ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187725.1| Oryza sativa (japonica cultivar-group), predic... 226 5e-56
2dbj|AK106618.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 5e-56
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
4dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
5dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
6dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
7gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
9gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19,... 52 0.001
10dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 48 0.023
11gb|AC003044.1| Homo sapiens PAC clone RP5-1055C4 from 7, complet... 44 0.36
12emb|AL591400.8| Human DNA sequence from clone RP11-65C6 on chrom... 44 0.36
13gb|AC092994.4| Homo sapiens 3 BAC RP11-656A15 (Roswell Park Canc... 44 0.36
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
15emb|AL606997.3|OSJN00115 Oryza sativa genomic DNA, chromosome 4,... 44 0.36
16gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete... 42 1.4
17gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.7
18gb|AC133006.6| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
19gb|AC129608.3| Mus musculus BAC clone RP23-193A2 from chromosome... 40 5.7
20gb|AC036146.10| Mus musculus chromosome 5, clone RP23-294A15, co... 40 5.7
21gb|AC140294.3| Mus musculus BAC clone RP23-359G16 from chromosom... 40 5.7
22gb|AC129322.3| Mus musculus BAC clone RP23-220F4 from chromosome... 40 5.7
23emb|AL772392.4| Human DNA sequence from clone RP11-450P7 on chro... 40 5.7
24gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromo... 40 5.7
25emb|AL138963.20| Human DNA sequence from clone RP11-290D2 on chr... 40 5.7
26gb|AC161529.4| Mus musculus chromosome 5, clone RP24-316L21, com... 40 5.7
27emb|AL032684.1|SPBP8B7 S.pombe chromosome II p1 p8B7 40 5.7
28emb|CR931729.2| Medicago truncatula chromosome 5 clone mte1-82a1... 40 5.7
29gb|AC087672.7| Homo sapiens chromosome 8, clone RP11-6I2, comple... 40 5.7
30gb|AC104165.2| Homo sapiens chromosome 3 clone RP11-681O4, compl... 40 5.7
31dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 5.7
32emb|AL954137.18| Zebrafish DNA sequence from clone CH211-222L21 ... 40 5.7
33gb|AE005821.1| Caulobacter crescentus CB15 section 147 of 359 of... 40 5.7
34gb|AC022868.10| Homo sapiens chromosome 8, clone RP11-367E12, co... 40 5.7
35dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 5.7
36ref|XM_684099.1| PREDICTED: Danio rerio similar to mel transform... 40 5.7
37gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromo... 40 5.7
38ref|NM_001022434.1| Schizosaccharomyces pombe 972h- hypothetical... 40 5.7
39dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
41dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
42dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
43dbj|AP004855.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
44dbj|AK174873.1| Ciona intestinalis cDNA, clone:citb012b22, full ... 40 5.7
45emb|Y00466.1|SPRPL40C Yeast (S. pombe) mRNA for ribosomal protei... 40 5.7
46emb|AL161664.8|CNS01RH8 Human chromosome 14 DNA sequence BAC C-2... 40 5.7
47emb|CR926365.2| Xenopus tropicalis finished cDNA, clone TGas064k12 40 5.7
48gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.7
49gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
50gb|AC127589.4| Mus musculus BAC clone RP23-134K6 from 5, complet... 40 5.7
51emb|Z81072.1|CEF30A10 Caenorhabditis elegans Cosmid F30A10, comp... 40 5.7
52emb|AL358341.3|CNS05TEC Human chromosome 14 DNA sequence BAC R-1... 40 5.7
53gb|M33138.1|YSPRPA2 S.pombe ribosomal protein A2 (rpa2+) gene, c... 40 5.7 
>ref|NM_187725.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 894

 Score =  226 bits (114), Expect = 5e-56
 Identities = 150/162 (92%)
 Strand = Plus / Minus

                                                                       
Query: 254 cgccactgcctgcgcccacaccttgagcctcgccttcacgtccttgggatcgtcaccggg 313
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 864 cgccaccgcctgcgcccacaccttgagcctcgccttcacgtccttggggtcgtcaccggg 805

                                                                       
Query: 314 gctggagatgcgccagctgccggaggccggggagttgccgccgctgctggcggtgtcgat 373
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| 
Sbjct: 804 gctggagatgcgccagctgccggacgccggcgagttgccgccgctgctggcggtgtcgac 745

