ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20e06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY559195.1| Zea mays isolate bti00209 Ac insertion site Length = 440 Score = 159 bits (80), Expect = 1e-35 Identities = 162/188 (86%), Gaps = 1/188 (0%) Strand = Plus / Minus Query: 133 ccgctcaccttctt-cgacgtgccctggatcttcaccggccccgtggagcgcgtcttctt 191 |||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||| Sbjct: 204 ccgctcaccttctttcgacgtgccgtggctcttcacgggccccgtggagcgcgtcttctt 145 Query: 192 ctacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctc 251 |||||| ||| ||||| |||| || || ||| ||| ||||||||| ||||||||| Sbjct: 144 ctacccctacgcgcacacggcggaccacttcgccgcccacctcctgccgtccctcgtctc 85 Query: 252 ctccctctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggccctgccc 311 ||||||||||||| ||||| || ||||||||| || |||||||||||||| || ||||| Sbjct: 84 ctccctctccgccacgctgcgcgcgttctacccgctgctcggccgcgtccgcccgtgccc 25 Query: 312 ggacggcg 319 |||||||| Sbjct: 24 ggacggcg 17
>ref|XM_507055.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1202_E07.32 mRNA Length = 1810 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Plus Query: 133 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 192 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 246 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 305 Query: 193 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 252 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 306 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 365 Query: 253 tccctctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 305 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 366 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 418 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 369 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 421 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 482 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 534
>ref|XM_468435.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1656 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Plus Query: 133 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 192 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 88 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 147 Query: 193 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 252 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 148 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 207 Query: 253 tccctctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 305 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 208 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 260 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 369 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 421 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 324 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 376
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 133 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 192 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 35242118 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 35242059 Query: 193 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 252 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 35242058 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 35241999 Query: 253 tccctctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 305 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 35241998 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 35241946 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 369 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 421 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 35241882 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 35241830 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 16934995 cccgtcgagcgcgtcttcttctacc 16935019 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 16850052 cccgtcgagcgcgtcttcttctacc 16850076 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 16826304 cccgtcgagcgcgtcttcttctacc 16826328
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 133 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 192 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 54168 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 54109 Query: 193 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 252 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 54108 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 54049 Query: 253 tccctctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 305 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 54048 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 53996 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 369 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 421 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 53932 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 53880
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 133 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 192 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 137474 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 137415 Query: 193 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 252 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 137414 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 137355 Query: 253 tccctctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 305 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 137354 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 137302 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 369 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 421 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 137238 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 137186
