ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 4e-69
2ref|NM_187455.1| Oryza sativa (japonica cultivar-group), predic... 264 3e-67
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 222 9e-55
4gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 222 9e-55
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 222 9e-55
6gb|AY111492.1| Zea mays CL4538_1 mRNA sequence 68 3e-08
7gb|AF002109.3| Arabidopsis thaliana chromosome 2 clone T28M21 ma... 48 0.029
8gb|AY039858.1| Arabidopsis thaliana At2g39970/T28M21.13 mRNA, co... 48 0.029
9emb|BX821427.1|CNS0A9AS Arabidopsis thaliana Full-length cDNA Co... 48 0.029
10gb|BT003020.1| Arabidopsis thaliana At2g39970/T28M21.13 gene, co... 48 0.029
11dbj|AB047148.1| Arabidopsis thaliana mRNA for 36kDa-peroxisomal ... 48 0.029
12gb|AC122491.3| Mus musculus BAC clone RP24-390D3 from chromosome... 44 0.45
13gb|AC138642.10| Mus musculus chromosome 3, clone RP23-21O7, comp... 44 0.45
14emb|AL845324.16| Zebrafish DNA sequence from clone CH211-122L14 ... 44 0.45
15gb|AY578861.1| Drosophila mojavensis microsatellite DMOJ3040 seq... 42 1.8
16gb|AC146084.2| Pan troglodytes BAC clone RP43-56L21 from 7, comp... 42 1.8
17gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 42 1.8
18gb|AC074386.6| Homo sapiens BAC clone RP11-464H1 from 7, complet... 42 1.8
19emb|AL356318.7| Human DNA sequence from clone RP11-161E22 on chr... 42 1.8
20emb|CR628336.1| Legionella pneumophila str. Paris complete genome 42 1.8
21emb|CR749203.1| Homo sapiens mRNA; cDNA DKFZp686N1969 (from clon... 42 1.8
22ref|XM_935749.1| PREDICTED: Homo sapiens similar to rho guanine ... 42 1.8
23ref|XM_930437.1| PREDICTED: Homo sapiens similar to rho guanine ... 42 1.8
24gb|AC163675.4| Mus musculus BAC clone RP23-9G21 from chromosome ... 40 7.0
25gb|AC121319.9| Mus musculus chromosome 15, clone RP24-435O18, co... 40 7.0
26gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, com... 40 7.0
27gb|AC159310.3| Mus musculus BAC clone RP23-158N20 from chromosom... 40 7.0
28ref|XM_425981.1| PREDICTED: Gallus gallus similar to cardiac cal... 40 7.0
29gb|AC135117.3| Mus musculus BAC clone RP24-444P19 from chromosom... 40 7.0
30gb|AC132581.4| Mus musculus BAC clone RP24-390D8 from chromosome... 40 7.0
31emb|CR933523.10| Zebrafish DNA sequence from clone CH211-127H20 ... 40 7.0
32emb|AL365178.10| Human DNA sequence from clone RP11-454L1 on chr... 40 7.0
33gb|AC022773.17| Mus musculus chromosome X, clone RP23-157B8, com... 40 7.0
34gb|AC015756.18| Homo sapiens chromosome , clone RP11-1L12, compl... 40 7.0
35emb|AL031732.8|HS410I8 Human DNA sequence from clone RP3-410I8 o... 40 7.0
36emb|CR380839.1|PTB083D21 Pan troglodytes chromosome X BAC PTB-08... 40 7.0
37gb|DP000062.1| Sus scrofa target 117 genomic scaffold 40 7.0
38dbj|AK157224.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 7.0
39gb|AC010913.9| Homo sapiens BAC clone RP11-44N22 from 2, complet... 40 7.0
40dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 7.0
41dbj|AB114184.1| Silene latifolia CCLS96.1-J1 mRNA, male preferen... 40 7.0
42dbj|AB094078.1| Silene latifolia DNA, CCLS96.1 homolog and ScD05... 40 7.0
43emb|AL357614.5|HS367B10 Homo sapiens chromosome 9 BAC RP11-367B1... 40 7.0
44emb|Z68318.2|CET21B10 Caenorhabditis elegans Cosmid T21B10, comp... 40 7.0
45emb|AJ810454.1| Gavialis gangeticus complete mitochondrial genome 40 7.0
46emb|AJ288384.1|HUM288384 Hylocomiastrum umbratum atpB-rbcL non-c... 40 7.0
47emb|AL672060.9| Mouse DNA sequence from clone RP23-423L11 on chr... 40 7.0
48emb|AL805966.7| Mouse DNA sequence from clone RP23-305A10 on chr... 40 7.0 
>dbj|AK101498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043H11, full
            insert sequence
          Length = 1418