                                                     
Query: 374 gttgggggccgcgtaggaggggatctccactgtccagtcgca 415
           |  || |  ||||||| ||||||||||||| |||||||||||
Sbjct: 744 gccggagagcgcgtagcaggggatctccacggtccagtcgca 703
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>dbj|AK106618.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-A09, full
           insert sequence
          Length = 1517

 Score =  226 bits (114), Expect = 5e-56
 Identities = 150/162 (92%)
 Strand = Plus / Minus

                                                                       
Query: 254 cgccactgcctgcgcccacaccttgagcctcgccttcacgtccttgggatcgtcaccggg 313
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 956 cgccaccgcctgcgcccacaccttgagcctcgccttcacgtccttggggtcgtcaccggg 897

                                                                       
Query: 314 gctggagatgcgccagctgccggaggccggggagttgccgccgctgctggcggtgtcgat 373
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| 
Sbjct: 896 gctggagatgcgccagctgccggacgccggcgagttgccgccgctgctggcggtgtcgac 837

                                                     
Query: 374 gttgggggccgcgtaggaggggatctccactgtccagtcgca 415
           |  || |  ||||||| ||||||||||||| |||||||||||
Sbjct: 836 gccggagagcgcgtagcaggggatctccacggtccagtcgca 795
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  135 bits (68), Expect = 1e-28
 Identities = 98/108 (90%)
 Strand = Plus / Plus

                                                                            
Query: 308      accggggctggagatgcgccagctgccggaggccggggagttgccgccgctgctggcggt 367
                |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 10200647 accggggctggagatgcgccagctgccggacgccggcgagttgccgccgctgctggcggt 10200706

                                                                
Query: 368      gtcgatgttgggggccgcgtaggaggggatctccactgtccagtcgca 415
                ||||| |  || |  ||||||| ||||||||||||| |||||||||||
Sbjct: 10200707 gtcgacgccggagagcgcgtagcaggggatctccacggtccagtcgca 10200754



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 55/57 (96%)
 Strand = Plus / Plus

                                                                         
Query: 254      cgccactgcctgcgcccacaccttgagcctcgccttcacgtccttgggatcgtcacc 310
                |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10199115 cgccaccgcctgcgcccacaccttgagcctcgccttcacgtccttggggtcgtcacc 10199171
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>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0581F09
          Length = 154248

 Score =  135 bits (68), Expect = 1e-28
 Identities = 98/108 (90%)
 Strand = Plus / Plus

                                                                          
Query: 308    accggggctggagatgcgccagctgccggaggccggggagttgccgccgctgctggcggt 367
              |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 148116 accggggctggagatgcgccagctgccggacgccggcgagttgccgccgctgctggcggt 148175

                                                              
Query: 368    gtcgatgttgggggccgcgtaggaggggatctccactgtccagtcgca 415
              ||||| |  || |  ||||||| ||||||||||||| |||||||||||
Sbjct: 148176 gtcgacgccggagagcgcgtagcaggggatctccacggtccagtcgca 148223



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 55/57 (96%)
 Strand = Plus / Plus

                                                                       
Query: 254    cgccactgcctgcgcccacaccttgagcctcgccttcacgtccttgggatcgtcacc 310
              |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 146584 cgccaccgcctgcgcccacaccttgagcctcgccttcacgtccttggggtcgtcacc 146640
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>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0498A12
          Length = 159749

 Score =  135 bits (68), Expect = 1e-28
 Identities = 98/108 (90%)
 Strand = Plus / Plus

                                                                         
Query: 308   accggggctggagatgcgccagctgccggaggccggggagttgccgccgctgctggcggt 367
             |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 65961 accggggctggagatgcgccagctgccggacgccggcgagttgccgccgctgctggcggt 66020

                                                             
Query: 368   gtcgatgttgggggccgcgtaggaggggatctccactgtccagtcgca 415
             ||||| |  || |  ||||||| ||||||||||||| |||||||||||
Sbjct: 66021 gtcgacgccggagagcgcgtagcaggggatctccacggtccagtcgca 66068



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 55/57 (96%)
 Strand = Plus / Plus

                                                                      
Query: 254   cgccactgcctgcgcccacaccttgagcctcgccttcacgtccttgggatcgtcacc 310
             |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 64429 cgccaccgcctgcgcccacaccttgagcctcgccttcacgtccttggggtcgtcacc 64485
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>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0004B13
          Length = 142268

 Score =  135 bits (68), Expect = 1e-28
 Identities = 98/108 (90%)
 Strand = Plus / Plus

                                                                          
Query: 308    accggggctggagatgcgccagctgccggaggccggggagttgccgccgctgctggcggt 367
              |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 125246 accggggctggagatgcgccagctgccggacgccggcgagttgccgccgctgctggcggt 125305