>dbj|AK100771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120A02, full insert sequence Length = 1810 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Plus Query: 133 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 192 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 246 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 305 Query: 193 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 252 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 306 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 365 Query: 253 tccctctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 305 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 366 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 418 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 369 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 421 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 482 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 534
>dbj|AK060511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D06, full insert sequence Length = 1656 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Plus Query: 133 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 192 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 88 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 147 Query: 193 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 252 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 148 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 207 Query: 253 tccctctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 305 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 208 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 260 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 369 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 421 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 324 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 376
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 492 cgggttcgcgctcgcggccgtccaggtgaccg 523 |||||||||| |||||| |||||||||||||| Sbjct: 90942 cgggttcgcggtcgcggacgtccaggtgaccg 90911
>gb|AC120533.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence Length = 148220 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 240 ccgcctcgtctcctccctctccgccgc 266 ||||||| ||||||||||||||||||| Sbjct: 68379 ccgcctcctctcctccctctccgccgc 68353
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 240 ccgcctcgtctcctccctctccgccgc 266 ||||||| ||||||||||||||||||| Sbjct: 3063009 ccgcctcctctcctccctctccgccgc 3062983 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gcgggaggaggggccggtgg 362 |||||||||||||||||||| Sbjct: 2511637 gcgggaggaggggccggtgg 2511656
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 240 ccgcctcgtctcctccctctccgccgc 266 ||||||| ||||||||||||||||||| Sbjct: 3072040 ccgcctcctctcctccctctccgccgc 3072014 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gcgggaggaggggccggtgg 362 |||||||||||||||||||| Sbjct: 2520668 gcgggaggaggggccggtgg 2520687
>ref|NM_197905.1| Oryza sativa (japonica cultivar-group) putative 4-coumarate CoA ligase (OSJNBa0056G17.30), mRNA Length = 1695 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 240 ccgcctcgtctcctccctctccgccg 265 ||||||||||||||||||| |||||| Sbjct: 213 ccgcctcgtctcctccctcgccgccg 238
>ref|XM_473803.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 171 ccccgtggagcgcgtcttcttctacc 196 |||||| ||||||||||||||||||| Sbjct: 138 ccccgtcgagcgcgtcttcttctacc 163
>ref|XM_811060.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510885.80) partial mRNA Length = 2133 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 346 ggaggaggggccggtggtggcg 367 |||||||||||||||||||||| Sbjct: 1096 ggaggaggggccggtggtggcg 1117
>ref|XM_816852.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506529.170) partial mRNA Length = 1920 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 346 ggaggaggggccggtggtggcg 367 |||||||||||||||||||||| Sbjct: 883 ggaggaggggccggtggtggcg 904
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 ccccgtggagcgcgtcttcttctacc 196 |||||| ||||||||||||||||||| Sbjct: 119951 ccccgtcgagcgcgtcttcttctacc 119926
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 ccccgtggagcgcgtcttcttctacc 196 |||||| ||||||||||||||||||| Sbjct: 47974 ccccgtcgagcgcgtcttcttctacc 47949
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 240 ccgcctcgtctcctccctctccgccg 265 ||||||||||||||||||| |||||| Sbjct: 20662 ccgcctcgtctcctccctcgccgccg 20637
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 ccccgtggagcgcgtcttcttctacc 196 |||||| ||||||||||||||||||| Sbjct: 30644243 ccccgtcgagcgcgtcttcttctacc 30644218 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 ctcctgccccgcctcgtctcctcc 255 ||||||||| |||||||||||||| Sbjct: 34904723 ctcctgccctgcctcgtctcctcc 34904700 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 cccgcctcgtctcctccctctccg 262 ||||||||||| |||||||||||| Sbjct: 23638982 cccgcctcgtcgcctccctctccg 23638959
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 240 ccgcctcgtctcctccctctccgccg 265 ||||||||||||||||||| |||||| Sbjct: 22565993 ccgcctcgtctcctccctcgccgccg 22565968
