ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20e09 |
|---|---|
| Clone Library Name | barley_pub |
>ZN533_BRARE (Q6PBT9) Zinc finger protein 533| Length = 492 Score = 32.3 bits (72), Expect = 0.63 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -3 Query: 344 KTLAAKGTAGPATTVTVMYPDK-SGSCSDAEGKAWDPLAL-KIPGSANAGAPAP 189 KT+ + T TT T + SCSD K+ +PLA K+P S A PAP Sbjct: 192 KTITSTSTNTTTTTTTTSSCTAVTASCSDQTEKSTEPLAAHKVPASPQAFVPAP 245
>SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 31.6 bits (70), Expect = 1.1 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Frame = -3 Query: 335 AAKGTAGPAT-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 159 A G G AT T T +G+ S A + +L G +AG A S+ Sbjct: 17 AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70 Query: 158 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 39 P Y+ L C G + C S +CC TCRG Sbjct: 71 FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109
>SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 31.6 bits (70), Expect = 1.1 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Frame = -3 Query: 335 AAKGTAGPAT-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 159 A G G AT T T +G+ S A + +L G +AG A S+ Sbjct: 17 AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70 Query: 158 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 39 P Y+ L C G + C S +CC TCRG Sbjct: 71 FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109
>SINA_DROVI (P29304) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 31.2 bits (69), Expect = 1.4 Identities = 27/98 (27%), Positives = 37/98 (37%) Frame = -3 Query: 332 AKGTAGPATTVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWNLA 153 A TA AT + +G+ S A + +L G +AG A S+ Sbjct: 19 AAATAVVATNTSSSTGSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------FE 72 Query: 152 APGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 39 P Y+ L C G + C S +CC TCRG Sbjct: 73 CPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109
>MUC1_XENLA (Q05049) Integumentary mucin C.1 (FIM-C.1) (Fragment)| Length = 662 Score = 30.8 bits (68), Expect = 1.8 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Frame = -3 Query: 404 TIAASILGQTIGSRAERIRLKTLAAKG-----TAGPATTVTVMYPDKSGSCSDAEGKAWD 240 T A + G+ + A +T AA G T PATT P + + + A Sbjct: 39 TAAVAATGEDATTAAATAAAETTAAAGEAPTTTTAPATTAAGKAPTTAAATAPTTAAAGA 98 Query: 239 PLALKIPGSANAGAPAPTPSMCF*PWNLAA 150 P A A AP PT + P AA Sbjct: 99 PTTATGKAPATAAAPVPTTAASKAPTTAAA 128
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 30.8 bits (68), Expect = 1.8 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 8/91 (8%) Frame = -3 Query: 269 CSDAEGKAWD----PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLP 102 CS A +W P + P + AP PS+ + P + C AC P Sbjct: 9 CSSAYSDSWQVDDCPESCCEPPCSAPSCCAPAPSLSL----VCTPVSCVSSPCCQAACEP 64 Query: 101 LGETSGIRCYSTTSCCE--TCRG--CVVSPC 21 SG T SCC+ +C+ C SPC Sbjct: 65 SACQSGCTSSCTPSCCQQSSCQPACCTSSPC 95
>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)| Length = 1822 Score = 30.4 bits (67), Expect = 2.4 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -3 Query: 203 GAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRGCVVSP 24 GAP P ++ PG+ ++L + L LPL + C+ +CC+ C + P Sbjct: 690 GAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKAC--LALLP 747 Query: 23 CICN 12 C CN Sbjct: 748 C-CN 750
>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)| Length = 642 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3 Query: 281 KSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPS 180 +SG DA G + PL P A A APAP P+ Sbjct: 277 RSGEAIDALGAHFAPLPAPTPAPAPAPAPAPAPA 310
>SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 331 Score = 29.6 bits (65), Expect = 4.1 Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 2/131 (1%) Frame = -3 Query: 425 PRTAMVFTIAASILGQTIG--SRAERIRLKTLAAKGTAGPATTVTVMYPDKSGSCSDAEG 252 P A +AA + G G S T + T G ++ T + S S S + Sbjct: 12 PTAAAAAAVAAGVGGGVGGGASGVATANTNTTGSSSTGGSSSAGTTSSANTSSSSSSSLS 71 Query: 251 KAWDPLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCY 72 A G +AG A S+ P Y+ L C G + C Sbjct: 72 SA---------GGGDAGMSADLTSL------FECPVCFDYVLPPILQCSS-GHLVCVSCR 115 Query: 71 STTSCCETCRG 39 S +CC TCRG Sbjct: 116 SKLTCCPTCRG 126
>AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Isolectin D)| Length = 213 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%) Frame = -3 Query: 218 GSANAGAPAPTPSMCF*PWNLAAPGTDFYLS-CM*LACL---PLGETSGIRCYSTTSCCE 51 GS + G P ++C W G++F C AC P G+ +G R + CC Sbjct: 117 GSQSGGKLCPN-NLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCS 175 Query: 50 TCRGCVVSPCIC 15 C + P C Sbjct: 176 KWGSCGIGPGYC 187