                                                              
Query: 368    gtcgatgttgggggccgcgtaggaggggatctccactgtccagtcgca 415
              ||||| |  || |  ||||||| ||||||||||||| |||||||||||
Sbjct: 125306 gtcgacgccggagagcgcgtagcaggggatctccacggtccagtcgca 125353



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 55/57 (96%)
 Strand = Plus / Plus

                                                                       
Query: 254    cgccactgcctgcgcccacaccttgagcctcgccttcacgtccttgggatcgtcacc 310
              |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 123714 cgccaccgcctgcgcccacaccttgagcctcgccttcacgtccttggggtcgtcacc 123770
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>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0111O13, complete sequence
          Length = 126332

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                    
Query: 254   cgccactgcctgcgcccacaccttgagcctcgccttcac 292
             |||||| ||||||||||||||||||||||||||||||||
Sbjct: 99637 cgccaccgcctgcgcccacaccttgagcctcgccttcac 99599
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                      
Query: 254     cgccactgcctgcgcccacaccttgagcctcgccttcac 292
               |||||| ||||||||||||||||||||||||||||||||
Sbjct: 2267206 cgccaccgcctgcgcccacaccttgagcctcgccttcac 2267168
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>gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19, complete sequence
          Length = 108651

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 267   gcccacaccttgagcctcgccttcacgtccttgggatcgtcaccggggctggagatgcgc 326
             |||||||||||||| |||||||| || ||||| || || ||||| || || |||||||||
Sbjct: 64338 gcccacaccttgagtctcgccttaacctccttcgggtcatcacctggactcgagatgcgc 64279

               
Query: 327   ca 328
             ||
Sbjct: 64278 ca 64277
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 315     ctggagatgcgccagctgccggag 338
               ||||||||||||||||||||||||
Sbjct: 8750897 ctggagatgcgccagctgccggag 8750920
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>gb|AC003044.1| Homo sapiens PAC clone RP5-1055C4 from 7, complete sequence
          Length = 81231

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 38  aaagtgttgtttttctgaaaaa 59
           ||||||||||||||||||||||
Sbjct: 739 aaagtgttgtttttctgaaaaa 760
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>emb|AL591400.8| Human DNA sequence from clone RP11-65C6 on chromosome 6 Contains 40s
             ribosomal protein S3a (v-fos transformation effector
             protein 1) (RPS3A)(FTE1) pseudogene, complete sequence
          Length = 101739

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 185   actgatcataactgatcataaa 206
             ||||||||||||||||||||||
Sbjct: 91244 actgatcataactgatcataaa 91223
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>gb|AC092994.4| Homo sapiens 3 BAC RP11-656A15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159445

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 40    agtgttgtttttctgaaaaagt 61
             ||||||||||||||||||||||
Sbjct: 74425 agtgttgtttttctgaaaaagt 74404
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 54      gaaaaagtatgtgcaatgacag 75
               ||||||||||||||||||||||
Sbjct: 6172072 gaaaaagtatgtgcaatgacag 6172093
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>emb|AL606997.3|OSJN00115 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0059D20,
             complete sequence
          Length = 147108

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 54    gaaaaagtatgtgcaatgacag 75
             ||||||||||||||||||||||
Sbjct: 67857 gaaaaagtatgtgcaatgacag 67878
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>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence
          Length = 452156

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 356    gctgctggcggtgtcgatgtt 376
              |||||||||||||||||||||
Sbjct: 266101 gctgctggcggtgtcgatgtt 266081
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 358     tgctggcggtgtcgatgttg 377
               ||||||||||||||||||||
Sbjct: 2805626 tgctggcggtgtcgatgttg 2805645
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>gb|AC133006.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0072N24 map C61883S, complete sequence
          Length = 163337

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 261   gcctgcgcccacaccttgagcctcgccttcac 292
             |||||||||||   ||||||||||||||||||
Sbjct: 62009 gcctgcgcccaatacttgagcctcgccttcac 61978
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>gb|AC129608.3| Mus musculus BAC clone RP23-193A2 from chromosome 5, complete sequence
          Length = 240180

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    ttgtttttctgaaaaagtat 63
             ||||||||||||||||||||
Sbjct: 80269 ttgtttttctgaaaaagtat 80250
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>gb|AC036146.10| Mus musculus chromosome 5, clone RP23-294A15, complete sequence
          Length = 196168

