Clone Name | rbart20e11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete sequence Length = 123292 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 aaactcagaaagattttgcat 153 ||||||||||||||||||||| Sbjct: 112771 aaactcagaaagattttgcat 112791
>gb|AE005817.1| Caulobacter crescentus CB15 section 143 of 359 of the complete genome Length = 14256 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 acgtggtggcctgcgagcgcggcgc 424 ||||| ||||||||||||||||||| Sbjct: 12829 acgtgatggcctgcgagcgcggcgc 12853
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 aaactcagaaagattttgcat 153 ||||||||||||||||||||| Sbjct: 18882270 aaactcagaaagattttgcat 18882250
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 aaactcagaaagattttgcat 153 ||||||||||||||||||||| Sbjct: 18893524 aaactcagaaagattttgcat 18893504
>ref|XM_470972.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1380 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 466 gatgatggagttgccgatcatccc 489 |||||||||||||||| ||||||| Sbjct: 1218 gatgatggagttgccggtcatccc 1195
>gb|DQ058416.1| Rhizobium etli strain 8C-3 plasmid clone REB02, partial sequence Length = 190912 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ggtggcctgcgagcgcggcg 423 |||||||||||||||||||| Sbjct: 57960 ggtggcctgcgagcgcggcg 57979
>ref|XM_602450.2| PREDICTED: Bos taurus similar to StAR-related lipid transfer protein 9 (StARD9) (START domain-containing protein 9) (LOC524130), partial mRNA Length = 11958 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccttcttcagccaggagctg 84 |||||||||||||||||||| Sbjct: 3054 ccttcttcagccaggagctg 3073
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 gccggggccatcgtcctccacctc 454 |||||||||||| ||||||||||| Sbjct: 4711605 gccggggccatcatcctccacctc 4711628
>gb|AC006377.3| Homo sapiens BAC clone RP11-450H7 from 7, complete sequence Length = 176463 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cttccaggcctcttccttcc 189 |||||||||||||||||||| Sbjct: 22707 cttccaggcctcttccttcc 22688
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 ggtggcctgcgagcgcggcgcggc 427 ||||||| |||||||||||||||| Sbjct: 2206248 ggtggccggcgagcgcggcgcggc 2206271
>gb|AE014313.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 10 of 11 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 gggccatcgtcctccacctc 454 |||||||||||||||||||| Sbjct: 10264 gggccatcgtcctccacctc 10283
>gb|AC142309.1| Pan troglodytes BAC clone RP43-45E24 from 7, complete sequence Length = 186055 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cttccaggcctcttccttcc 189 |||||||||||||||||||| Sbjct: 72272 cttccaggcctcttccttcc 72291
>emb|AL359751.12| Human DNA sequence from clone RP11-166E2 on chromosome 13 Contains the gene for LG30 and the DAOA gene for D-amino acid oxidase activator (LG72), complete sequence Length = 117068 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 gggccatcgtcctccacctc 454 |||||||||||||||||||| Sbjct: 77362 gggccatcgtcctccacctc 77381
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15, complete sequence Length = 144778 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 27 ctgacatacttagtacaccatgacacat 54 ||||||||||| |||||||| ||||||| Sbjct: 123307 ctgacatactttgtacaccaggacacat 123280 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 466 gatgatggagttgccgatcatccc 489 |||||||||||||||| ||||||| Sbjct: 122892 gatgatggagttgccggtcatccc 122869
>gb|AC149874.2| Xenopus tropicalis clone CH216-146M19, complete sequence Length = 175117 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 accggcgtctgacagctggc 344 |||||||||||||||||||| Sbjct: 52622 accggcgtctgacagctggc 52603
>gb|AE011825.1| Xanthomonas axonopodis pv. citri str. 306, section 203 of 469 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 gatggagttgccgatcatcc 488 |||||||||||||||||||| Sbjct: 1943 gatggagttgccgatcatcc 1962
