ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY112405.1| Zea mays CL10251_1 mRNA sequence 168 1e-38
2ref|XM_475457.1| Oryza sativa (japonica cultivar-group), predic... 161 3e-36
3dbj|AK105601.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
4dbj|AK101147.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
5dbj|AK073984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
6dbj|AK071895.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
7gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome... 94 5e-16
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
9dbj|AK059138.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
10ref|NM_102070.2| Arabidopsis thaliana unknown protein AT1G22200 ... 54 4e-04
11ref|NM_001036000.1| Arabidopsis thaliana unknown protein AT1G222... 54 4e-04
12gb|AY113908.1| Arabidopsis thaliana unknown protein (At1g22200) ... 54 4e-04
13gb|AF370338.1| Arabidopsis thaliana unknown protein (At1g22200) ... 54 4e-04
14gb|AY085626.1| Arabidopsis thaliana clone 16380 mRNA, complete s... 54 4e-04
15gb|AC073942.2|F16L1 Sequence of BAC F16L1 from Arabidopsis thali... 54 4e-04
16gb|AY112254.1| Zea mays CL9004_1 mRNA sequence 50 0.007
17emb|AL645862.14| Mouse DNA sequence from clone RP23-223A11 on ch... 46 0.10
18gb|AC007571.6| Drosophila melanogaster, chromosome 3R, region 85... 44 0.41
19gb|AE003679.2| Drosophila melanogaster chromosome 3R, section 17... 44 0.41
20emb|BX510307.21| Zebrafish DNA sequence from clone DKEY-9F17 in ... 42 1.6
21ref|XM_847798.1| PREDICTED: Canis familiaris similar to ER-Golgi... 42 1.6
22ref|XM_861389.1| PREDICTED: Canis familiaris similar to ER-Golgi... 42 1.6
23gb|U61950.2| Caenorhabditis elegans cosmid C45E5, complete sequence 40 6.4
24ref|XM_454618.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E14872g ... 40 6.4
25gb|AC118545.20| Mus musculus strain C57BL/6J clone rp23-324o14 m... 40 6.4
26gb|U41008.1| Caenorhabditis elegans cosmid F44E8, complete sequence 40 6.4
27emb|AL590138.7| Human DNA sequence from clone RP11-243A2 on chro... 40 6.4
28emb|AL513342.7| Human DNA sequence from clone RP11-96F14 on chro... 40 6.4
29emb|AL139374.18| Human DNA sequence from clone RP11-118F16 on ch... 40 6.4
30emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J2... 40 6.4
31emb|AL031733.3|HS455J7 Human DNA sequence from clone RP3-455J7 o... 40 6.4
32ref|XM_782112.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.4
33emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.4
34emb|AL954167.4| Mouse DNA sequence from clone RP23-300M3 on chro... 40 6.4
35gb|AC063962.11| Homo sapiens chromosome 10 clone RP11-222G7, com... 40 6.4
36gb|AC018511.5| Homo sapiens chromosome 10 clone RP11-77G23, comp... 40 6.4
37gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, com... 40 6.4
38gb|AC067719.12| Homo sapiens 3 BAC RP11-183L23 (Roswell Park Can... 40 6.4
39emb|AJ329714.1|HSA329714 Homo sapiens genomic sequence surroundi... 40 6.4
40gb|AC091777.26| Mus musculus strain C57BL/6J chromosome 17 clone... 40 6.4
41gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, com... 40 6.4
42emb|AL672180.11| Mouse DNA sequence from clone RP23-419G22 on ch... 40 6.4
43emb|AL807233.10| Mouse DNA sequence from clone RP23-174O19 on ch... 40 6.4 
>gb|AY112405.1| Zea mays CL10251_1 mRNA sequence
          Length = 565

 Score =  168 bits (85), Expect = 1e-38
 Identities = 145/165 (87%)
 Strand = Plus / Plus

                                                                       
Query: 301 tcatctgtacttgcctatctccattttcttcttaagtgccttctgtccatggtatatgaa 360
           ||||||||| || |||| ||||||||||||||| |||||||||||||| |||||||| ||
Sbjct: 398 tcatctgtatttacctagctccattttcttcttgagtgccttctgtccgtggtatataaa 457