 Score =  270 bits (136), Expect = 4e-69
 Identities = 229/260 (88%)
 Strand = Plus / Minus

                                                                        
Query: 258  accttgatcatcttgagggctttgaaggcaacttctttaccaggctggtgtcaccggtta 317
            |||| ||||||||| | ||||| || || |||||||| || ||||||||||  |||||||
Sbjct: 1111 acctagatcatcttaatggcttcgatggtaacttcttaacaaggctggtgttgccggtta 1052

                                                                        
Query: 318  ccaagaatcgagcacctttcaccagctcctccttgatcataaaaaggagagcagaagcaa 377
            |||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1051 ccaataatcgagcgcccttcaccagttcctccttaatcataaaaaggagagcagaagcaa 992

                                                                        
Query: 378  aaacactctgtacaatttttgtgcccattcctttataaagccctgacaggccttcataat 437
            ||||||| ||||| |||||||||| |||||||||||||||||||||||  ||||||||| 
Sbjct: 991  aaacactttgtacgatttttgtgctcattcctttataaagccctgacaaaccttcataac 932

                                                                        
Query: 438  gcatcatttttgtgattgcatcaaacgtgcctttgtagcgatgcctcttgtcatcgtcga 497
            | ||||| |||||||| |||||||| |||||||||||||| |||||||||||||| || |
Sbjct: 931  gtatcatctttgtgatcgcatcaaatgtgcctttgtagcggtgcctcttgtcatcatcaa 872

                                
Query: 498  tcatttgcttcgactgaagt 517
            | |||||||||  |||||||
Sbjct: 871  ttatttgcttcacctgaagt 852
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>ref|NM_187455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1035

 Score =  264 bits (133), Expect = 3e-67
 Identities = 223/253 (88%)
 Strand = Plus / Minus

                                                                        
Query: 265  tcatcttgagggctttgaaggcaacttctttaccaggctggtgtcaccggttaccaagaa 324
            ||||||| | ||||| || || |||||||| || ||||||||||  ||||||||||| ||
Sbjct: 1035 tcatcttaatggcttcgatggtaacttcttaacaaggctggtgttgccggttaccaataa 976

                                                                        
Query: 325  tcgagcacctttcaccagctcctccttgatcataaaaaggagagcagaagcaaaaacact 384
            |||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 975  tcgagcgcccttcaccagttcctccttaatcataaaaaggagagcagaagcaaaaacact 916

                                                                        
Query: 385  ctgtacaatttttgtgcccattcctttataaagccctgacaggccttcataatgcatcat 444
             ||||| |||||||||| |||||||||||||||||||||||  ||||||||| | |||||
Sbjct: 915  ttgtacgatttttgtgctcattcctttataaagccctgacaaaccttcataacgtatcat 856

                                                                        
Query: 445  ttttgtgattgcatcaaacgtgcctttgtagcgatgcctcttgtcatcgtcgatcatttg 504
             |||||||| |||||||| |||||||||||||| |||||||||||||| || || |||||
Sbjct: 855  ctttgtgatcgcatcaaatgtgcctttgtagcggtgcctcttgtcatcatcaattatttg 796

                         
Query: 505  cttcgactgaagt 517
            ||||  |||||||
Sbjct: 795  cttcacctgaagt 783
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  222 bits (112), Expect = 9e-55
 Identities = 187/212 (88%)
 Strand = Plus / Minus

                                                                           
Query: 258     accttgatcatcttgagggctttgaaggcaacttctttaccaggctggtgtcaccggtta 317
               |||| ||||||||| | ||||| || || |||||||| || ||||||||||  |||||||
Sbjct: 8724873 acctagatcatcttaatggcttcgatggtaacttcttaacaaggctggtgttgccggtta 8724814

                                                                           
Query: 318     ccaagaatcgagcacctttcaccagctcctccttgatcataaaaaggagagcagaagcaa 377
               |||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 8724813 ccaataatcgagcgcccttcaccagttcctccttaatcataaaaaggagagcagaagcaa 8724754

