ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 gen... 42 1.7
2gb|AE005817.1| Caulobacter crescentus CB15 section 143 of 359 of... 42 1.7
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
5ref|XM_470972.1| Oryza sativa (japonica cultivar-group), predic... 40 6.7
6gb|DQ058416.1| Rhizobium etli strain 8C-3 plasmid clone REB02, p... 40 6.7
7ref|XM_602450.2| PREDICTED: Bos taurus similar to StAR-related l... 40 6.7
8gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 6.7
9gb|AC006377.3| Homo sapiens BAC clone RP11-450H7 from 7, complet... 40 6.7
10gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 6.7
11gb|AE014313.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 6.7
12gb|AC142309.1| Pan troglodytes BAC clone RP43-45E24 from 7, comp... 40 6.7
13emb|AL359751.12| Human DNA sequence from clone RP11-166E2 on chr... 40 6.7
14emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4,... 40 6.7
15gb|AC149874.2| Xenopus tropicalis clone CH216-146M19, complete s... 40 6.7
16gb|AE011825.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.7
17gb|AE012255.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.7
18gb|U80928.5|REU80928 Rhizobium etli strain CFN42 symbiotic plasm... 40 6.7
19gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.7
20gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete... 40 6.7
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
22gb|AC011236.8| Homo sapiens BAC clone RP11-312D1 from 2, complet... 40 6.7
23dbj|AK105914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
24dbj|AK071063.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
25gb|AF127374.1|AF127374 Streptomyces lavendulae LinA homolog, cyt... 40 6.7
26emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4,... 40 6.7

>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete
              sequence
          Length = 123292

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 133    aaactcagaaagattttgcat 153
              |||||||||||||||||||||
Sbjct: 112771 aaactcagaaagattttgcat 112791



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>gb|AE005817.1| Caulobacter crescentus CB15 section 143 of 359 of the complete genome
          Length = 14256

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 400   acgtggtggcctgcgagcgcggcgc 424
             ||||| |||||||||||||||||||
Sbjct: 12829 acgtgatggcctgcgagcgcggcgc 12853



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 133      aaactcagaaagattttgcat 153
                |||||||||||||||||||||
Sbjct: 18882270 aaactcagaaagattttgcat 18882250



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 133      aaactcagaaagattttgcat 153
                |||||||||||||||||||||
Sbjct: 18893524 aaactcagaaagattttgcat 18893504



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>ref|XM_470972.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1380

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 466  gatgatggagttgccgatcatccc 489
            |||||||||||||||| |||||||
Sbjct: 1218 gatgatggagttgccggtcatccc 1195



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>gb|DQ058416.1| Rhizobium etli strain 8C-3 plasmid clone REB02, partial sequence
          Length = 190912

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   ggtggcctgcgagcgcggcg 423
             ||||||||||||||||||||
Sbjct: 57960 ggtggcctgcgagcgcggcg 57979



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>ref|XM_602450.2| PREDICTED: Bos taurus similar to StAR-related lipid transfer protein
            9 (StARD9) (START domain-containing protein 9)
            (LOC524130), partial mRNA
          Length = 11958

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   ccttcttcagccaggagctg 84
            ||||||||||||||||||||
Sbjct: 3054 ccttcttcagccaggagctg 3073



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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 431     gccggggccatcgtcctccacctc 454
               |||||||||||| |||||||||||
Sbjct: 4711605 gccggggccatcatcctccacctc 4711628



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>gb|AC006377.3| Homo sapiens BAC clone RP11-450H7 from 7, complete sequence
          Length = 176463

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   cttccaggcctcttccttcc 189
             ||||||||||||||||||||
Sbjct: 22707 cttccaggcctcttccttcc 22688



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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 404     ggtggcctgcgagcgcggcgcggc 427
               ||||||| ||||||||||||||||
Sbjct: 2206248 ggtggccggcgagcgcggcgcggc 2206271



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>gb|AE014313.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 10
             of 11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   gggccatcgtcctccacctc 454
             ||||||||||||||||||||
Sbjct: 10264 gggccatcgtcctccacctc 10283



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>gb|AC142309.1| Pan troglodytes BAC clone RP43-45E24 from 7, complete sequence
          Length = 186055

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   cttccaggcctcttccttcc 189
             ||||||||||||||||||||
Sbjct: 72272 cttccaggcctcttccttcc 72291



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>emb|AL359751.12| Human DNA sequence from clone RP11-166E2 on chromosome 13 Contains the
             gene for LG30 and the DAOA gene for D-amino acid oxidase
             activator (LG72), complete sequence
          Length = 117068

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   gggccatcgtcctccacctc 454
             ||||||||||||||||||||
Sbjct: 77362 gggccatcgtcctccacctc 77381



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>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15,
              complete sequence
          Length = 144778

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 27     ctgacatacttagtacaccatgacacat 54
              ||||||||||| |||||||| |||||||
Sbjct: 123307 ctgacatactttgtacaccaggacacat 123280



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 466    gatgatggagttgccgatcatccc 489
              |||||||||||||||| |||||||
Sbjct: 122892 gatgatggagttgccggtcatccc 122869