>dbj|AK105836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E12, full insert sequence Length = 1511 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 171 ccccgtggagcgcgtcttcttctacc 196 |||||| ||||||||||||||||||| Sbjct: 148 ccccgtcgagcgcgtcttcttctacc 173
>dbj|AK073495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F12, full insert sequence Length = 1526 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 171 ccccgtggagcgcgtcttcttctacc 196 |||||| ||||||||||||||||||| Sbjct: 163 ccccgtcgagcgcgtcttcttctacc 188
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 240 ccgcctcgtctcctccctctccgccg 265 ||||||||||||||||||| |||||| Sbjct: 22578461 ccgcctcgtctcctccctcgccgccg 22578436
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 253 tccctctccgccgcgctgggca 274 |||||||||||||||||||||| Sbjct: 2193927 tccctctccgccgcgctgggca 2193948
>ref|XM_465709.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1026 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 148 cccgtcgagcgcgtcttcttctacc 172
>ref|XM_465703.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1404 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 148 cccgtcgagcgcgtcttcttctacc 172
>ref|XM_465699.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 148 cccgtcgagcgcgtcttcttctacc 172
>ref|NM_190429.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1281 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 tctcctccctctccgccgcgc 268 ||||||||||||||||||||| Sbjct: 365 tctcctccctctccgccgcgc 385
>gb|AY022745.1| Oryza sativa microsatellite MRG5070 containing (CCT)X8, closest to marker G56, genomic sequence Length = 224 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 tctcctccctctccgccgcgc 268 ||||||||||||||||||||| Sbjct: 139 tctcctccctctccgccgcgc 159
>gb|AC109329.8| Homo sapiens chromosome 8, clone CTD-3107M8, complete sequence Length = 215644 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 ccccgcgggaggaggggccgg 359 ||||||||||||||||||||| Sbjct: 149421 ccccgcgggaggaggggccgg 149401
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 acttcgacgggctctccggcg 421 ||||||||||||||||||||| Sbjct: 1100 acttcgacgggctctccggcg 1120
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 acttcgacgggctctccggcg 421 ||||||||||||||||||||| Sbjct: 235245 acttcgacgggctctccggcg 235225
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 acttcgacgggctctccggcg 421 ||||||||||||||||||||| Sbjct: 260960 acttcgacgggctctccggcg 260940
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 tctcctccctctccgccgcgc 268 ||||||||||||||||||||| Sbjct: 26315184 tctcctccctctccgccgcgc 26315164
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 tctcctccctctccgccgcgc 268 ||||||||||||||||||||| Sbjct: 35475022 tctcctccctctccgccgcgc 35475002
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 tctcctccctctccgccgcgc 268 ||||||||||||||||||||| Sbjct: 5209 tctcctccctctccgccgcgc 5189
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 tctcctccctctccgccgcgc 268 ||||||||||||||||||||| Sbjct: 98971 tctcctccctctccgccgcgc 98951
>dbj|AP004132.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1089_A02 Length = 117908 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 77100 cccgtcgagcgcgtcttcttctacc 77124
>dbj|AP004998.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036H07 Length = 149797 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 136052 cccgtcgagcgcgtcttcttctacc 136076 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 51109 cccgtcgagcgcgtcttcttctacc 51133 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 27361 cccgtcgagcgcgtcttcttctacc 27385
>dbj|AP004302.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1122_H01 Length = 103030 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 98294 cccgtcgagcgcgtcttcttctacc 98318 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cccgtggagcgcgtcttcttctacc 196 ||||| ||||||||||||||||||| Sbjct: 74546 cccgtcgagcgcgtcttcttctacc 74570
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 tctcctccctctccgccgcgc 268 ||||||||||||||||||||| Sbjct: 44765 tctcctccctctccgccgcgc 44745
>dbj|AK122011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111I11, full insert sequence Length = 2036 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 tctcctccctctccgccgcgc 268 ||||||||||||||||||||| Sbjct: 101 tctcctccctctccgccgcgc 121
>dbj|AK060644.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G02, full insert sequence Length = 1533 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 tctcctccctctccgccgcgc 268 ||||||||||||||||||||| Sbjct: 423 tctcctccctctccgccgcgc 443
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 509 ccgtccaggtgaccgtgttcg 529 ||||||||||||||||||||| Sbjct: 520664 ccgtccaggtgaccgtgttcg 520684
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 aggacggcgggttcgcgctcgcggc 509 |||||||||| |||||||||||||| Sbjct: 1235525 aggacggcggcttcgcgctcgcggc 1235549
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gagcgaggacgacttcgacg 409 |||||||||||||||||||| Sbjct: 2737101 gagcgaggacgacttcgacg 2737082
>gb|AC138196.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032M21 map C83B, complete sequence Length = 48636 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gcgggaggaggggccggtgg 362 |||||||||||||||||||| Sbjct: 46034 gcgggaggaggggccggtgg 46053
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gcgggaggaggggccggtgg 362 |||||||||||||||||||| Sbjct: 110767 gcgggaggaggggccggtgg 110748