                                                                           
Query: 378     aaacactctgtacaatttttgtgcccattcctttataaagccctgacaggccttcataat 437
               ||||||| ||||| |||||||||| |||||||||||||||||||||||  ||||||||| 
Sbjct: 8724753 aaacactttgtacgatttttgtgctcattcctttataaagccctgacaaaccttcataac 8724694

                                               
Query: 438     gcatcatttttgtgattgcatcaaacgtgcct 469
               | ||||| |||||||| |||||||| ||||||
Sbjct: 8724693 gtatcatctttgtgatcgcatcaaatgtgcct 8724662



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                  
Query: 467     cctttgtagcgatgcctcttgtcatcgtcgatcatttgcttcgactgaagt 517
               ||||||||||| |||||||||||||| || || |||||||||  |||||||
Sbjct: 8724486 cctttgtagcggtgcctcttgtcatcatcaattatttgcttcacctgaagt 8724436
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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score =  222 bits (112), Expect = 9e-55
 Identities = 187/212 (88%)
 Strand = Plus / Minus

                                                                         
Query: 258   accttgatcatcttgagggctttgaaggcaacttctttaccaggctggtgtcaccggtta 317
             |||| ||||||||| | ||||| || || |||||||| || ||||||||||  |||||||
Sbjct: 68524 acctagatcatcttaatggcttcgatggtaacttcttaacaaggctggtgttgccggtta 68465

                                                                         
Query: 318   ccaagaatcgagcacctttcaccagctcctccttgatcataaaaaggagagcagaagcaa 377
             |||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 68464 ccaataatcgagcgcccttcaccagttcctccttaatcataaaaaggagagcagaagcaa 68405

                                                                         
Query: 378   aaacactctgtacaatttttgtgcccattcctttataaagccctgacaggccttcataat 437
             ||||||| ||||| |||||||||| |||||||||||||||||||||||  ||||||||| 
Sbjct: 68404 aaacactttgtacgatttttgtgctcattcctttataaagccctgacaaaccttcataac 68345

                                             
Query: 438   gcatcatttttgtgattgcatcaaacgtgcct 469
             | ||||| |||||||| |||||||| ||||||
Sbjct: 68344 gtatcatctttgtgatcgcatcaaatgtgcct 68313



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 467   cctttgtagcgatgcctcttgtcatcgtcgatcatttgcttcgactgaagt 517
             ||||||||||| |||||||||||||| || || |||||||||  |||||||
Sbjct: 68137 cctttgtagcggtgcctcttgtcatcatcaattatttgcttcacctgaagt 68087
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  222 bits (112), Expect = 9e-55
 Identities = 187/212 (88%)
 Strand = Plus / Minus

                                                                           
Query: 258     accttgatcatcttgagggctttgaaggcaacttctttaccaggctggtgtcaccggtta 317
               |||| ||||||||| | ||||| || || |||||||| || ||||||||||  |||||||
Sbjct: 8722708 acctagatcatcttaatggcttcgatggtaacttcttaacaaggctggtgttgccggtta 8722649

                                                                           
Query: 318     ccaagaatcgagcacctttcaccagctcctccttgatcataaaaaggagagcagaagcaa 377
               |||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 8722648 ccaataatcgagcgcccttcaccagttcctccttaatcataaaaaggagagcagaagcaa 8722589

                                                                           
Query: 378     aaacactctgtacaatttttgtgcccattcctttataaagccctgacaggccttcataat 437
               ||||||| ||||| |||||||||| |||||||||||||||||||||||  ||||||||| 
Sbjct: 8722588 aaacactttgtacgatttttgtgctcattcctttataaagccctgacaaaccttcataac 8722529

                                               
Query: 438     gcatcatttttgtgattgcatcaaacgtgcct 469
               | ||||| |||||||| |||||||| ||||||
Sbjct: 8722528 gtatcatctttgtgatcgcatcaaatgtgcct 8722497



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                  
Query: 467     cctttgtagcgatgcctcttgtcatcgtcgatcatttgcttcgactgaagt 517
               ||||||||||| |||||||||||||| || || |||||||||  |||||||
Sbjct: 8722321 cctttgtagcggtgcctcttgtcatcatcaattatttgcttcacctgaagt 8722271
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>gb|AY111492.1| Zea mays CL4538_1 mRNA sequence
          Length = 669

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 97/118 (82%)
 Strand = Plus / Plus

