ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AZR1_YEAST (P50080) Azole resistance protein 1 31 1.7
2AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase I... 30 2.8
3VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprot... 30 3.7
4Y148_MYCGE (P47394) Hypothetical protein MG148 30 4.8
5AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 1... 30 4.8
6NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 29 6.3

>AZR1_YEAST (P50080) Azole resistance protein 1|
          Length = 613

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 152 FHVTLPLGFMYCFVYLLVYLRGSGDY--TSSNVMCFSNNFVLLCRSICVILL 3
           F+V LP+G +  F++L  Y  G   +  T  N+  F + F+ + R++   LL
Sbjct: 224 FYVNLPIGGLAFFLFLFFYNPGLSTFQETMDNIRKFPSQFIEIVRNVAYHLL 275



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>AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)|
            (ATPase class I type 11C) (ATPase IG) (ATPase IQ) (ATPase
            class VI type 11C)
          Length = 1132

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 171  YFFFLRIPRYITTWVYVLLCLFVSLFARV 85
            YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 1057 YFVFAQMLSSVSTWLAIILLIFISLFPEI 1085



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>VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprotein G2;|
           Nonstructural protein NS-M; Glycoprotein G1]
          Length = 1441

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
 Frame = -1

Query: 177 ISYFFFLRIPRYITTWVYVLLCLFVSL--------FARVGRLYEQQCDVF 52
           I++++F+ I  Y  TW  +++ L + L        F+ +  +Y ++CD++
Sbjct: 354 INFYYFVCIMNYAVTWGLIIIGLLIGLLFKKYQHRFSNLYAMYCEECDMY 403



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>Y148_MYCGE (P47394) Hypothetical protein MG148|
          Length = 409

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +1

Query: 34  KTKLLEKHITLLLV*SPDPRK*TNK*TKQYINPSGNVTWNTKEKKVGNGRALHVT---HH 204
           KT L +K   LLL    + +    K  + YIN    +    KE ++ N + L  +     
Sbjct: 78  KTMLNDKEQALLLKTKLELQNQFQKQIENYINEINKLKLTNKELEITNQKQLESSLKLQR 137

Query: 205 TQYREQINQSN*TTKSTRRRPAVRTSI 285
            ++ E+INQ N T +  + + A R+SI
Sbjct: 138 NEFEEKINQQNLTIEKLKIQQA-RSSI 163



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>AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 11C (EC 3.6.3.1)|
           (Fragment)
          Length = 347

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 171 YFFFLRIPRYITTWVYVLLCLFVSLFARV 85
           YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 285 YFVFAQMLCSVSTWLAIILLIFISLFPEI 313



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>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 580

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 170 TFFSFVFHVTLPLGFMYCFVYLLVYLRGSGDYTSSNVMCFSNNFVLLCRSICVI 9
           +FF F F      G   C+ + LVY   +GD+ SS++   +++   +  SIC +
Sbjct: 381 SFFLFFFST----GLTVCYSFRLVYYSMTGDFNSSSLHPLNDSGWTMLFSICFL 430


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,543,930
Number of Sequences: 219361
Number of extensions: 1038018
Number of successful extensions: 3410
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3356
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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