                                                                       
Query: 361 cgagtcgatgatgccagcgacagtgaagatccctccgactatagcacacaggtttgtcag 420
           |||||||||||| || | ||||||||| |  ||||| ||||||||||| |||||||||||
Sbjct: 458 cgagtcgatgatacccgagacagtgaacacacctcccactatagcacaaaggtttgtcag 517

                                                        
Query: 421 gtagtggaggaaggatctattctcctctgtaaatatcacctttat 465
           ||||||||| | ||||||| | || ||||| ||||||||||||||
Sbjct: 518 gtagtggagtagggatctactttcttctgtgaatatcacctttat 562



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 252 cctccttacaagccacaaaacttggaaa 279
           |||||||||| |||||||||||||||||
Sbjct: 341 cctccttacatgccacaaaacttggaaa 368
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>ref|XM_475457.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1155

 Score =  161 bits (81), Expect = 3e-36
 Identities = 150/173 (86%)
 Strand = Plus / Minus

                                                                        
Query: 301  tcatctgtacttgcctatctccattttcttcttaagtgccttctgtccatggtatatgaa 360
            ||||||||||||||||| ||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 1155 tcatctgtacttgcctagctccatttttttcttgagtgccttctgcccgtgatatatgaa 1096

                                                                        
Query: 361  cgagtcgatgatgccagcgacagtgaagatccctccgactatagcacacaggtttgtcag 420
            |||||| |||||||| | ||| ||||| | |||||| ||||||||||| ||||| |||||
Sbjct: 1095 cgagtcaatgatgccggagacggtgaaaacccctcccactatagcacataggttcgtcag 1036

                                                                 
Query: 421  gtagtggaggaaggatctattctcctctgtaaatatcacctttatcggtgaga 473
             |||||||| | ||| ||||| || ||||||||||| |||||||| |||||||
Sbjct: 1035 atagtggagcagggaactattttcttctgtaaatattacctttatgggtgaga 983
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>dbj|AK105601.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A06, full
            insert sequence
          Length = 1630

 Score =  161 bits (81), Expect = 3e-36
 Identities = 150/173 (86%)
 Strand = Plus / Minus

                                                                        
Query: 301  tcatctgtacttgcctatctccattttcttcttaagtgccttctgtccatggtatatgaa 360
            ||||||||||||||||| ||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 1354 tcatctgtacttgcctagctccatttttttcttgagtgccttctgcccgtgatatatgaa 1295

                                                                        
Query: 361  cgagtcgatgatgccagcgacagtgaagatccctccgactatagcacacaggtttgtcag 420
            |||||| |||||||| | ||| ||||| | |||||| ||||||||||| ||||| |||||
Sbjct: 1294 cgagtcaatgatgccggagacggtgaaaacccctcccactatagcacataggttcgtcag 1235

                                                                 
Query: 421  gtagtggaggaaggatctattctcctctgtaaatatcacctttatcggtgaga 473
             |||||||| | ||| ||||| || ||||||||||| |||||||| |||||||
Sbjct: 1234 atagtggagcagggaactattttcttctgtaaatattacctttatgggtgaga 1182
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>dbj|AK101147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026P06, full
            insert sequence
          Length = 1874

 Score =  161 bits (81), Expect = 3e-36
 Identities = 150/173 (86%)
 Strand = Plus / Minus

                                                                        
Query: 301  tcatctgtacttgcctatctccattttcttcttaagtgccttctgtccatggtatatgaa 360
            ||||||||||||||||| ||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 1366 tcatctgtacttgcctagctccatttttttcttgagtgccttctgcccgtgatatatgaa 1307

                                                                        
Query: 361  cgagtcgatgatgccagcgacagtgaagatccctccgactatagcacacaggtttgtcag 420
            |||||| |||||||| | ||| ||||| | |||||| ||||||||||| ||||| |||||
Sbjct: 1306 cgagtcaatgatgccggagacggtgaaaacccctcccactatagcacataggttcgtcag 1247