                                                                       
Query: 400 gcccattcctttataaagccctgacaggccttcataatgcatcatttttgtgattgcatc 459
           |||||||||||| || | ||||||||| || |||||  | | ||| |||| ||  |||||
Sbjct: 399 gcccattcctttgtacatccctgacagaccctcatatcgtaccatctttgggaacgcatc 458

                                                                     
Query: 460 aaacgtgcctttgtagcgatgcctcttgtcatcgtcgatcatttgcttcgactgaagt 517
           ||  || ||||||||||||||||||||||||||||  ||||| ||||| | |||||||
Sbjct: 459 aagtgtacctttgtagcgatgcctcttgtcatcgttaatcatgtgctttgcctgaagt 516



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 265 tcatcttgagggctttgaaggcaacttctttaccaggctggtgtcaccggttaccaagaa 324
           ||||||||| | |||||| || |  ||||| ||||| || |||| ||| |||||||| | 
Sbjct: 264 tcatcttgatgactttgatggtagtttcttaaccagactagtgttaccagttaccaatag 323

                                           
Query: 325 tcgagcacctttcaccagctcctccttgatca 356
           ||||||||| ||||||||||||||||| ||||
Sbjct: 324 tcgagcacccttcaccagctcctccttaatca 355
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>gb|AF002109.3| Arabidopsis thaliana chromosome 2 clone T28M21 map CIC10A06, complete
             sequence
          Length = 108847

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                         
Query: 341   agctcctccttgatcataaaaaggagagcagaagcaaaaacactctgtacaatttttgtg 400
             ||||| ||||||||||| || || |  |||| ||| ||||| ||||| ||||| ||||||
Sbjct: 52733 agctcttccttgatcatgaacagaaccgcagcagctaaaacgctctgcacaatctttgtg 52792

                             
Query: 401   cccattcctttataaa 416
             | ||| ||||||||||
Sbjct: 52793 ctcatccctttataaa 52808
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>gb|AY039858.1| Arabidopsis thaliana At2g39970/T28M21.13 mRNA, complete cds
          Length = 1331

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                        
Query: 341  agctcctccttgatcataaaaaggagagcagaagcaaaaacactctgtacaatttttgtg 400
            ||||| ||||||||||| || || |  |||| ||| ||||| ||||| ||||| ||||||
Sbjct: 1098 agctcttccttgatcatgaacagaaccgcagcagctaaaacgctctgcacaatctttgtg 1039

                            
Query: 401  cccattcctttataaa 416
            | ||| ||||||||||
Sbjct: 1038 ctcatccctttataaa 1023
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>emb|BX821427.1|CNS0A9AS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL40ZG09 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1255

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                        
Query: 341  agctcctccttgatcataaaaaggagagcagaagcaaaaacactctgtacaatttttgtg 400
            ||||| ||||||||||| || || |  |||| ||| ||||| ||||| ||||| ||||||
Sbjct: 1074 agctcttccttgatcatgaacagaaccgcagcagctaaaacgctctgcacaatctttgtg 1015

                            
Query: 401  cccattcctttataaa 416
            | ||| ||||||||||
Sbjct: 1014 ctcatccctttataaa 999
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>gb|BT003020.1| Arabidopsis thaliana At2g39970/T28M21.13 gene, complete cds
          Length = 996

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 341 agctcctccttgatcataaaaaggagagcagaagcaaaaacactctgtacaatttttgtg 400
           ||||| ||||||||||| || || |  |||| ||| ||||| ||||| ||||| ||||||
Sbjct: 950 agctcttccttgatcatgaacagaaccgcagcagctaaaacgctctgcacaatctttgtg 891

                           
Query: 401 cccattcctttataaa 416
           | ||| ||||||||||
Sbjct: 890 ctcatccctttataaa 875
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>dbj|AB047148.1| Arabidopsis thaliana mRNA for 36kDa-peroxisomal membrane protein
           (PMP36), complete cds
          Length = 996

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 341 agctcctccttgatcataaaaaggagagcagaagcaaaaacactctgtacaatttttgtg 400
           ||||| ||||||||||| || || |  |||| ||| ||||| ||||| ||||| ||||||
Sbjct: 950 agctcttccttgatcatgaacagaaccgcagcagctaaaacgctctgcacaatctttgtg 891

                           
Query: 401 cccattcctttataaa 416
           | ||| ||||||||||
Sbjct: 890 ctcatccctttataaa 875
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>gb|AC122491.3| Mus musculus BAC clone RP24-390D3 from chromosome 3, complete sequence
          Length = 175092