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gtgttcgccgggcgcggggt 542 |||||||||||||||||||| Sbjct: 2559979 gtgttcgccgggcgcggggt 2559998
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gccgccgagaagagcagggg 39 |||||||||||||||||||| Sbjct: 1259126 gccgccgagaagagcagggg 1259145
>gb|BC056317.1| Danio rerio myeloid ecotropic viral integration site 4.1a, mRNA (cDNA clone MGC:65739 IMAGE:6799906), complete cds Length = 2178 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acccgtacccgcacccggcc 213 |||||||||||||||||||| Sbjct: 461 acccgtacccgcacccggcc 480
>gb|BC065977.1| Danio rerio myeloid ecotropic viral integration site 4.1a, mRNA (cDNA clone MGC:76814 IMAGE:6972035), complete cds Length = 2176 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acccgtacccgcacccggcc 213 |||||||||||||||||||| Sbjct: 444 acccgtacccgcacccggcc 463
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 235 ctgccccgcctcgtctcctccctctccgccgc 266 |||| ||||||||||| ||||| ||||||||| Sbjct: 25914946 ctgcgccgcctcgtcttctccccctccgccgc 25914977
>gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence Length = 140720 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 235 ctgccccgcctcgtctcctccctctccgccgc 266 |||| ||||||||||| ||||| ||||||||| Sbjct: 92974 ctgcgccgcctcgtcttctccccctccgccgc 92943
>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06, complete sequence Length = 148023 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 ctcctgccccgcctcgtctcctcc 255 ||||||||| |||||||||||||| Sbjct: 110836 ctcctgccctgcctcgtctcctcc 110813
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 cccgcctcgtctcctccctctccg 262 ||||||||||| |||||||||||| Sbjct: 81663 cccgcctcgtcgcctccctctccg 81640
>emb|BX547996.10| Zebrafish DNA sequence from clone CH211-212H16 in linkage group 1, complete sequence Length = 213398 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acccgtacccgcacccggcc 213 |||||||||||||||||||| Sbjct: 191124 acccgtacccgcacccggcc 191143
>gb|AF376049.1|AF376049 Danio rerio transcription factor Meis4.1a (meis4.1a) mRNA, complete cds Length = 1778 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acccgtacccgcacccggcc 213 |||||||||||||||||||| Sbjct: 340 acccgtacccgcacccggcc 359
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 cctcgtctcctccctctccgccgc 266 |||||||||||||||| ||||||| Sbjct: 14004787 cctcgtctcctccctcgccgccgc 14004810
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 235 ctgccccgcctcgtctcctccctctccgccgc 266 |||| ||||||||||| ||||| ||||||||| Sbjct: 26006255 ctgcgccgcctcgtcttctccccctccgccgc 26006286
>ref|NM_131897.2| Danio rerio myeloid ecotropic viral integration site 4.1a (meis4.1a), mRNA Length = 2178 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acccgtacccgcacccggcc 213 |||||||||||||||||||| Sbjct: 461 acccgtacccgcacccggcc 480
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcttcaccggccccgtggag 180 |||||||||||||||||||| Sbjct: 1773814 tcttcaccggccccgtggag 1773795
>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0650H04 Length = 134533 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 cctcgtctcctccctctccgccgc 266 |||||||||||||||| ||||||| Sbjct: 107261 cctcgtctcctccctcgccgccgc 107284
>dbj|AK121846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101J11, full insert sequence Length = 4264 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 ctcctgccccgcctcgtctcctcc 255 ||||||||| |||||||||||||| Sbjct: 5 ctcctgccctgcctcgtctcctcc 28
>dbj|AK071001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075J15, full insert sequence Length = 1443 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 cctcgtctcctccctctccgccgc 266 |||||||||||||||| ||||||| Sbjct: 93 cctcgtctcctccctcgccgccgc 70
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 390 gagcgaggacgacttcgacgggct 413 |||||||||||||| ||||||||| Sbjct: 532026 gagcgaggacgactacgacgggct 532049
>gb|AF134589.1|AF134589 Streptomyces sp. D7 vanillic acid decarboxylation gene cluster, complete sequence Length = 2961 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 132 gccgctcaccttcttcgacgtgccctgg 159 |||||||||| |||||||||||||||| Sbjct: 1415 gccgctcaccggcttcgacgtgccctgg 1442
>dbj|AK065170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C19, full insert sequence Length = 1842 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 cctcgtctcctccctctccgccgc 266 |||||||||||||||| ||||||| Sbjct: 377 cctcgtctcctccctcgccgccgc 354
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete sequence Length = 115564 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 ctcctgccccgcctcgtctcctcc 255 ||||||||| |||||||||||||| Sbjct: 84132 ctcctgccctgcctcgtctcctcc 84109
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cccggacggcgccgggtacg 328 |||||||||||||||||||| Sbjct: 468248 cccggacggcgccgggtacg 468229
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcttcaccggccccgtggag 180 |||||||||||||||||||| Sbjct: 1450520 tcttcaccggccccgtggag 1450501 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,196,360 Number of Sequences: 3902068 Number of extensions: 3196360 Number of successful extensions: 72016 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70437 Number of HSP's gapped (non-prelim): 1570 length of query: 552 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 529 effective length of database: 17,143,297,704 effective search space: 9068804485416 effective search space used: 9068804485416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