                                                                 
Query: 421  gtagtggaggaaggatctattctcctctgtaaatatcacctttatcggtgaga 473
             |||||||| | ||| ||||| || ||||||||||| |||||||| |||||||
Sbjct: 1246 atagtggagcagggaactattttcttctgtaaatattacctttatgggtgaga 1194
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>dbj|AK073984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072O04, full
            insert sequence
          Length = 3048

 Score =  145 bits (73), Expect = 2e-31
 Identities = 139/161 (86%)
 Strand = Plus / Minus

                                                                        
Query: 301  tcatctgtacttgcctatctccattttcttcttaagtgccttctgtccatggtatatgaa 360
            ||||||||||||||||| ||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 2772 tcatctgtacttgcctagctccatttttttcttgagtgccttctgcccgtgatatatgaa 2713

                                                                        
Query: 361  cgagtcgatgatgccagcgacagtgaagatccctccgactatagcacacaggtttgtcag 420
            |||||| |||||||| | ||| ||||| | |||||| ||||||||||| ||||| |||||
Sbjct: 2712 cgagtcaatgatgccggagacggtgaaaacccctcccactatagcacataggttcgtcag 2653

                                                     
Query: 421  gtagtggaggaaggatctattctcctctgtaaatatcacct 461
             |||||||| | ||| ||||| || ||||||||||| ||||
Sbjct: 2652 atagtggagcagggaactattttcttctgtaaatattacct 2612
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>dbj|AK071895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058G08, full
            insert sequence
          Length = 1536

 Score =  145 bits (73), Expect = 2e-31
 Identities = 139/161 (86%)
 Strand = Plus / Minus

                                                                        
Query: 301  tcatctgtacttgcctatctccattttcttcttaagtgccttctgtccatggtatatgaa 360
            ||||||||||||||||| ||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 1260 tcatctgtacttgcctagctccatttttttcttgagtgccttctgcccgtgatatatgaa 1201

                                                                        
Query: 361  cgagtcgatgatgccagcgacagtgaagatccctccgactatagcacacaggtttgtcag 420
            |||||| |||||||| | ||| ||||| | |||||| ||||||||||| ||||| |||||
Sbjct: 1200 cgagtcaatgatgccggagacggtgaaaacccctcccactatagcacataggttcgtcag 1141

                                                     
Query: 421  gtagtggaggaaggatctattctcctctgtaaatatcacct 461
             |||||||| | ||| ||||| || ||||||||||| ||||
Sbjct: 1140 atagtggagcagggaactattttcttctgtaaatattacct 1100
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>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0088I06, complete sequence
          Length = 187651

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 301  tcatctgtacttgcctatctccattttcttcttaagtgccttctgtccatggtatatgaa 360
            ||||||||||||||||| ||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 9798 tcatctgtacttgcctagctccatttttttcttgagtgccttctgcccgtgatatatgaa 9739

                           
Query: 361  cgagtcgatgatgcc 375
            |||||| ||||||||
Sbjct: 9738 cgagtcaatgatgcc 9724



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                        
Query: 392  cctccgactatagcacacaggtttgtcaggtagtggaggaaggatctattctcctctgta 451
            ||||| ||||||||||| ||||| ||||| |||||||| | ||| ||||| || ||||||
Sbjct: 9415 cctcccactatagcacataggttcgtcagatagtggagcagggaactattttcttctgta 9356

                      
Query: 452  aatatcacct 461
            ||||| ||||
Sbjct: 9355 aatattacct 9346
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                            
Query: 301      tcatctgtacttgcctatctccattttcttcttaagtgccttctgtccatggtatatgaa 360
                ||||||||||||||||| ||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 23941309 tcatctgtacttgcctagctccatttttttcttgagtgccttctgcccgtgatatatgaa 23941250

                               
Query: 361      cgagtcgatgatgcc 375
                |||||| ||||||||
Sbjct: 23941249 cgagtcaatgatgcc 23941235



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 392      cctccgactatagcacacaggtttgtcaggtagtggaggaaggatctattctcctctgta 451
                ||||| ||||||||||| ||||| ||||| |||||||| | ||| ||||| || ||||||
Sbjct: 23940926 cctcccactatagcacataggttcgtcagatagtggagcagggaactattttcttctgta 23940867

