ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 460 e-127
2emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase 432 e-118
3emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 157 2e-35
4gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, par... 84 2e-13
5gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, p... 66 5e-08
6gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, co... 44 0.19
7ref|XM_474444.1| Oryza sativa (japonica cultivar-group), predic... 42 0.77
8emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 42 0.77
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.77
10dbj|AK104833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
11dbj|AK102307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
12dbj|AK060789.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
13tpe|BN000588.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 42 0.77
14emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 0.77
15emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 42 0.77
16gb|AF019743.1|AF019743 Oryza sativa cationic peroxidase (OsCPX1)... 42 0.77
17ref|NM_183542.2| Oryza sativa (japonica cultivar-group), mRNA 40 3.0
18ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.0
19gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
20gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 40 3.0
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.0
22gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 3.0
23gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome... 40 3.0
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
28dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
29dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
30dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
31dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0
32dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0
33gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
34gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complet... 40 3.0

>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  460 bits (232), Expect = e-127
 Identities = 232/232 (100%)
 Strand = Plus / Minus

                                                                        
Query: 5    tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186

                                                                        
Query: 65   gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126

                                                                        
Query: 125  atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 1066

                                                                
Query: 185  ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 1014



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>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase
          Length = 740

 Score =  432 bits (218), Expect = e-118
 Identities = 232/234 (99%), Gaps = 2/234 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   tttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 590

                                                                       
Query: 63  tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattggtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattggtt 530

                                                                       
Query: 123 atatatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtc 182
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 529 atatatctctcacatgtcagcggcgatcccctcgt-gccggcgacggcggtctcgatgtc 471

                                                                 
Query: 183 ctggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 236
           || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ct-gacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 418



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>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar
            Cheyenne
          Length = 1226

 Score =  157 bits (79), Expect = 2e-35
 Identities = 100/107 (93%)
 Strand = Plus / Minus

                                                                        
Query: 130  tctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcctggaca 189
            ||||||||||| |||||||||||||||||||||| |  |||||||||||| |||||||||
Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccggtggtggcggtctcgatatcctggaca 1048

                                                           
Query: 190  cgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 236
            |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1047 cgcctgttgggggcggcgcagttgttccggatctcgcccttgttgcc 1001



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>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds
          Length = 760

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                       
Query: 168 ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 227
           ||||||||||||| ||| |||||| |||||||||||||||||||||  ||||||||||||
Sbjct: 587 ggcggtctcgatgcccttgacacggctgttggggacggcgcagttgaaccggatctcgcc 528

             
Query: 228 ct 229
           ||
Sbjct: 527 ct 526



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>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds
          Length = 1308

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                        
Query: 168  ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 227
            ||||||||||||| | | ||| ||||| ||||||||||||||||| | ||||||||| ||
Sbjct: 1023 ggcggtctcgatgacatcgacgcgcctattggggacggcgcagttctgccggatctcacc 964

                     
Query: 228  cttggtgcc 236
            || ||||||
Sbjct: 963  ctgggtgcc 955



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>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence
          Length = 253910

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 79    cactcacacagtcacacagtactact 104
             |||||| |||||||||||||||||||
Sbjct: 35412 cactcatacagtcacacagtactact 35437



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>ref|XM_474444.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 203 cggcgcagttgttccggatctcgcc 227
           ||||||||||||| |||||||||||
Sbjct: 970 cggcgcagttgttgcggatctcgcc 946



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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 203   cggcgcagttgttccggatctcgcc 227
             ||||||||||||| |||||||||||
Sbjct: 90573 cggcgcagttgttgcggatctcgcc 90549



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 203      cggcgcagttgttccggatctcgcc 227
                ||||||||||||| |||||||||||
Sbjct: 35222888 cggcgcagttgttgcggatctcgcc 35222912



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>dbj|AK104833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B05, full
            insert sequence
          Length = 1298

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 203  cggcgcagttgttccggatctcgcc 227
            ||||||||||||| |||||||||||
Sbjct: 1026 cggcgcagttgttgcggatctcgcc 1002



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>dbj|AK102307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B01, full
            insert sequence
          Length = 1487

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 203  cggcgcagttgttccggatctcgcc 227
            ||||||||||||| |||||||||||
Sbjct: 1177 cggcgcagttgttgcggatctcgcc 1153



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>dbj|AK060789.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D09, full
            insert sequence
          Length = 1349

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 203  cggcgcagttgttccggatctcgcc 227
            ||||||||||||| |||||||||||
Sbjct: 1028 cggcgcagttgttgcggatctcgcc 1004