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    ttgtttttctgaaaaagtat 63
             ||||||||||||||||||||
Sbjct: 51407 ttgtttttctgaaaaagtat 51426
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>gb|AC140294.3| Mus musculus BAC clone RP23-359G16 from chromosome 19, complete
             sequence
          Length = 190551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   tcataactgatcataaatta 209
             ||||||||||||||||||||
Sbjct: 41165 tcataactgatcataaatta 41146
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>gb|AC129322.3| Mus musculus BAC clone RP23-220F4 from chromosome 19, complete
            sequence
          Length = 182093

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 190  tcataactgatcataaatta 209
            ||||||||||||||||||||
Sbjct: 5559 tcataactgatcataaatta 5578
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>emb|AL772392.4| Human DNA sequence from clone RP11-450P7 on chromosome X Contains the
             3' end of the CNK2 gene for connector enhancer of KSR2
             (KIAA0902), gene FLJ34960, 3' end of the SMPX gene for
             X-linked small muscle protein and a CpG island, complete
             sequence
          Length = 124186

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   taactgatcataaattatca 212
             ||||||||||||||||||||
Sbjct: 42462 taactgatcataaattatca 42443
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>gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromosome unknown, complete
             sequence
          Length = 169508

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   aactgatcataactgatcat 203
             ||||||||||||||||||||
Sbjct: 9981  aactgatcataactgatcat 10000
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>emb|AL138963.20| Human DNA sequence from clone RP11-290D2 on chromosome 13 Contains the
             3' end of the GTF2F2 gene for general transcription factor
             IIF, polypeptide 2, 30kDa, 3 novel genes, the TPT1 gene
             for tumor protein, translationally-controlled 1 and a CpG
             island, complete sequence
          Length = 161297

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   gaaaattgtggtaatttaca 163
             ||||||||||||||||||||
Sbjct: 24162 gaaaattgtggtaatttaca 24181
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>gb|AC161529.4| Mus musculus chromosome 5, clone RP24-316L21, complete sequence
          Length = 184502

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     ttgtttttctgaaaaagtat 63
              ||||||||||||||||||||
Sbjct: 162371 ttgtttttctgaaaaagtat 162352
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>emb|AL032684.1|SPBP8B7 S.pombe chromosome II p1 p8B7
          Length = 71000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   tgccgccgctgctggcggtg 368
             ||||||||||||||||||||
Sbjct: 10885 tgccgccgctgctggcggtg 10904
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>emb|CR931729.2| Medicago truncatula chromosome 5 clone mte1-82a1, COMPLETE SEQUENCE
          Length = 94751

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    ttgtttttctgaaaaagtatgtgc 67
             |||||||||||||||||| |||||
Sbjct: 45045 ttgtttttctgaaaaagtgtgtgc 45022
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>gb|AC087672.7| Homo sapiens chromosome 8, clone RP11-6I2, complete sequence
          Length = 152061

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   tgtgcaatgacagtgtgcaa 82
            ||||||||||||||||||||
Sbjct: 8328 tgtgcaatgacagtgtgcaa 8309
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>gb|AC104165.2| Homo sapiens chromosome 3 clone RP11-681O4, complete sequence
          Length = 200956

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    ttctgaaaaagtatgtgcaa 69
             ||||||||||||||||||||
Sbjct: 49406 ttctgaaaaagtatgtgcaa 49425
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 331     tgccggaggccggggagttgccgc 354
               ||||||||||||||||||| ||||
Sbjct: 4107441 tgccggaggccggggagtttccgc 4107464
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>emb|AL954137.18| Zebrafish DNA sequence from clone CH211-222L21 in linkage group 11,
              complete sequence
          Length = 222163

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     gtgttgtttttctgaaaaag 60
              ||||||||||||||||||||
Sbjct: 125213 gtgttgtttttctgaaaaag 125194
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>gb|AE005821.1| Caulobacter crescentus CB15 section 147 of 359 of the complete genome
          Length = 10023

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  gttgccgccgctgctggcgg 366
            ||||||||||||||||||||
Sbjct: 7465 gttgccgccgctgctggcgg 7484
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>gb|AC022868.10| Homo sapiens chromosome 8, clone RP11-367E12, complete sequence
          Length = 166018

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tgtgcaatgacagtgtgcaa 82
             ||||||||||||||||||||
Sbjct: 15620 tgtgcaatgacagtgtgcaa 15639
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 364     cggtgtcgatgttgggggcc 383
               ||||||||||||||||||||
Sbjct: 1778801 cggtgtcgatgttgggggcc 1778782
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>ref|XM_684099.1| PREDICTED: Danio rerio similar to mel transforming oncogene-like 1
            (LOC560703), mRNA
          Length = 2519