                          
Query: 452      aatatcacct 461
                ||||| ||||
Sbjct: 23940866 aatattacct 23940857
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>dbj|AK059138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H09, full
           insert sequence
          Length = 518

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 368 atgatgccagcgacagtgaagatccctccgactatagcacacaggtttgtcaggtagtg 426
           ||||||||||| |||||||| |||||||| || |||||||| | |||||||||| ||||
Sbjct: 186 atgatgccagcaacagtgaaaatccctccaacaatagcacatatgtttgtcaggaagtg 128
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>ref|NM_102070.2| Arabidopsis thaliana unknown protein AT1G22200 transcript variant
            AT1G22200.1 mRNA, complete cds
          Length = 1576

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 317  atctccattttcttcttaagtgccttctgtccatggtatatgaacga 363
            ||||||||||||||||||| |||    ||||||||||||||||||||
Sbjct: 1302 atctccattttcttcttaattgctcgttgtccatggtatatgaacga 1256
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>ref|NM_001036000.1| Arabidopsis thaliana unknown protein AT1G22200 transcript variant
            AT1G22200.2 mRNA, complete cds
          Length = 1617

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 317  atctccattttcttcttaagtgccttctgtccatggtatatgaacga 363
            ||||||||||||||||||| |||    ||||||||||||||||||||
Sbjct: 1335 atctccattttcttcttaattgctcgttgtccatggtatatgaacga 1289
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>gb|AY113908.1| Arabidopsis thaliana unknown protein (At1g22200) mRNA, complete cds
          Length = 1192

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 317  atctccattttcttcttaagtgccttctgtccatggtatatgaacga 363
            ||||||||||||||||||| |||    ||||||||||||||||||||
Sbjct: 1145 atctccattttcttcttaattgctcgttgtccatggtatatgaacga 1099
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>gb|AF370338.1| Arabidopsis thaliana unknown protein (At1g22200) mRNA, complete cds
          Length = 1522

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 317  atctccattttcttcttaagtgccttctgtccatggtatatgaacga 363
            ||||||||||||||||||| |||    ||||||||||||||||||||
Sbjct: 1302 atctccattttcttcttaattgctcgttgtccatggtatatgaacga 1256
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>gb|AY085626.1| Arabidopsis thaliana clone 16380 mRNA, complete sequence
          Length = 1540

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 317  atctccattttcttcttaagtgccttctgtccatggtatatgaacga 363
            ||||||||||||||||||| |||    ||||||||||||||||||||
Sbjct: 1285 atctccattttcttcttaattgctcgttgtccatggtatatgaacga 1239
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>gb|AC073942.2|F16L1 Sequence of BAC F16L1 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 36030

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 317   atctccattttcttcttaagtgccttctgtccatggtatatgaacga 363
             ||||||||||||||||||| |||    ||||||||||||||||||||
Sbjct: 22411 atctccattttcttcttaattgctcgttgtccatggtatatgaacga 22365
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>gb|AY112254.1| Zea mays CL9004_1 mRNA sequence
          Length = 649

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                       
Query: 347 ccatggtatatgaacgagtcgatgatgccagcgacagtgaagatccctccgactatagca 406
           |||||||| | ||| || || ||||||||||| || |||||||| ||||| || ||||||
Sbjct: 229 ccatggtacacgaaagaatctatgatgccagcaaccgtgaagatacctccaacaatagca 288

                                    
Query: 407 cacaggtttgtcaggtagtggagga 431
           || | ||| |||||| |||| ||||
Sbjct: 289 catatgttcgtcaggaagtgaagga 313
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>emb|AL645862.14| Mouse DNA sequence from clone RP23-223A11 on chromosome 11, complete
             sequence
          Length = 176011

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 117   atgaaagcacttgcccccaagac 139
             |||||||||||||||||||||||
Sbjct: 64927 atgaaagcacttgcccccaagac 64949
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>gb|AC007571.6| Drosophila melanogaster, chromosome 3R, region 85A1-85A10, BAC clone
             BACR48A14, complete sequence
          Length = 188337