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>tpe|BN000588.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx59 gene for
            class III peroxidase 59 precursor, exons 1-3
          Length = 1290

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 203  cggcgcagttgttccggatctcgcc 227
            ||||||||||||| |||||||||||
Sbjct: 1219 cggcgcagttgttgcggatctcgcc 1195



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>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 203   cggcgcagttgttccggatctcgcc 227
             ||||||||||||| |||||||||||
Sbjct: 66474 cggcgcagttgttgcggatctcgcc 66498



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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 203   cggcgcagttgttccggatctcgcc 227
             ||||||||||||| |||||||||||
Sbjct: 18733 cggcgcagttgttgcggatctcgcc 18757



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>gb|AF019743.1|AF019743 Oryza sativa cationic peroxidase (OsCPX1) mRNA, complete cds
          Length = 1333

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 203  cggcgcagttgttccggatctcgcc 227
            ||||||||||||| |||||||||||
Sbjct: 1015 cggcgcagttgttgcggatctcgcc 991



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>ref|NM_183542.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 653

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 tcgtcgccggcgacggcggt 173
           ||||||||||||||||||||
Sbjct: 440 tcgtcgccggcgacggcggt 459



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>ref|XM_478764.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1472

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 cgatcccctcgtcgccggcg 165
           ||||||||||||||||||||
Sbjct: 48  cgatcccctcgtcgccggcg 67



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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      gtttgacctctcatcttatt 21
              ||||||||||||||||||||
Sbjct: 129021 gtttgacctctcatcttatt 129040



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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     gtttgacctctcatcttatt 21
             ||||||||||||||||||||
Sbjct: 14770 gtttgacctctcatcttatt 14789



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 149      tcccctcgtcgccggcgacggcgg 172
                ||||||||||||||||| ||||||
Sbjct: 14162748 tcccctcgtcgccggcgccggcgg 14162771



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>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0012F18, from chromosome 3, complete sequence
          Length = 122903

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   tcccctcgtcgccggcgacggcgg 172
             ||||||||||||||||| ||||||
Sbjct: 37039 tcccctcgtcgccggcgccggcgg 37062



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>gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome 8, complete sequence
          Length = 199032

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 120    gttatatatctctcacatgtcagc 143
              ||||||||||| ||||||||||||
Sbjct: 173426 gttatatatctatcacatgtcagc 173449



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 2        gtttgacctctcatcttatt 21
                ||||||||||||||||||||
Sbjct: 11484767 gtttgacctctcatcttatt 11484748



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 146      cgatcccctcgtcgccggcg 165
                ||||||||||||||||||||
Sbjct: 22867465 cgatcccctcgtcgccggcg 22867484



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 149      tcccctcgtcgccggcgacggcgg 172
                ||||||||||||||||| ||||||
Sbjct: 14157723 tcccctcgtcgccggcgccggcgg 14157746



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    tcgtcgccggcgacggcggt 173
              ||||||||||||||||||||
Sbjct: 631577 tcgtcgccggcgacggcggt 631596



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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032H19
          Length = 126434

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tcgtcgccggcgacggcggt 173
             ||||||||||||||||||||
Sbjct: 15321 tcgtcgccggcgacggcggt 15340



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>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439B06
          Length = 135991

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    tcgtcgccggcgacggcggt 173
              ||||||||||||||||||||
Sbjct: 106182 tcgtcgccggcgacggcggt 106201



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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   cgatcccctcgtcgccggcg 165
             ||||||||||||||||||||
Sbjct: 60732 cgatcccctcgtcgccggcg 60751



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>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full
           insert sequence
          Length = 1471

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 cgatcccctcgtcgccggcg 165
           ||||||||||||||||||||
Sbjct: 47  cgatcccctcgtcgccggcg 66



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>dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133N12, full
           insert sequence
          Length = 654

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 tcgtcgccggcgacggcggt 173
           ||||||||||||||||||||
Sbjct: 440 tcgtcgccggcgacggcggt 459



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 2        gtttgacctctcatcttatt 21
                ||||||||||||||||||||
Sbjct: 11563956 gtttgacctctcatcttatt 11563937



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>gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complete sequence
          Length = 185158

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   gttatatatctctcacatgtcagc 143
             ||||||||||| ||||||||||||
Sbjct: 41286 gttatatatctatcacatgtcagc 41309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,598,425
Number of Sequences: 3902068
Number of extensions: 1598425
Number of successful extensions: 41844
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41495
Number of HSP's gapped (non-prelim): 347
length of query: 236
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 214
effective length of database: 17,147,199,772
effective search space: 3669500751208
effective search space used: 3669500751208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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