Clone Name | rbart20e04 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase Length = 1245 Score = 460 bits (232), Expect = e-127 Identities = 232/232 (100%) Strand = Plus / Minus Query: 5 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186 Query: 65 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126 Query: 125 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 1066 Query: 185 ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 236 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1065 ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 1014
>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase Length = 740 Score = 432 bits (218), Expect = e-118 Identities = 232/234 (99%), Gaps = 2/234 (0%) Strand = Plus / Minus Query: 3 tttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 tttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 590 Query: 63 tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattggtt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattggtt 530 Query: 123 atatatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtc 182 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 529 atatatctctcacatgtcagcggcgatcccctcgt-gccggcgacggcggtctcgatgtc 471 Query: 183 ctggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 236 || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 ct-gacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 418
>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar Cheyenne Length = 1226 Score = 157 bits (79), Expect = 2e-35 Identities = 100/107 (93%) Strand = Plus / Minus Query: 130 tctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcctggaca 189 ||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccggtggtggcggtctcgatatcctggaca 1048 Query: 190 cgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 236 |||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 1047 cgcctgttgggggcggcgcagttgttccggatctcgcccttgttgcc 1001
>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds Length = 760 Score = 83.8 bits (42), Expect = 2e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 168 ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 227 ||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct: 587 ggcggtctcgatgcccttgacacggctgttggggacggcgcagttgaaccggatctcgcc 528 Query: 228 ct 229 || Sbjct: 527 ct 526
>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds Length = 1308 Score = 65.9 bits (33), Expect = 5e-08 Identities = 60/69 (86%) Strand = Plus / Minus Query: 168 ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 227 ||||||||||||| | | ||| ||||| ||||||||||||||||| | ||||||||| || Sbjct: 1023 ggcggtctcgatgacatcgacgcgcctattggggacggcgcagttctgccggatctcacc 964 Query: 228 cttggtgcc 236 || |||||| Sbjct: 963 ctgggtgcc 955
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence Length = 253910 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 79 cactcacacagtcacacagtactact 104 |||||| ||||||||||||||||||| Sbjct: 35412 cactcatacagtcacacagtactact 35437
>ref|XM_474444.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 970 cggcgcagttgttgcggatctcgcc 946
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 90573 cggcgcagttgttgcggatctcgcc 90549
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 35222888 cggcgcagttgttgcggatctcgcc 35222912
>dbj|AK104833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B05, full insert sequence Length = 1298 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 1026 cggcgcagttgttgcggatctcgcc 1002
>dbj|AK102307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B01, full insert sequence Length = 1487 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 1177 cggcgcagttgttgcggatctcgcc 1153
>dbj|AK060789.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D09, full insert sequence Length = 1349 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 1028 cggcgcagttgttgcggatctcgcc 1004
>tpe|BN000588.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx59 gene for class III peroxidase 59 precursor, exons 1-3 Length = 1290 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 1219 cggcgcagttgttgcggatctcgcc 1195
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 66474 cggcgcagttgttgcggatctcgcc 66498
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 18733 cggcgcagttgttgcggatctcgcc 18757
>gb|AF019743.1|AF019743 Oryza sativa cationic peroxidase (OsCPX1) mRNA, complete cds Length = 1333 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggcgcagttgttccggatctcgcc 227 ||||||||||||| ||||||||||| Sbjct: 1015 cggcgcagttgttgcggatctcgcc 991
>ref|NM_183542.2| Oryza sativa (japonica cultivar-group), mRNA Length = 653 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tcgtcgccggcgacggcggt 173 |||||||||||||||||||| Sbjct: 440 tcgtcgccggcgacggcggt 459
>ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1472 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cgatcccctcgtcgccggcg 165 |||||||||||||||||||| Sbjct: 48 cgatcccctcgtcgccggcg 67
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gtttgacctctcatcttatt 21 |||||||||||||||||||| Sbjct: 129021 gtttgacctctcatcttatt 129040
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gtttgacctctcatcttatt 21 |||||||||||||||||||| Sbjct: 14770 gtttgacctctcatcttatt 14789
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 tcccctcgtcgccggcgacggcgg 172 ||||||||||||||||| |||||| Sbjct: 14162748 tcccctcgtcgccggcgccggcgg 14162771
>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence Length = 122903 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 tcccctcgtcgccggcgacggcgg 172 ||||||||||||||||| |||||| Sbjct: 37039 tcccctcgtcgccggcgccggcgg 37062
>gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome 8, complete sequence Length = 199032 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 gttatatatctctcacatgtcagc 143 ||||||||||| |||||||||||| Sbjct: 173426 gttatatatctatcacatgtcagc 173449
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtttgacctctcatcttatt 21 |||||||||||||||||||| Sbjct: 11484767 gtttgacctctcatcttatt 11484748
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cgatcccctcgtcgccggcg 165 |||||||||||||||||||| Sbjct: 22867465 cgatcccctcgtcgccggcg 22867484
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 tcccctcgtcgccggcgacggcgg 172 ||||||||||||||||| |||||| Sbjct: 14157723 tcccctcgtcgccggcgccggcgg 14157746
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tcgtcgccggcgacggcggt 173 |||||||||||||||||||| Sbjct: 631577 tcgtcgccggcgacggcggt 631596
>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032H19 Length = 126434 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tcgtcgccggcgacggcggt 173 |||||||||||||||||||| Sbjct: 15321 tcgtcgccggcgacggcggt 15340
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tcgtcgccggcgacggcggt 173 |||||||||||||||||||| Sbjct: 106182 tcgtcgccggcgacggcggt 106201
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cgatcccctcgtcgccggcg 165 |||||||||||||||||||| Sbjct: 60732 cgatcccctcgtcgccggcg 60751
>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full insert sequence Length = 1471 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cgatcccctcgtcgccggcg 165 |||||||||||||||||||| Sbjct: 47 cgatcccctcgtcgccggcg 66
>dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133N12, full insert sequence Length = 654 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tcgtcgccggcgacggcggt 173 |||||||||||||||||||| Sbjct: 440 tcgtcgccggcgacggcggt 459
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtttgacctctcatcttatt 21 |||||||||||||||||||| Sbjct: 11563956 gtttgacctctcatcttatt 11563937
>gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complete sequence Length = 185158 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 gttatatatctctcacatgtcagc 143 ||||||||||| |||||||||||| Sbjct: 41286 gttatatatctatcacatgtcagc 41309 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,598,425 Number of Sequences: 3902068 Number of extensions: 1598425 Number of successful extensions: 41844 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41495 Number of HSP's gapped (non-prelim): 347 length of query: 236 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 214 effective length of database: 17,147,199,772 effective search space: 3669500751208 effective search space used: 3669500751208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)