH251-51M11 from chromosome 7, complete
             sequence
          Length = 183313

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 70525 acaaaaatttgggaaataggtaaaa 70549
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>dbj|AK131448.1| Homo sapiens cDNA FLJ16592 fis, clone TESTI4001984
          Length = 3944

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 125  acaaaaatctgggaaataggtaaaa 149
            |||||||| ||||||||||||||||
Sbjct: 2648 acaaaaatttgggaaataggtaaaa 2672
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>gb|AC114954.2| Homo sapiens chromosome 5 clone RP11-103A10, complete sequence
          Length = 157980

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 125    acaaaaatctgggaaataggtaaaa 149
              |||||||| ||||||||||||||||
Sbjct: 105144 acaaaaatttgggaaataggtaaaa 105120
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>ref|NM_167518.1| Drosophila melanogaster Traf3 CG4394-RB, transcript variant B
           (Traf3), mRNA
          Length = 1809

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tccgtatgttgcccacatcgg 56
           |||||||||||||||||||||
Sbjct: 340 tccgtatgttgcccacatcgg 320
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>ref|NM_167517.1| Drosophila melanogaster Traf3 CG4394-RA, transcript variant A
           (Traf3), mRNA
          Length = 2249

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tccgtatgttgcccacatcgg 56
           |||||||||||||||||||||
Sbjct: 780 tccgtatgttgcccacatcgg 760
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>ref|NM_132898.2| Drosophila melanogaster Traf3 CG4394-RC, transcript variant C
           (Traf3), mRNA
          Length = 2337

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tccgtatgttgcccacatcgg 56
           |||||||||||||||||||||
Sbjct: 868 tccgtatgttgcccacatcgg 848
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>gb|AY052057.1| Drosophila melanogaster LP08566 full length cDNA
          Length = 2352

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tccgtatgttgcccacatcgg 56
           |||||||||||||||||||||
Sbjct: 868 tccgtatgttgcccacatcgg 848
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>gb|AC010920.11|AC010920 Drosophila melanogaster, chromosome X, region 14C-14D, BAC clone
             BACR47D09, complete sequence
          Length = 166935

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    tccgtatgttgcccacatcgg 56
             |||||||||||||||||||||
Sbjct: 63847 tccgtatgttgcccacatcgg 63827
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>gb|AC150749.3| Pan troglodytes BAC clone CH251-553P23 from chromosome 7, complete
              sequence
          Length = 237211

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 125    acaaaaatctgggaaataggtaaaa 149
              |||||||| ||||||||||||||||
Sbjct: 105323 acaaaaatttgggaaataggtaaaa 105299
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>emb|BX546492.4| Human DNA sequence from clone RP11-441E2 on chromosome 22, complete
             sequence
          Length = 165333

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 59282 acaaaaatttgggaaataggtaaaa 59306
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>dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15I22
          Length = 59648

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 118  tacacacacaaaaatctggga 138
            |||||||||||||||||||||
Sbjct: 6042 tacacacacaaaaatctggga 6022
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>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete
             sequence
          Length = 304712

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    tccgtatgttgcccacatcgg 56
             |||||||||||||||||||||
Sbjct: 83129 tccgtatgttgcccacatcgg 83109
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>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence
          Length = 205289

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   acattttacatgaggagtac 120
             ||||||||||||||||||||
Sbjct: 86957 acattttacatgaggagtac 86976
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>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence
          Length = 210819

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 126   caaaaatctgggaaataggtaaaa 149
             ||||||||||||||| ||||||||
Sbjct: 28379 caaaaatctgggaaagaggtaaaa 28402
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>gb|AY569234.1| Adelotettix gigas 16S ribosomal RNA gene, partial sequence;
           mitochondrial
          Length = 509

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 62  ttttatattagggtttaatg 81
           ||||||||||||||||||||
Sbjct: 257 ttttatattagggtttaatg 276
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>gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, complete sequence
          Length = 217989

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 126   caaaaatctgggaaataggtaaaa 149
             ||||||||||||||| ||||||||
Sbjct: 10578 caaaaatctgggaaagaggtaaaa 10555
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>gb|AF203743.1| Eonycteris spelaea 16S ribosomal RNA gene, complete sequence;
           mitochondrial gene for mitochondrial product
          Length = 1572

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 catgtagtcgttgagcttga 312
           ||||||||||||||||||||
Sbjct: 554 catgtagtcgttgagcttga 535
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>emb|AL929495.21| Zebrafish DNA sequence from clone CH211-136M16 in linkage group 12,
             complete sequence
          Length = 157568

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 119   acacacacaaaaatctgggaaataggtaaaaa 150
             ||||||||||||| |||| ||||| |||||||
Sbjct: 23475 acacacacaaaaaactggaaaatacgtaaaaa 23444
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>gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, complete sequence
          Length = 206693

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   gaggagtacacacacaaaaa 131
             ||||||||||||||||||||
Sbjct: 77623 gaggagtacacacacaaaaa 77642
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 432      acaaccctatgcaccaggctcttgaaaaacccattgctca 471
                ||||||||||||||| ||||  |||| | |||||||||||
Sbjct: 12789500 acaaccctatgcaccgggcttctgaacatcccattgctca 12789461
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>gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, complete sequence
          Length = 213942

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    tacatgaggagtacacacacaaaa 130
              ||||||| ||||||||||||||||
Sbjct: 175815 tacatgaagagtacacacacaaaa 175792
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>dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0086N11
          Length = 146185

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 432    acaaccctatgcaccaggctcttgaaaaacccattgctca 471
              ||||||||||||||| ||||  |||| | |||||||||||
Sbjct: 137777 acaaccctatgcaccgggcttctgaacatcccattgctca 137738
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>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0073A18
          Length = 176755

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 432  acaaccctatgcaccaggctcttgaaaaacccattgctca 471
            ||||||||||||||| ||||  |||| | |||||||||||
Sbjct: 8982 acaaccctatgcaccgggcttctgaacatcccattgctca 8943
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>dbj|AK111474.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-F04, full
           insert sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 432 acaaccctatgcaccaggctcttgaaaaacccattgctca 471
           ||||||||||||||| ||||  |||| | |||||||||||
Sbjct: 914 acaaccctatgcaccgggcttctgaacatcccattgctca 875
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>emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, locus ECVHL88
          Length = 595

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 tacatgaggagtacacacac 126
           ||||||||||||||||||||
Sbjct: 317 tacatgaggagtacacacac 298
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>emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chromosome X, complete
              sequence
          Length = 148507

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    agtgtcatggtatttttcca 294
              ||||||||||||||||||||
Sbjct: 139391 agtgtcatggtatttttcca 139410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,820,997
Number of Sequences: 3902068
Number of extensions: 4820997
Number of successful extensions: 92828
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92719
Number of HSP's gapped (non-prelim): 109
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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