Clone Name | rbart20e09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_550510.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1116 Score = 91.7 bits (46), Expect = 2e-15 Identities = 121/146 (82%) Strand = Plus / Minus Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 957 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 898 Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 897 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 838 Query: 447 catcgcgatgaacggaacggcggcat 472 ||| | ||||| ||||| ||||||| Sbjct: 837 cattccaatgaatggaacagcggcat 812 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Minus Query: 223 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 1058 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 999 Query: 283 tctggatacatg 294 | |||||||||| Sbjct: 998 tttggatacatg 987
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 91.7 bits (46), Expect = 2e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 876372 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 876431 Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 876432 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 876491 Query: 447 catcgcgatgaacggaacggcggcat 472 ||| | ||||| ||||| ||||||| Sbjct: 876492 cattccaatgaatggaacagcggcat 876517 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Plus Query: 223 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 876271 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 876330 Query: 283 tctggatacatg 294 | |||||||||| Sbjct: 876331 tttggatacatg 876342 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 cttattccacttgtctcaccc 99 ||||||||||||||||||||| Sbjct: 876066 cttattccacttgtctcaccc 876086
>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) Length = 11618 Score = 91.7 bits (46), Expect = 2e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 8460 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 8519 Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 8520 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 8579 Query: 447 catcgcgatgaacggaacggcggcat 472 ||| | ||||| ||||| ||||||| Sbjct: 8580 cattccaatgaatggaacagcggcat 8605 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Plus Query: 223 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 8359 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 8418 Query: 283 tctggatacatg 294 | |||||||||| Sbjct: 8419 tttggatacatg 8430 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 cttattccacttgtctcaccc 99 ||||||||||||||||||||| Sbjct: 8154 cttattccacttgtctcaccc 8174
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 91.7 bits (46), Expect = 2e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 57267 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 57326 Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 57327 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 57386 Query: 447 catcgcgatgaacggaacggcggcat 472 ||| | ||||| ||||| ||||||| Sbjct: 57387 cattccaatgaatggaacagcggcat 57412 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Plus Query: 223 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 57166 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 57225 Query: 283 tctggatacatg 294 | |||||||||| Sbjct: 57226 tttggatacatg 57237 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 cttattccacttgtctcaccc 99 ||||||||||||||||||||| Sbjct: 56961 cttattccacttgtctcaccc 56981
>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full insert sequence Length = 3418 Score = 91.7 bits (46), Expect = 2e-15 Identities = 121/146 (82%) Strand = Plus / Minus Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 3071 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 3012 Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 3011 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 2952 Query: 447 catcgcgatgaacggaacggcggcat 472 ||| | ||||| ||||| ||||||| Sbjct: 2951 cattccaatgaatggaacagcggcat 2926 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Minus Query: 223 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 3172 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 3113 Query: 283 tctggatacatg 294 | |||||||||| Sbjct: 3112 tttggatacatg 3101 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 cttattccacttgtctcaccc 99 ||||||||||||||||||||| Sbjct: 3377 cttattccacttgtctcaccc 3357
>gb|AF192975.1|AF192975 Oryza sativa unknown gene Length = 673 Score = 91.7 bits (46), Expect = 2e-15 Identities = 121/146 (82%) Strand = Plus / Minus Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 239 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 180 Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 179 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 120 Query: 447 catcgcgatgaacggaacggcggcat 472 ||| | ||||| ||||| ||||||| Sbjct: 119 cattccaatgaatggaacagcggcat 94 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 223 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgca 269 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| Sbjct: 340 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgca 294
>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full insert sequence Length = 1116 Score = 91.7 bits (46), Expect = 2e-15 Identities = 121/146 (82%) Strand = Plus / Minus Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 693 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 634 Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 633 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 574 Query: 447 catcgcgatgaacggaacggcggcat 472 ||| | ||||| ||||| ||||||| Sbjct: 573 cattccaatgaatggaacagcggcat 548 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Minus Query: 223 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 794 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 735 Query: 283 tctggatacatg 294 | |||||||||| Sbjct: 734 tttggatacatg 723 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 cttattccacttgtctcaccc 99 ||||||||||||||||||||| Sbjct: 999 cttattccacttgtctcaccc 979