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   gtgttgtttttctgaaaaag 60
            ||||||||||||||||||||
Sbjct: 2454 gtgttgtttttctgaaaaag 2473
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>gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromosome unknown, complete
              sequence
          Length = 218767

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    aactgatcataactgatcat 203
              ||||||||||||||||||||
Sbjct: 186728 aactgatcataactgatcat 186709
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>ref|NM_001022434.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBP8B7.06),
           partial mRNA
          Length = 333

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 349 tgccgccgctgctggcggtg 368
           ||||||||||||||||||||
Sbjct: 225 tgccgccgctgctggcggtg 244
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 261     gcctgcgcccacaccttgagcctcgccttcac 292
               |||||||||||   ||||||||||||||||||
Sbjct: 9968228 gcctgcgcccaatacttgagcctcgccttcac 9968197
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 344     ggagttgccgccgctgctgg 363
               ||||||||||||||||||||
Sbjct: 1816237 ggagttgccgccgctgctgg 1816218
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 352      cgccgctgctggcggtgtcg 371
                ||||||||||||||||||||
Sbjct: 14637434 cgccgctgctggcggtgtcg 14637453
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>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0009H02
          Length = 155388

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ggagttgccgccgctgctgg 363
             ||||||||||||||||||||
Sbjct: 98598 ggagttgccgccgctgctgg 98579
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>dbj|AP004855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1538_H05
          Length = 132282

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   cgccgctgctggcggtgtcg 371
             ||||||||||||||||||||
Sbjct: 28232 cgccgctgctggcggtgtcg 28251
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>dbj|AK174873.1| Ciona intestinalis cDNA, clone:citb012b22, full insert sequence
          Length = 1287

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 ggaaaattgtggtaatttac 162
           ||||||||||||||||||||
Sbjct: 808 ggaaaattgtggtaatttac 827
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>emb|Y00466.1|SPRPL40C Yeast (S. pombe) mRNA for ribosomal protein L40c
          Length = 406

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 349 tgccgccgctgctggcggtg 368
           ||||||||||||||||||||
Sbjct: 231 tgccgccgctgctggcggtg 250
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>emb|AL161664.8|CNS01RH8 Human chromosome 14 DNA sequence BAC C-2594L5 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171355

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    aggaaaggaaggaaaattgt 152
              ||||||||||||||||||||
Sbjct: 153451 aggaaaggaaggaaaattgt 153432
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>emb|CR926365.2| Xenopus tropicalis finished cDNA, clone TGas064k12
          Length = 2683

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  gggagttgccgccgctgctg 362
            ||||||||||||||||||||
Sbjct: 1285 gggagttgccgccgctgctg 1266
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     gttgccgccgctgctggcgg 366
               ||||||||||||||||||||
Sbjct: 1083047 gttgccgccgctgctggcgg 1083066
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 261      gcctgcgcccacaccttgagcctcgccttcac 292
                |||||||||||   ||||||||||||||||||
Sbjct: 10039925 gcctgcgcccaatacttgagcctcgccttcac 10039894
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>gb|AC127589.4| Mus musculus BAC clone RP23-134K6 from 5, complete sequence
          Length = 209121

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   gaggaaaggaaggaaaattgtggt 155
             ||||||||||||||||||| ||||
Sbjct: 96458 gaggaaaggaaggaaaattctggt 96481
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>emb|Z81072.1|CEF30A10 Caenorhabditis elegans Cosmid F30A10, complete sequence
          Length = 37170

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   tgttgtttttctgaaaaagt 61
            ||||||||||||||||||||
Sbjct: 7337 tgttgtttttctgaaaaagt 7318
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>emb|AL358341.3|CNS05TEC Human chromosome 14 DNA sequence BAC R-1126O17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 136905

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   aggaaaggaaggaaaattgt 152
             ||||||||||||||||||||
Sbjct: 39421 aggaaaggaaggaaaattgt 39402
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>gb|M33138.1|YSPRPA2 S.pombe ribosomal protein A2 (rpa2+) gene, complete cds
          Length = 800

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 349 tgccgccgctgctggcggtg 368
           ||||||||||||||||||||
Sbjct: 454 tgccgccgctgctggcggtg 473


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,953,811
Number of Sequences: 3902068
Number of extensions: 3953811
Number of successful extensions: 84565
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84112
Number of HSP's gapped (non-prelim): 447
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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