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 143   gcctattctgttttcctttttt 164
             ||||||||||||||||||||||
Sbjct: 76680 gcctattctgttttcctttttt 76701
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>gb|AE003679.2| Drosophila melanogaster chromosome 3R, section 17 of 118 of the complete
              sequence
          Length = 216994

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 143    gcctattctgttttcctttttt 164
              ||||||||||||||||||||||
Sbjct: 150850 gcctattctgttttcctttttt 150829
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>emb|BX510307.21| Zebrafish DNA sequence from clone DKEY-9F17 in linkage group 5,
             complete sequence
          Length = 102019

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 158   cttttttacaagttttcatca 178
             |||||||||||||||||||||
Sbjct: 99832 cttttttacaagttttcatca 99812
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>ref|XM_847798.1| PREDICTED: Canis familiaris similar to ER-Golgi intermediate
           compartment 32 kDa protein (ERGIC-32), transcript
           variant 1 (LOC609628), mRNA
          Length = 939

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 370 gatgccagcgacagtgaagatccctccga 398
           ||||||||||||||||||| |||| ||||
Sbjct: 873 gatgccagcgacagtgaaggtcccaccga 845
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>ref|XM_861389.1| PREDICTED: Canis familiaris similar to ER-Golgi intermediate
           compartment 32 kDa protein (ERGIC-32), transcript
           variant 2 (LOC609628), mRNA
          Length = 836

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 370 gatgccagcgacagtgaagatccctccga 398
           ||||||||||||||||||| |||| ||||
Sbjct: 770 gatgccagcgacagtgaaggtcccaccga 742
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>gb|U61950.2| Caenorhabditis elegans cosmid C45E5, complete sequence
          Length = 27188

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   tctgttttccttttttacaa 168
             ||||||||||||||||||||
Sbjct: 25156 tctgttttccttttttacaa 25137
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>ref|XM_454618.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E14872g predicted mRNA
          Length = 2034

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 413  tttgtcaggtagtggaggaa 432
            ||||||||||||||||||||
Sbjct: 1440 tttgtcaggtagtggaggaa 1421
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>gb|AC118545.20| Mus musculus strain C57BL/6J clone rp23-324o14 map 17, complete
             sequence
          Length = 236365

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 269   aaacttggaaaatgttaggtgtgg 292
             ||||||||||||| ||||||||||
Sbjct: 23124 aaacttggaaaatattaggtgtgg 23101
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>gb|U41008.1| Caenorhabditis elegans cosmid F44E8, complete sequence
          Length = 26465

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  tctgttttccttttttacaa 168
            ||||||||||||||||||||
Sbjct: 7568 tctgttttccttttttacaa 7549
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>emb|AL590138.7| Human DNA sequence from clone RP11-243A2 on chromosome 1 Contains part of
              the PLXNA2 gene for plexin A2, complete sequence
          Length = 164057

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     caagataacattctgtgatg 51
              ||||||||||||||||||||
Sbjct: 126622 caagataacattctgtgatg 126603
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>emb|AL513342.7| Human DNA sequence from clone RP11-96F14 on chromosome 1 Contains part of
              the FMN2 gene for formin 2, complete sequence
          Length = 127208

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 323    attttcttcttaagtgccttctgt 346
              |||||||||||||||| |||||||
Sbjct: 101723 attttcttcttaagtgtcttctgt 101700
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>emb|AL139374.18| Human DNA sequence from clone RP11-118F16 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 53536

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tttccttttttacaagtttt 173
             ||||||||||||||||||||
Sbjct: 49536 tttccttttttacaagtttt 49555
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>emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J24 on chromosome 20p11.23-12.3
             Contains the BTBD3 gene for BTB (POZ) domain containing 3
             (KIAA0952), a novel gene and a CpG island, complete
             sequence
          Length = 167075

