ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20e04 |
|---|---|
| Clone Library Name | barley_pub |
>PER2_HORVU (Q01548) Peroxidase 2 (EC 1.11.1.7) (Fragment)| Length = 170 Score = 40.4 bits (93), Expect(2) = 9e-05 Identities = 17/18 (94%), Positives = 18/18 (100%) Frame = -1 Query: 236 GTKGEIRNNCAVPNRRVQ 183 GTKGEIRNNCAVPNRRV+ Sbjct: 140 GTKGEIRNNCAVPNRRVR 157 Score = 23.1 bits (48), Expect(2) = 9e-05 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -2 Query: 184 RTSRPPSPA 158 RTSRPPSPA Sbjct: 157 RTSRPPSPA 165
>PER3_ARMRU (P17180) Peroxidase C3 precursor (EC 1.11.1.7)| Length = 349 Score = 32.0 bits (71), Expect = 0.44 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -1 Query: 236 GTKGEIRNNCAVPNRRVQDIETAVAGDEGIAADM 135 GT+GEIR NC V N R++ +E D+G+ + + Sbjct: 320 GTQGEIRQNCRVVNSRIRGME----NDDGVVSSI 349
>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21| Length = 1629 Score = 32.0 bits (71), Expect = 0.44 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -2 Query: 226 ARSGTTAPSPTGVSRTSRPPSPATRGSPLTCERYIT 119 A +G ++P+P ++ + PP P + SP ER +T Sbjct: 573 ADTGPSSPTPAHIAEVATPPEPVRQNSPPKAERAVT 608
>PER23_ARATH (O80912) Peroxidase 23 precursor (EC 1.11.1.7) (Atperox P23)| (ATP34) Length = 349 Score = 31.6 bits (70), Expect = 0.57 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -1 Query: 236 GTKGEIRNNCAVPNRRVQDIETAVAGDEGIAADM 135 GT+GEIR NC V N R++ +E D+G+ + + Sbjct: 320 GTQGEIRQNCRVVNPRIRVVE----NDDGVVSSI 349
>PER22_ARATH (P24102) Peroxidase 22 precursor (EC 1.11.1.7) (Atperox P22)| (ATPEa) (Basic peroxidase E) Length = 349 Score = 31.6 bits (70), Expect = 0.57 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -1 Query: 236 GTKGEIRNNCAVPNRRVQDIETAVAGDEGIAADM 135 GT+GEIR NC V N R++ +E D+G+ + + Sbjct: 320 GTQGEIRQNCRVVNPRIRVVE----NDDGVVSSI 349
>UREE_YERFR (Q6UR67) Urease accessory protein ureE| Length = 239 Score = 30.4 bits (67), Expect = 1.3 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +1 Query: 1 GLTSHLIG*TSHFHDSKFKTHRLLNGHSHSH 93 G+ SH G SH HDS +H +GHSHSH Sbjct: 201 GIHSHGDG-HSHSHDSHSHSHDSDHGHSHSH 230
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 30.0 bits (66), Expect = 1.7 Identities = 17/44 (38%), Positives = 20/44 (45%) Frame = -2 Query: 229 RARSGTTAPSPTGVSRTSRPPSPATRGSPLTCERYITNRCNVVV 98 RA S + P SRTS P PA G+PLT C V + Sbjct: 975 RATSSSHNPGHQSTSRTSSPVYPAAYGAPLTSPEPSQPPCAVCI 1018
>CRX_BOVIN (Q9XSK0) Cone-rod homeobox protein| Length = 299 Score = 28.9 bits (63), Expect = 3.7 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -2 Query: 235 APRARSGTTAPSPTGVSRTSRPPSPATRGSPLT 137 +PR+ S P P G+S + PP P GSP T Sbjct: 124 SPRS-STDVCPDPLGISDSYSPPLPGPSGSPTT 155
>ATG15_ASHGO (Q75EN3) Putative lipase ATG15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 544 Score = 28.9 bits (63), Expect = 3.7 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%) Frame = -2 Query: 229 RARSGTTAPSPTGVSRTSRP-PSPATRGSP-LTCE 131 R R GTT+P P+ V+ S+P P+P + GSP TC+ Sbjct: 500 RWRDGTTSPMPSSVA--SKPTPTPTSPGSPSSTCK 532
>CYP4_CAEEL (P52012) Peptidyl-prolyl cis-trans isomerase 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-4) (Cyclophilin mog-6) (Masculinisation of germline protein 6) Length = 523 Score = 28.9 bits (63), Expect = 3.7 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +3 Query: 93 HSTTTLHRLVIYLSHVSGDPLVAGDGGLDVLDTPVGD 203 ++ T HRL+ GDP G GG + D P D Sbjct: 316 YNNTKFHRLIKNFMLQGGDPTGTGHGGESIWDKPFSD 352
>MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)| Length = 984 Score = 28.1 bits (61), Expect = 6.3 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -2 Query: 220 SGTTAPSPTGVSRTSRPP-SPATRGSPLTCERYITNR 113 +G + S T S S P SP T+G+PLTC + NR Sbjct: 208 AGINSVSSTTASFGSFPVHSPITQGTPLTCSPNVENR 244
>CRX_HUMAN (O43186) Cone-rod homeobox protein| Length = 299 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 220 SGTTAPSPTGVSRTSRPPSPATRGSPLT 137 S P P G+S + PP P GSP T Sbjct: 128 STDVCPDPLGISDSYSPPLPGPSGSPTT 155
>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)| Length = 982 Score = 28.1 bits (61), Expect = 6.3 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -2 Query: 220 SGTTAPSPTGVSRTSRPP-SPATRGSPLTCERYITNR 113 +G + S T S S P SP T+G+PLTC + NR Sbjct: 207 AGINSVSSTTASFGSFPVHSPITQGTPLTCSPNVENR 243
>NFRKB_XENTR (Q6P4L9) Nuclear factor related to kappa-B-binding protein| (DNA-binding protein R kappa-B) Length = 1265 Score = 27.7 bits (60), Expect = 8.3 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -2 Query: 217 GTTAPSPTGVSRTSRPPSPATRGSP 143 GT P+ ++ +S PP+P T G+P Sbjct: 699 GTPEPAQLSLTESSMPPTPGTPGTP 723
>MGA_HUMAN (O43451) Maltase-glucoamylase, intestinal [Includes: Maltase (EC| 3.2.1.20) (Alpha-glucosidase); Glucoamylase (EC 3.2.1.3) (Glucan 1,4-alpha-glucosidase)] Length = 1856 Score = 27.7 bits (60), Expect = 8.3 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = -2 Query: 220 SGTTAPSPTGVS--RTSRPPSPATRG-SPLTCERYITN 116 +GT P TG + RT+ PP P T G +P++ E + N Sbjct: 56 TGTPDPGTTGTTHARTTGPPDPGTTGTTPVSAECPVVN 93
>PTH_SILPO (Q5LV91) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 239 Score = 27.7 bits (60), Expect = 8.3 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -2 Query: 232 PRARSGTTAPSPTGVSRTSRPPSPATRGSPLT 137 PR +GT P +R PP+PA +P T Sbjct: 190 PRPSTGTGRPPAKTPARAEEPPAPAASPAPAT 221
>MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR)| Length = 977 Score = 27.7 bits (60), Expect = 8.3 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -2 Query: 220 SGTTAPSPTGVSRTSRPP-SPATRGSPLTCERYITNR 113 +G + S T V S P SP T+G+PLTC + NR Sbjct: 208 AGINSVSSTTVRFGSFPVHSPITQGTPLTCSPTVDNR 244
>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor| Length = 674 Score = 27.7 bits (60), Expect = 8.3 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -2 Query: 232 PRARSGTTAPSPTGVSRTSRPPSPATRGSP 143 P + GT +P P G PP P+ G P Sbjct: 79 PPGKPGTGSPGPQGQPGLPGPPGPSATGKP 108
>HIS52_SYNPX (Q7U899) Imidazole glycerol phosphate synthase subunit hisH2 (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH2) (ImGP synthase subunit hisH2) (IGPS subunit hisH2) Length = 212 Score = 27.7 bits (60), Expect = 8.3 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 11/42 (26%) Frame = +1 Query: 118 WLYISHMSAAIPSSPAT-----------AVSMSWTRLLGTAQ 210 W+Y H AA+P P T +M W R LG Q Sbjct: 143 WVYFVHSYAAVPERPETLAAAASFGSSSVTAMVWQRRLGACQ 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,313,088 Number of Sequences: 219361 Number of extensions: 619705 Number of successful extensions: 3000 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2995 length of database: 80,573,946 effective HSP length: 54 effective length of database: 68,728,452 effective search space used: 1649482848 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
