ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_550510.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
3emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) 92 2e-15
4dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
6gb|AF192975.1|AF192975 Oryza sativa unknown gene 92 2e-15
7dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
8ref|XM_476693.1| Oryza sativa (japonica cultivar-group), mRNA 90 8e-15
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
10dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
11dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
12dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
13gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, comple... 88 3e-14
14gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Canc... 42 1.6
15gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 42 1.6
16gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 40 6.4
17gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
18gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 6.4
19gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.4
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
21dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.4
22gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence 40 6.4
23emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chro... 40 6.4
24gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4

>ref|XM_550510.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1116

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Minus

                                                                       
Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 957 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 898

                                                                       
Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 897 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 838

                                     
Query: 447 catcgcgatgaacggaacggcggcat 472
           |||  | ||||| ||||| |||||||
Sbjct: 837 cattccaatgaatggaacagcggcat 812



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 223  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 1058 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 999

                        
Query: 283  tctggatacatg 294
            | ||||||||||
Sbjct: 998  tttggatacatg 987



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                          
Query: 327    ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386
              ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 876372 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 876431

                                                                          
Query: 387    gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446
               ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 876432 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 876491

                                        
Query: 447    catcgcgatgaacggaacggcggcat 472
              |||  | ||||| ||||| |||||||
Sbjct: 876492 cattccaatgaatggaacagcggcat 876517



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                          
Query: 223    atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282
              ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 876271 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 876330

                          
Query: 283    tctggatacatg 294
              | ||||||||||
Sbjct: 876331 tttggatacatg 876342



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     cttattccacttgtctcaccc 99
              |||||||||||||||||||||
Sbjct: 876066 cttattccacttgtctcaccc 876086



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>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5)
          Length = 11618

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                        
Query: 327  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 8460 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 8519

                                                                        
Query: 387  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 8520 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 8579

                                      
Query: 447  catcgcgatgaacggaacggcggcat 472
            |||  | ||||| ||||| |||||||
Sbjct: 8580 cattccaatgaatggaacagcggcat 8605



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                        
Query: 223  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 8359 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 8418

                        
Query: 283  tctggatacatg 294
            | ||||||||||
Sbjct: 8419 tttggatacatg 8430



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 79   cttattccacttgtctcaccc 99
            |||||||||||||||||||||
Sbjct: 8154 cttattccacttgtctcaccc 8174



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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                         
Query: 327   ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386
             ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 57267 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 57326

                                                                         
Query: 387   gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446
              ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 57327 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 57386

                                       
Query: 447   catcgcgatgaacggaacggcggcat 472
             |||  | ||||| ||||| |||||||
Sbjct: 57387 cattccaatgaatggaacagcggcat 57412



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 223   atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282
             ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 57166 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 57225

                         
Query: 283   tctggatacatg 294
             | ||||||||||
Sbjct: 57226 tttggatacatg 57237



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    cttattccacttgtctcaccc 99
             |||||||||||||||||||||
Sbjct: 56961 cttattccacttgtctcaccc 56981



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>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full
            insert sequence
          Length = 3418

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Minus

                                                                        
Query: 327  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 3071 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 3012

                                                                        
Query: 387  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 3011 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 2952

                                      
Query: 447  catcgcgatgaacggaacggcggcat 472
            |||  | ||||| ||||| |||||||
Sbjct: 2951 cattccaatgaatggaacagcggcat 2926



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 223  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 3172 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 3113

                        
Query: 283  tctggatacatg 294
            | ||||||||||
Sbjct: 3112 tttggatacatg 3101



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 79   cttattccacttgtctcaccc 99
            |||||||||||||||||||||
Sbjct: 3377 cttattccacttgtctcaccc 3357



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>gb|AF192975.1|AF192975 Oryza sativa unknown gene
          Length = 673

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Minus

                                                                       
Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 239 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 180

                                                                       
Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 179 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 120

                                     
Query: 447 catcgcgatgaacggaacggcggcat 472
           |||  | ||||| ||||| |||||||
Sbjct: 119 cattccaatgaatggaacagcggcat 94



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 223 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgca 269
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||
Sbjct: 340 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgca 294



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>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full
           insert sequence
          Length = 1116

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Minus

                                                                       
Query: 327 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 386
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 693 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 634

                                                                       
Query: 387 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 446
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 633 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 574

                                     
Query: 447 catcgcgatgaacggaacggcggcat 472
           |||  | ||||| ||||| |||||||
Sbjct: 573 cattccaatgaatggaacagcggcat 548



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 223 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 282
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 794 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 735

                       
Query: 283 tctggatacatg 294
           | ||||||||||
Sbjct: 734 tttggatacatg 723



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 79  cttattccacttgtctcaccc 99
           |||||||||||||||||||||
Sbjct: 999 cttattccacttgtctcaccc 979



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>ref|XM_476693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1700

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 123/149 (82%)
 Strand = Plus / Minus

                                                                        
Query: 324  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1290 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1231

                                                                        
Query: 384  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1230 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1171

                                         
Query: 444  cagcatcgcgatgaacggaacggcggcat 472
            ||||||  ||||||| ||||| |||||||
Sbjct: 1170 cagcattccgatgaatggaacagcggcat 1142



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 3    cagcatcagattacagatgcatggactg 30
            |||||||| |||||||||||||| ||||
Sbjct: 1658 cagcatcaaattacagatgcatgaactg 1631



