ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S26A1_MOUSE (P58735) Sulfate anion transporter 1 (SAT-1) (Solute... 31 0.75
2S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute c... 30 2.2
3RPOA_NEPOL (Q9TL28) DNA-directed RNA polymerase alpha chain (EC ... 29 2.8
4PAFA2_HUMAN (Q99487) Platelet-activating factor acetylhydrolase ... 29 3.7
5POLG_TMEVG (P08545) Genome polyprotein [Contains: Coat protein V... 29 3.7
6POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein V... 29 3.7
7S26A1_HUMAN (Q9H2B4) Sulfate anion transporter 1 (SAT-1) (Solute... 28 6.3
8RECK_MOUSE (Q9Z0J1) Reversion-inducing cysteine-rich protein wit... 28 8.3
9RECK_HUMAN (O95980) Reversion-inducing cysteine-rich protein wit... 28 8.3
10CRTC_DICDI (Q23858) Calreticulin precursor 28 8.3

>S26A1_MOUSE (P58735) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1)
          Length = 704

 Score = 31.2 bits (69), Expect = 0.75
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 32  GRIHRFYTSKLTGSIVTGFTAPQTDGP 112
           G++H  + S++ G+I TGF APQ   P
Sbjct: 314 GQLHTRFDSRVAGNIPTGFVAPQVPDP 340



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>S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1) (Canalicular sulfate transporter)
           (Sulfate/carbonate antiporter)
          Length = 703

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 32  GRIHRFYTSKLTGSIVTGFTAPQTDGP 112
           G++H  + S + G+I TGF APQ   P
Sbjct: 313 GQLHTRFGSSVAGNIPTGFVAPQIPDP 339



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>RPOA_NEPOL (Q9TL28) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 495

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 50  YTSKLTGSIVTGFTAPQTDGPIDPENGMDSFIQSKLK 160
           Y  + T  +  GFT P    P++PEN   S  +SK K
Sbjct: 153 YRLRRTSLVPPGFTLPPPRDPLEPENDSKSETKSKSK 189



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>PAFA2_HUMAN (Q99487) Platelet-activating factor acetylhydrolase 2, cytoplasmic|
           (EC 3.1.1.47) (Serine-dependent phospholipase A2)
           (HSD-PLA2)
          Length = 392

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 32  GRIHRFYT--SKLTGSIVTGFTAPQTDGPIDPENGMDSFIQSKL 157
           G +HR  T  + +TG+++  F + +T G +DP  G +  +++ L
Sbjct: 311 GSVHRSQTDFAFVTGNLIGKFFSTETRGSLDPYEGQEVMVRAML 354



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>POLG_TMEVG (P08545) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2303

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 223  PPPARPSVWSIAPPLASSHESFKFALN 143
            PPPA P+V     PL  ++E F FA N
Sbjct: 1180 PPPACPNVMQPQGPLREANEGFTFAKN 1206



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>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2303

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 223  PPPARPSVWSIAPPLASSHESFKFALN 143
            PPPA P+V     PL  ++E F FA N
Sbjct: 1180 PPPACPNVMQPQGPLREANEGFTFAKN 1206



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>S26A1_HUMAN (Q9H2B4) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1)
          Length = 701

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 32  GRIHRFYTSKLTGSIVTGFTAPQTDGP 112
           G++H+ + S + G I TGF  PQ   P
Sbjct: 309 GQLHKRFGSSVAGDIPTGFMPPQVPEP 335



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>RECK_MOUSE (Q9Z0J1) Reversion-inducing cysteine-rich protein with Kazal motifs|
           precursor (mRECK)
          Length = 971

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 103 SLWCCETCDDRPCQFAC 53
           SL+CC+  +D  CQ AC
Sbjct: 213 SLYCCDRAEDHACQNAC 229



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>RECK_HUMAN (O95980) Reversion-inducing cysteine-rich protein with Kazal motifs|
           precursor (hRECK) (Suppressor of tumorigenicity 15)
           (ST15)
          Length = 971

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 103 SLWCCETCDDRPCQFAC 53
           SL+CC+  +D  CQ AC
Sbjct: 213 SLYCCDRAEDHACQNAC 229



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>CRTC_DICDI (Q23858) Calreticulin precursor|
          Length = 424

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -2

Query: 201 CGRSRLPLLPVMSRLSLL*MNESIPFSGSIGPSVCGAVKPVTI 73
           CG S + LLP  S+L     +    +S   GP VCGA K V +
Sbjct: 105 CGGSYIKLLP--SKLDQSAFDGESEYSIMFGPDVCGASKRVHV 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,929,508
Number of Sequences: 219361
Number of extensions: 581362
Number of successful extensions: 1738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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