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>gb|AC149874.2| Xenopus tropicalis clone CH216-146M19, complete sequence
          Length = 175117

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   accggcgtctgacagctggc 344
             ||||||||||||||||||||
Sbjct: 52622 accggcgtctgacagctggc 52603



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>gb|AE011825.1| Xanthomonas axonopodis pv. citri str. 306,  section 203 of 469 of the
            complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  gatggagttgccgatcatcc 488
            ||||||||||||||||||||
Sbjct: 1943 gatggagttgccgatcatcc 1962



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>gb|AE012255.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 163
            of 460 of the complete genome
          Length = 12201

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 411  tgcgagcgcggcgcggctgagccg 434
            ||||||||||||||||||| ||||
Sbjct: 3259 tgcgagcgcggcgcggctgcgccg 3236



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>gb|U80928.5|REU80928 Rhizobium etli strain CFN42 symbiotic plasmid p42d, complete sequence
          Length = 371254

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 404    ggtggcctgcgagcgcggcg 423
              ||||||||||||||||||||
Sbjct: 145633 ggtggcctgcgagcgcggcg 145614



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 411     tgcgagcgcggcgcggctgagccg 434
               ||||||||||||||||||| ||||
Sbjct: 3240130 tgcgagcgcggcgcggctgcgccg 3240153



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>gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete sequence
          Length = 168829

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   agattttgcatccagaccat 162
             ||||||||||||||||||||
Sbjct: 75696 agattttgcatccagaccat 75715



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 27     ctgacatacttagtacaccatgacacat 54
              ||||||||||| |||||||| |||||||
Sbjct: 327487 ctgacatactttgtacaccaggacacat 327460



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 466    gatgatggagttgccgatcatccc 489
              |||||||||||||||| |||||||
Sbjct: 327072 gatgatggagttgccggtcatccc 327049



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>gb|AC011236.8| Homo sapiens BAC clone RP11-312D1 from 2, complete sequence
          Length = 188639

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  caacaaaaaactcagaaaga 145
            ||||||||||||||||||||
Sbjct: 6060 caacaaaaaactcagaaaga 6041



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>dbj|AK105914.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H07, full
            insert sequence
          Length = 1773

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 27   ctgacatacttagtacaccatgacacat 54
            ||||||||||| |||||||| |||||||
Sbjct: 1709 ctgacatactttgtacaccaggacacat 1682



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 466  gatgatggagttgccgatcatccc 489
            |||||||||||||||| |||||||
Sbjct: 1293 gatgatggagttgccggtcatccc 1270



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>dbj|AK071063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080A01, full
            insert sequence
          Length = 1829

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 27   ctgacatacttagtacaccatgacacat 54
            ||||||||||| |||||||| |||||||
Sbjct: 1716 ctgacatactttgtacaccaggacacat 1689



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 466  gatgatggagttgccgatcatccc 489
            |||||||||||||||| |||||||
Sbjct: 1300 gatgatggagttgccggtcatccc 1277



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>gb|AF127374.1|AF127374 Streptomyces lavendulae LinA homolog, cytochrome P450 hydroxylase ORF4,
             cytochrome P450 hydroxylase ORF3, MitT (mitT), MitS
             (mitS), MitR (mitR), MitQ (mitQ), MitP (mitP), MitO
             (mitO), MitN (mitN), MitM (mitM), MitL (mitL), MitK
             (mitK), MitJ (mitJ), MitI (mitI), MitH (mitH), MitG
             (mitG), MitF (mitF), MitE (mitE), MitD (mitD), MitC
             (mitC), MitB (mitB), MitA (mitA), MmcA (mmcA), MmcB
             (mmcB), MmcC (mmcC), MmcD (mmcD), MmcE (mmcE), MmcF
             (mmcF), MmcG (mmcG), MmcH (mmcH), MmcI (mmcI), MmcJ
             (mmcJ), MmcK (mmcK), MmcL (mmcL), MmcM (mmcM), MmcN
             (mmcN), MmcO (mmcO), Mrd (mrd), MmcP (mmcP), MmcQ (mmcQ),
             MmcR (mmcR), MmcS (mmcS), MmcT (mmcT), MmcU (mmcU), MmcV
             (mmcV), Mct (mct), MmcW (mmcW), MmcX (mmcX), and MmcY
             (mmcY) genes, complete cds; and unknown genes
          Length = 63734

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   acacgtggtggcctgcgagc 417
             ||||||||||||||||||||
Sbjct: 50928 acacgtggtggcctgcgagc 50947



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>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23,
             complete sequence
          Length = 115972

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 27    ctgacatacttagtacaccatgacacat 54
             ||||||||||| |||||||| |||||||
Sbjct: 12147 ctgacatactttgtacaccaggacacat 12120



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 466   gatgatggagttgccgatcatccc 489
             |||||||||||||||| |||||||
Sbjct: 11732 gatgatggagttgccggtcatccc 11709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,994,932
Number of Sequences: 3902068
Number of extensions: 3994932
Number of successful extensions: 80739
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80543
Number of HSP's gapped (non-prelim): 196
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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