>ref|XM_476693.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1700 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Minus Query: 324 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 1290 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1231 Query: 384 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 1230 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1171 Query: 444 cagcatcgcgatgaacggaacggcggcat 472 |||||| ||||||| ||||| ||||||| Sbjct: 1170 cagcattccgatgaatggaacagcggcat 1142 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 cagcatcagattacagatgcatggactg 30 |||||||| |||||||||||||| |||| Sbjct: 1658 cagcatcaaattacagatgcatgaactg 1631
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Plus Query: 324 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 3215904 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 3215963 Query: 384 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 3215964 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 3216023 Query: 444 cagcatcgcgatgaacggaacggcggcat 472 |||||| ||||||| ||||| ||||||| Sbjct: 3216024 cagcattccgatgaatggaacagcggcat 3216052 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 3 cagcatcagattacagatgcatggactg 30 |||||||| |||||||||||||| |||| Sbjct: 3215536 cagcatcaaattacagatgcatgaactg 3215563
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455F03 Length = 158201 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Plus Query: 324 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 130894 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 130953 Query: 384 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 130954 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 131013 Query: 444 cagcatcgcgatgaacggaacggcggcat 472 |||||| ||||||| ||||| ||||||| Sbjct: 131014 cagcattccgatgaatggaacagcggcat 131042 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 3 cagcatcagattacagatgcatggactg 30 |||||||| |||||||||||||| |||| Sbjct: 130526 cagcatcaaattacagatgcatgaactg 130553
>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full insert sequence Length = 1699 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Minus Query: 324 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 1289 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1230 Query: 384 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 1229 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1170 Query: 444 cagcatcgcgatgaacggaacggcggcat 472 |||||| ||||||| ||||| ||||||| Sbjct: 1169 cagcattccgatgaatggaacagcggcat 1141 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 cagcatcagattacagatgcatggactg 30 |||||||| |||||||||||||| |||| Sbjct: 1657 cagcatcaaattacagatgcatgaactg 1630
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Plus Query: 324 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 25597 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 25656 Query: 384 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 25657 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 25716 Query: 444 cagcatcgcgatgaacggaacggcggcat 472 |||||| ||||||| ||||| ||||||| Sbjct: 25717 cagcattccgatgaatggaacagcggcat 25745 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 3 cagcatcagattacagatgcatggactg 30 |||||||| |||||||||||||| |||| Sbjct: 25229 cagcatcaaattacagatgcatgaactg 25256
>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence Length = 1457 Score = 87.7 bits (44), Expect = 3e-14 Identities = 122/148 (82%) Strand = Plus / Minus Query: 325 ccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccg 384 ||||||||||| || || | |||||||||||||| ||||| ||||| || || || || Sbjct: 1028 ccctttgcagcctgattccttagacggatgcgctcggcccttgacccaatagtctggcca 969 Query: 385 aggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctc 444 | |||||||||||||||||||| ||||||| || |||||||| || ||||||||| Sbjct: 968 acaatggaggctgctatggtgaatgccatcgcagtcctgggcatcacaacagacttcctc 909 Query: 445 agcatcgcgatgaacggaacggcggcat 472 ||||| || ||||||||||| ||||||| Sbjct: 908 agcattgcaatgaacggaacagcggcat 881
>gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167137 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 gagccaggtatcttcagcgca 234 ||||||||||||||||||||| Sbjct: 138713 gagccaggtatcttcagcgca 138693
>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence Length = 175191 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ttcacagcaggacgtggtact 71 ||||||||||||||||||||| Sbjct: 159317 ttcacagcaggacgtggtact 159337
>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence Length = 150306 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 atgcatggactgacaacaca 38 |||||||||||||||||||| Sbjct: 115683 atgcatggactgacaacaca 115664
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 atgacggtgactgtggtggc 311 |||||||||||||||||||| Sbjct: 174217 atgacggtgactgtggtggc 174236
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 gtcggtgcaggagcgccggc 206 |||||||||||||||||||| Sbjct: 2881007 gtcggtgcaggagcgccggc 2881026
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 cagcatcgcgatgaacggaa 463 |||||||||||||||||||| Sbjct: 159362 cagcatcgcgatgaacggaa 159343
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 atgacggtgactgtggtggc 311 |||||||||||||||||||| Sbjct: 656818 atgacggtgactgtggtggc 656837
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 ggtggcgggaccggcggtgc 325 |||||||||||||||||||| Sbjct: 2508324 ggtggcgggaccggcggtgc 2508305
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cacaaccacgacaagtttca 54 |||||||||||||||||||| Sbjct: 49823 cacaaccacgacaagtttca 49804
>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete sequence Length = 201727 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cgaggatggaggctgctatg 402 |||||||||||||||||||| Sbjct: 162615 cgaggatggaggctgctatg 162596
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 atgacggtgactgtggtggc 311 |||||||||||||||||||| Sbjct: 2017 atgacggtgactgtggtggc 2036 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,081,984 Number of Sequences: 3902068 Number of extensions: 3081984 Number of successful extensions: 49147 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48964 Number of HSP's gapped (non-prelim): 181 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)