>gb|AE012255.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 163 of 460 of the complete genome Length = 12201 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 tgcgagcgcggcgcggctgagccg 434 ||||||||||||||||||| |||| Sbjct: 3259 tgcgagcgcggcgcggctgcgccg 3236
>gb|U80928.5|REU80928 Rhizobium etli strain CFN42 symbiotic plasmid p42d, complete sequence Length = 371254 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 ggtggcctgcgagcgcggcg 423 |||||||||||||||||||| Sbjct: 145633 ggtggcctgcgagcgcggcg 145614
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 tgcgagcgcggcgcggctgagccg 434 ||||||||||||||||||| |||| Sbjct: 3240130 tgcgagcgcggcgcggctgcgccg 3240153
>gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete sequence Length = 168829 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 agattttgcatccagaccat 162 |||||||||||||||||||| Sbjct: 75696 agattttgcatccagaccat 75715
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 27 ctgacatacttagtacaccatgacacat 54 ||||||||||| |||||||| ||||||| Sbjct: 327487 ctgacatactttgtacaccaggacacat 327460 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 466 gatgatggagttgccgatcatccc 489 |||||||||||||||| ||||||| Sbjct: 327072 gatgatggagttgccggtcatccc 327049
>gb|AC011236.8| Homo sapiens BAC clone RP11-312D1 from 2, complete sequence Length = 188639 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 caacaaaaaactcagaaaga 145 |||||||||||||||||||| Sbjct: 6060 caacaaaaaactcagaaaga 6041
>dbj|AK105914.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H07, full insert sequence Length = 1773 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 27 ctgacatacttagtacaccatgacacat 54 ||||||||||| |||||||| ||||||| Sbjct: 1709 ctgacatactttgtacaccaggacacat 1682 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 466 gatgatggagttgccgatcatccc 489 |||||||||||||||| ||||||| Sbjct: 1293 gatgatggagttgccggtcatccc 1270
>dbj|AK071063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080A01, full insert sequence Length = 1829 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 27 ctgacatacttagtacaccatgacacat 54 ||||||||||| |||||||| ||||||| Sbjct: 1716 ctgacatactttgtacaccaggacacat 1689 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 466 gatgatggagttgccgatcatccc 489 |||||||||||||||| ||||||| Sbjct: 1300 gatgatggagttgccggtcatccc 1277
>gb|AF127374.1|AF127374 Streptomyces lavendulae LinA homolog, cytochrome P450 hydroxylase ORF4, cytochrome P450 hydroxylase ORF3, MitT (mitT), MitS (mitS), MitR (mitR), MitQ (mitQ), MitP (mitP), MitO (mitO), MitN (mitN), MitM (mitM), MitL (mitL), MitK (mitK), MitJ (mitJ), MitI (mitI), MitH (mitH), MitG (mitG), MitF (mitF), MitE (mitE), MitD (mitD), MitC (mitC), MitB (mitB), MitA (mitA), MmcA (mmcA), MmcB (mmcB), MmcC (mmcC), MmcD (mmcD), MmcE (mmcE), MmcF (mmcF), MmcG (mmcG), MmcH (mmcH), MmcI (mmcI), MmcJ (mmcJ), MmcK (mmcK), MmcL (mmcL), MmcM (mmcM), MmcN (mmcN), MmcO (mmcO), Mrd (mrd), MmcP (mmcP), MmcQ (mmcQ), MmcR (mmcR), MmcS (mmcS), MmcT (mmcT), MmcU (mmcU), MmcV (mmcV), Mct (mct), MmcW (mmcW), MmcX (mmcX), and MmcY (mmcY) genes, complete cds; and unknown genes Length = 63734 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 acacgtggtggcctgcgagc 417 |||||||||||||||||||| Sbjct: 50928 acacgtggtggcctgcgagc 50947
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 27 ctgacatacttagtacaccatgacacat 54 ||||||||||| |||||||| ||||||| Sbjct: 12147 ctgacatactttgtacaccaggacacat 12120 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 466 gatgatggagttgccgatcatccc 489 |||||||||||||||| ||||||| Sbjct: 11732 gatgatggagttgccggtcatccc 11709 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,994,932 Number of Sequences: 3902068 Number of extensions: 3994932 Number of successful extensions: 80739 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80543 Number of HSP's gapped (non-prelim): 196 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)