>AGI3_WHEAT (P10969) Agglutinin isolectin 3 precursor (WGA3) (Fragment)| Length = 186 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%) Frame = -3 Query: 239 PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFY-LSCM*LACL---PLGETSGIRCY 72 P I + AG ++C W G++F C AC P G+ +G R Sbjct: 82 PCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVC 141 Query: 71 STTSCCETCRGCVVSPCIC 15 + CC C + P C Sbjct: 142 TNNYCCSKWGSCGIGPGYC 160
>SYV_WIGBR (Q8D294) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +2 Query: 113 PITYTINRNQYPGRLNSTVR 172 PI Y +N+NQYPG S VR Sbjct: 436 PIWYDVNKNQYPGISESDVR 455
>AGI1_WHEAT (P10968) Agglutinin isolectin 1 precursor (WGA1) (Isolectin A)| Length = 212 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%) Frame = -3 Query: 239 PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLS-CM*LACL---PLGETSGIRCY 72 P I + AG ++C W G++F C AC P G+ +G R Sbjct: 108 PCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVC 167 Query: 71 STTSCCETCRGCVVSPCIC 15 + CC C + P C Sbjct: 168 TNNYCCSKWGSCGIGPGYC 186
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 28.9 bits (63), Expect = 6.9 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Frame = -3 Query: 188 TPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCE--TCRG--CVVSPC 21 TPS C AP L C ++C P SG T SCC+ +C+ C SPC Sbjct: 62 TPSCC-------APAPCLALVCAPVSCEPSPCQSGCTDSCTPSCCQQSSCQPACCTSSPC 114
>TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box protein 18)| Length = 607 Score = 28.9 bits (63), Expect = 6.9 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = -3 Query: 332 AKGTAGPATTVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWNLA 153 A T+GPA + + +G C D + PLA PG + G+PA +LA Sbjct: 79 AGATSGPARSGADLERGAAGGCEDGFQQGASPLA--SPGGSPKGSPAR---------SLA 127 Query: 152 APGT 141 PGT Sbjct: 128 RPGT 131
>NEU2_CAVPO (P10769) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Arg-vasopressin; Neurophysin 2 (Neurophysin-II); Copeptin] Length = 144 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -3 Query: 110 CLPLGETSGIRCYSTTSCCETCRGCVV 30 CLP G RC+ + CC GC V Sbjct: 22 CLPCGPGGQGRCFGPSICCADALGCFV 48
>TREZ_ARTRM (Q9AJN6) Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)| (MTHase) (4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase) (Maltooligosyl trehalose trehalohydrolase) Length = 575 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Frame = +3 Query: 348 TDALSPRPDGLPEDGG---CYGEHHRGSG--HVDG 437 T AL P P G+PE GG YGE G+ H+DG Sbjct: 532 TVALRPGPVGVPEHGGLVLAYGEVRAGAAGLHLDG 566
>AMO_SCHPO (O42890) Putative copper amine oxidase (EC 1.4.3.6)| Length = 794 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +2 Query: 38 NHDKFHSRTWYYSTLFHLSHPGAGKPITY-TINRNQYP 148 N+D RTW L L HP +GKP++Y I+R+ P Sbjct: 493 NYDSSTGRTWDICNLNKL-HPYSGKPVSYKLISRDTSP 529
>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome protein| homolog) Length = 1320 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = -3 Query: 308 TTVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPS 180 T V V P K + A DP A PG G APTP+ Sbjct: 208 TDVEVKSPAKPAQAKASAAPAKDPPARTAPGPTKLGNVAPTPA 250
>AGI_HORVU (P15312) Root-specific lectin precursor| Length = 212 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%) Frame = -3 Query: 239 PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFY-LSCM*LACL---PLGETSGIRCY 72 P I + AG ++C W G++F C AC P G+ +G + Sbjct: 108 PCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQGGACSTDKPCGKAAGGKVC 167 Query: 71 STTSCCETCRGCVVSPCIC 15 + CC C + P C Sbjct: 168 TNNYCCSKWGSCGIGPGYC 186
>FHAB_BORPE (P12255) Filamentous hemagglutinin| Length = 3590 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +2 Query: 107 GKPITYTINRNQYPGRLNSTVRST 178 GKP TYTINR + +LN V ST Sbjct: 3537 GKPQTYTINRREDLMKLNGKVLST 3560
>MT_CARMA (P55948) Metallothionein (MT)| Length = 58 Score = 28.5 bits (62), Expect = 9.1 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = -3 Query: 125 CM*LACLPLGE-TSGIRCYSTTSCCETCRGCVVSPCIC 15 C C P + +SG +C + CC+TC PC C Sbjct: 23 CTSCRCTPCEKCSSGCKCTTKEDCCKTC----TKPCSC 56
>FKBP4_ASPFU (Q4WMV5) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 489 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +1 Query: 316 PAVPFAARVFRRMRSALDPMVCPRMEAAMVNTIAVLGML 432 PAVP AA FR +A+DP P E A L ++ Sbjct: 22 PAVPDAAATFRVSMAAIDPDETPEFEDGQTRPRATLKLI 60 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,743,971 Number of Sequences: 219361 Number of extensions: 1196623 Number of successful extensions: 3585 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3333 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3560 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