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 123/149 (82%)
 Strand = Plus / Plus

                                                                           
Query: 324     gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383
               |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 3215904 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 3215963

                                                                           
Query: 384     gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443
                |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 3215964 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 3216023

                                            
Query: 444     cagcatcgcgatgaacggaacggcggcat 472
               ||||||  ||||||| ||||| |||||||
Sbjct: 3216024 cagcattccgatgaatggaacagcggcat 3216052



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 3       cagcatcagattacagatgcatggactg 30
               |||||||| |||||||||||||| ||||
Sbjct: 3215536 cagcatcaaattacagatgcatgaactg 3215563



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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 123/149 (82%)
 Strand = Plus / Plus

                                                                          
Query: 324    gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383
              |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 130894 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 130953

                                                                          
Query: 384    gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443
               |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 130954 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 131013

                                           
Query: 444    cagcatcgcgatgaacggaacggcggcat 472
              ||||||  ||||||| ||||| |||||||
Sbjct: 131014 cagcattccgatgaatggaacagcggcat 131042



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 3      cagcatcagattacagatgcatggactg 30
              |||||||| |||||||||||||| ||||
Sbjct: 130526 cagcatcaaattacagatgcatgaactg 130553



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>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full
            insert sequence
          Length = 1699

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 123/149 (82%)
 Strand = Plus / Minus

                                                                        
Query: 324  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1289 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1230

                                                                        
Query: 384  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1229 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1170

                                         
Query: 444  cagcatcgcgatgaacggaacggcggcat 472
            ||||||  ||||||| ||||| |||||||
Sbjct: 1169 cagcattccgatgaatggaacagcggcat 1141



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 3    cagcatcagattacagatgcatggactg 30
            |||||||| |||||||||||||| ||||
Sbjct: 1657 cagcatcaaattacagatgcatgaactg 1630



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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 123/149 (82%)
 Strand = Plus / Plus

                                                                         
Query: 324   gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 383
             |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 25597 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 25656

                                                                         
Query: 384   gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 443
              |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 25657 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 25716

                                          
Query: 444   cagcatcgcgatgaacggaacggcggcat 472
             ||||||  ||||||| ||||| |||||||
Sbjct: 25717 cagcattccgatgaatggaacagcggcat 25745



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 3     cagcatcagattacagatgcatggactg 30
             |||||||| |||||||||||||| ||||
Sbjct: 25229 cagcatcaaattacagatgcatgaactg 25256



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>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence
          Length = 1457

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 122/148 (82%)
 Strand = Plus / Minus

                                                                        
Query: 325  ccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccg 384
            |||||||||||  || || | |||||||||||||| ||||| ||||| || || || || 
Sbjct: 1028 ccctttgcagcctgattccttagacggatgcgctcggcccttgacccaatagtctggcca 969

                                                                        
Query: 385  aggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctc 444
            |  ||||||||||||||||||||  ||||||| || ||||||||    || |||||||||
Sbjct: 968  acaatggaggctgctatggtgaatgccatcgcagtcctgggcatcacaacagacttcctc 909

                                        
Query: 445  agcatcgcgatgaacggaacggcggcat 472
            ||||| || ||||||||||| |||||||
Sbjct: 908  agcattgcaatgaacggaacagcggcat 881



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>gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167137

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 214    gagccaggtatcttcagcgca 234
              |||||||||||||||||||||
Sbjct: 138713 gagccaggtatcttcagcgca 138693



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>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     ttcacagcaggacgtggtact 71
              |||||||||||||||||||||
Sbjct: 159317 ttcacagcaggacgtggtact 159337



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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     atgcatggactgacaacaca 38
              ||||||||||||||||||||
Sbjct: 115683 atgcatggactgacaacaca 115664



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>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
              complete sequence
          Length = 176678

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    atgacggtgactgtggtggc 311
              ||||||||||||||||||||
Sbjct: 174217 atgacggtgactgtggtggc 174236



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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 187     gtcggtgcaggagcgccggc 206
               ||||||||||||||||||||
Sbjct: 2881007 gtcggtgcaggagcgccggc 2881026



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 444    cagcatcgcgatgaacggaa 463
              ||||||||||||||||||||
Sbjct: 159362 cagcatcgcgatgaacggaa 159343



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    atgacggtgactgtggtggc 311
              ||||||||||||||||||||
Sbjct: 656818 atgacggtgactgtggtggc 656837



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 306     ggtggcgggaccggcggtgc 325
               ||||||||||||||||||||
Sbjct: 2508324 ggtggcgggaccggcggtgc 2508305



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>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence
          Length = 317137

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    cacaaccacgacaagtttca 54
             ||||||||||||||||||||
Sbjct: 49823 cacaaccacgacaagtttca 49804



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>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete
              sequence
          Length = 201727

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    cgaggatggaggctgctatg 402
              ||||||||||||||||||||
Sbjct: 162615 cgaggatggaggctgctatg 162596



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>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBb0041A22, complete sequence
          Length = 117919

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  atgacggtgactgtggtggc 311
            ||||||||||||||||||||
Sbjct: 2017 atgacggtgactgtggtggc 2036


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,081,984
Number of Sequences: 3902068
Number of extensions: 3081984
Number of successful extensions: 49147
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48964
Number of HSP's gapped (non-prelim): 181
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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