>SDB84_MOUSE (Q9CQE7) Serologically defined breast cancer antigen NY-BR-84|
           homolog
          Length = 383

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 32/54 (59%), Positives = 46/54 (85%)
 Frame = -3

Query: 471 SPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAGIIDSFIYHGQKALKKKMEIGK 310
           SP+ V  TE++RSF H+LT +CAI+GG+FTVAG+IDS IYH  +A++KK+++GK
Sbjct: 328 SPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381

>SDB84_HUMAN (Q9Y282) Serologically defined breast cancer antigen NY-BR-84|
          Length = 383

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 32/54 (59%), Positives = 46/54 (85%)
 Frame = -3

Query: 471 SPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAGIIDSFIYHGQKALKKKMEIGK 310
           SP+ V  TE++RSF H+LT +CAI+GG+FTVAG+IDS IYH  +A++KK+++GK
Sbjct: 328 SPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381

>ERGI1_BRARE (Q4V8Y6) Endoplasmic reticulum-Golgi intermediate compartment|
           protein 1 (ER-Golgi intermediate compartment 32 kDa
           protein) (ERGIC-32)
          Length = 290

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 30/54 (55%), Positives = 39/54 (72%)
 Frame = -3

Query: 471 SPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAGIIDSFIYHGQKALKKKMEIGK 310
           SPI V +TE  R F  ++T +CAI+GG FTVAGIIDS I+   +A  KK++IGK
Sbjct: 236 SPITVKYTERRRPFYRFITTICAIIGGTFTVAGIIDSCIFTASEAW-KKIQIGK 288

>ERGI1_XENLA (Q6NS19) Endoplasmic reticulum-Golgi intermediate compartment|
           protein 1 (ER-Golgi intermediate compartment 32 kDa
           protein) (ERGIC-32)
          Length = 290

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 27/54 (50%), Positives = 39/54 (72%)
 Frame = -3

Query: 471 SPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAGIIDSFIYHGQKALKKKMEIGK 310
           SPI V +TE  +    ++T +CAI+GG FTVAGI+DSFI+   +A  KK+++GK
Sbjct: 236 SPITVKYTERRQPMYRFITTVCAIIGGTFTVAGILDSFIFTASEAW-KKIQLGK 288

>ERGI1_MOUSE (Q9DC16) Endoplasmic reticulum-Golgi intermediate compartment|
           protein 1 (ER-Golgi intermediate compartment 32 kDa
           protein) (ERGIC-32)
          Length = 290

 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 26/54 (48%), Positives = 38/54 (70%)
 Frame = -3

Query: 471 SPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAGIIDSFIYHGQKALKKKMEIGK 310
           SPI V +TE  +    ++T +CAI+GG FTVAGI+DS I+   +A  KK+++GK
Sbjct: 236 SPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAW-KKIQLGK 288

>ERGI1_HUMAN (Q969X5) Endoplasmic reticulum-Golgi intermediate compartment|
           protein 1 (ER-Golgi intermediate compartment 32 kDa
           protein) (ERGIC-32)
          Length = 290

 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 26/54 (48%), Positives = 38/54 (70%)
 Frame = -3

Query: 471 SPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAGIIDSFIYHGQKALKKKMEIGK 310
           SPI V +TE  +    ++T +CAI+GG FTVAGI+DS I+   +A  KK+++GK
Sbjct: 236 SPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAW-KKIQLGK 288

>DP87_DICDI (Q04503) Prespore protein DP87 precursor|
          Length = 555

 Score = 35.0 bits (79), Expect = 0.099
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 213 RHLVVFVAHTRDPPPYKPQNLENVRCGPGFICTCLS 320
           +H V    H    PP  PQ   +V CGPG+ICT ++
Sbjct: 257 KHPVCVRNHVPPHPPPPPQICGSVNCGPGYICTIIN 292

>HB22_MOUSE (P01915) H-2 class II histocompatibility antigen, E-D beta chain|
           precursor
          Length = 264

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 471 SPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAGIIDSFIYHGQKALKKKMEIGKYR 304
           SP   +  +    FL Y+T+ C    G   V   ++ FIY+ ++ L+   ++G+YR
Sbjct: 21  SPPVALVRDTRPRFLEYVTSECHFYNGTQHVR-FLERFIYNREENLRFDSDVGEYR 75

>HT1_TRYVI (Q27115) Glucose transporter HT1|
          Length = 543

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 139 VLGASAFMSMGRD*LNGLNWRAVLYLEVDTSQNVILSIASLIV 11
           +LG +   + G D  +GL WR  ++  V T+ + +L +  L+V
Sbjct: 227 LLGLAIVKTPGHDKASGLLWRMQVFCSVSTALSALLLVLGLVV 269

>HOLB_BUCAP (Q8K9J2) DNA polymerase III delta' subunit (EC 2.7.7.7)|
          Length = 328

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 344 RRHLRRKWR*ASTDETWTTPNIFQVLWLVRRWIPCMRYKDDEMPKAMKSDDSSH 183
           R H R+K   A   +T     +F+++W + +W+ C++      PK     D+ H
Sbjct: 16  RLHERKKAHHAILIKTQKGMGVFKLVWFISKWLLCLK------PKGTNFCDNCH 63

>SWC3_CANGA (Q6FRS1) SWR1-complex protein 3|
          Length = 659

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 311 STDETWTTPNIFQVLWLVRRWIPCMRYKDDEMPKAMKS 198
           S+  TW +  +F+V W     +P +  KD+ + K ++S
Sbjct: 119 SSRRTWISGEMFEVYWTRANKVPSLAIKDESIIKELES 156

>VE2_HPV13 (Q02263) Regulatory protein E2|
          Length = 377

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 20/100 (20%)
 Frame = +2

Query: 173 SSTNVNYHHFSWPSASRRLCSAYTGSTSLQATKLGKC*VWSRFHLYLPISIFFLSAFCPW 352
           ++ N+N +H++          A T    LQ      C    R+ L+      FL A   W
Sbjct: 271 ANNNINVNHYNNNKGRDNSYCAATPIVQLQGDS--NCLKCFRYRLHEKYKDLFLLASSTW 328

Query: 353 -----------------YMNESMMP---ATVKIPPTIAHR 412
                            Y+NE        TVKIPPTI H+
Sbjct: 329 HWTAPNNSQKHALVTLTYVNEQQRQDFLKTVKIPPTITHK 368


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,364,821
Number of Sequences: 219361
Number of extensions: 1545716
Number of successful extensions: 4012
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4010
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)