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 427   gaggaaggatctattctcctctgt 450
             |||||||||||| |||||||||||
Sbjct: 49223 gaggaaggatcttttctcctctgt 49246
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>emb|AL031733.3|HS455J7 Human DNA sequence from clone RP3-455J7 on chromosome 1q24 Contains the
             5' end of the CD3Z gene for CD3Z antigen zeta polypeptide
             (TiT3 complex), an aldo-keto reductase family 1 member D1
             (delta 4-3-ketosteroid-5-beta-reductase) (AKR1D1)
             pseudogene, the CREG gene for cellular repressor of
             E1A-stimulated genes, a ribosomal protein S18 (RPS18)
             pseudogene, a novel gene, the 5' end of the gene for a
             novel protein and a CpG island, complete sequence
          Length = 215861

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   ttgcccccaagacccagcct 146
             ||||||||||||||||||||
Sbjct: 55154 ttgcccccaagacccagcct 55173
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>ref|XM_782112.1| PREDICTED: Strongylocentrotus purpuratus similar to CG13409-PA
           (LOC582145), mRNA
          Length = 1401

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 200 ttttcatggccttcggcatctcgt 223
           |||||||||| |||||||||||||
Sbjct: 74  ttttcatggctttcggcatctcgt 97
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 413     tttgtcaggtagtggaggaa 432
               ||||||||||||||||||||
Sbjct: 1327773 tttgtcaggtagtggaggaa 1327754
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>emb|AL954167.4| Mouse DNA sequence from clone RP23-300M3 on chromosome 11 Contains a zinc
              finger protein pseudogene, complete sequence
          Length = 190351

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     aactaatctctacccatgga 115
              ||||||||||||||||||||
Sbjct: 123346 aactaatctctacccatgga 123327
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>gb|AC063962.11| Homo sapiens chromosome 10 clone RP11-222G7, complete sequence
          Length = 171818

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   ttacaagccacaaaacttggaaaa 280
             |||||||| |||||||||||||||
Sbjct: 49494 ttacaagcaacaaaacttggaaaa 49517
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>gb|AC018511.5| Homo sapiens chromosome 10 clone RP11-77G23, complete sequence
          Length = 159519

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 257   ttacaagccacaaaacttggaaaa 280
             |||||||| |||||||||||||||
Sbjct: 22498 ttacaagcaacaaaacttggaaaa 22475
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>gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, complete sequence
          Length = 194973

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 256   cttacaagccacaaaacttggaaa 279
             ||||| ||||||||||||||||||
Sbjct: 57742 cttaccagccacaaaacttggaaa 57765
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>gb|AC067719.12| Homo sapiens 3 BAC RP11-183L23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172945

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   ttacaagccacaaaacttggaaaa 280
             |||||||| |||||||||||||||
Sbjct: 28899 ttacaagctacaaaacttggaaaa 28922
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>emb|AJ329714.1|HSA329714 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-QI23C
          Length = 688

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 336 gtgccttctgtccatggtat 355
           ||||||||||||||||||||
Sbjct: 55  gtgccttctgtccatggtat 74
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>gb|AC091777.26| Mus musculus strain C57BL/6J chromosome 17 clone rp23-355b17, complete
              sequence
          Length = 216109

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 269    aaacttggaaaatgttaggtgtgg 292
              ||||||||||||| ||||||||||
Sbjct: 124496 aaacttggaaaatattaggtgtgg 124473
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>gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, complete sequence
          Length = 166914

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 256  cttacaagccacaaaacttggaaa 279
            ||||| ||||||||||||||||||
Sbjct: 8059 cttaccagccacaaaacttggaaa 8082
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>emb|AL672180.11| Mouse DNA sequence from clone RP23-419G22 on chromosome X, complete
              sequence
          Length = 212659

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    ctattctgttttcctttttt 164
              ||||||||||||||||||||
Sbjct: 166293 ctattctgttttcctttttt 166312
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>emb|AL807233.10| Mouse DNA sequence from clone RP23-174O19 on chromosome X, complete
              sequence
          Length = 195054

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    ctgtaaatatcacctttatc 466
              ||||||||||||||||||||
Sbjct: 112301 ctgtaaatatcacctttatc 112282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,608,275
Number of Sequences: 3902068
Number of extensions: 4608275
Number of successful extensions: 100035
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99923
Number of HSP's gapped (non-prelim): 106
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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