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 19     ttattttttatctttcaacatt 40
              ||||||||||||||||||||||
Sbjct: 140894 ttattttttatctttcaacatt 140915
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>gb|AC138642.10| Mus musculus chromosome 3, clone RP23-21O7, complete sequence
          Length = 252108

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 19    ttattttttatctttcaacatt 40
             ||||||||||||||||||||||
Sbjct: 35591 ttattttttatctttcaacatt 35612
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>emb|AL845324.16| Zebrafish DNA sequence from clone CH211-122L14 in linkage group 20,
             complete sequence
          Length = 160892

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 432   cataatgcatcatttttgtgat 453
             ||||||||||||||||||||||
Sbjct: 47542 cataatgcatcatttttgtgat 47563
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>gb|AY578861.1| Drosophila mojavensis microsatellite DMOJ3040 sequence
          Length = 612

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 358 aaaaaggagagcagaagcaaa 378
           |||||||||||||||||||||
Sbjct: 541 aaaaaggagagcagaagcaaa 521
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>gb|AC146084.2| Pan troglodytes BAC clone RP43-56L21 from 7, complete sequence
          Length = 152170

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 359    aaaaggagagcagaagcaaaa 379
              |||||||||||||||||||||
Sbjct: 145860 aaaaggagagcagaagcaaaa 145880
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 64      gaatggctcaaatatcctatc 84
               |||||||||||||||||||||
Sbjct: 5448185 gaatggctcaaatatcctatc 5448205
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>gb|AC074386.6| Homo sapiens BAC clone RP11-464H1 from 7, complete sequence
          Length = 66610

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 358  aaaaaggagagcagaagcaaaaaca 382
            |||||||||| ||||||||||||||
Sbjct: 7949 aaaaaggagaacagaagcaaaaaca 7925
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>emb|AL356318.7| Human DNA sequence from clone RP11-161E22 on chromosome 9 Contains part
              of the TRPM3 gene for transient receptor potential cation
              channel subfamily M, member 3 (MLSN2, LTRPC3, FLJ11726) and
              a pseudogene similar to part of CDC91 cell division cycle
              91-like 1 (S. cerevisiae) (CDC91L1), complete sequence
          Length = 141339

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     atatcctatccaaatgtataa 95
              |||||||||||||||||||||
Sbjct: 123764 atatcctatccaaatgtataa 123784
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 331     acctttcaccagctcctccttgatc 355
               ||||||| |||||||||||||||||
Sbjct: 3049317 acctttcgccagctcctccttgatc 3049341
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>emb|CR749203.1| Homo sapiens mRNA; cDNA DKFZp686N1969 (from clone DKFZp686N1969)
          Length = 5058

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 358 aaaaaggagagcagaagcaaaaaca 382
           |||||||||| ||||||||||||||
Sbjct: 861 aaaaaggagaacagaagcaaaaaca 885
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>ref|XM_935749.1| PREDICTED: Homo sapiens similar to rho guanine nucleotide exchange
            factor 5 isoform 1, transcript variant 1 (LOC653855),
            mRNA
          Length = 5437

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 358  aaaaaggagagcagaagcaaaaaca 382
            |||||||||| ||||||||||||||
Sbjct: 1113 aaaaaggagaacagaagcaaaaaca 1137
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>ref|XM_930437.1| PREDICTED: Homo sapiens similar to rho guanine nucleotide exchange
            factor 5 isoform 1, transcript variant 1 (LOC653700),
            mRNA
          Length = 5437

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 358  aaaaaggagagcagaagcaaaaaca 382
            |||||||||| ||||||||||||||
Sbjct: 1113 aaaaaggagaacagaagcaaaaaca 1137
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>gb|AC163675.4| Mus musculus BAC clone RP23-9G21 from chromosome 6, complete sequence
          Length = 243690

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   aaaaggagagcagaagcaaa 378
             ||||||||||||||||||||
Sbjct: 41385 aaaaggagagcagaagcaaa 41404
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>gb|AC121319.9| Mus musculus chromosome 15, clone RP24-435O18, complete sequence
          Length = 159038

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   cctttataaagccctgacag 426
             ||||||||||||||||||||
Sbjct: 94384 cctttataaagccctgacag 94403
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>gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, complete sequence
          Length = 210059

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    cctttataaagccctgacag 426
              ||||||||||||||||||||
Sbjct: 190827 cctttataaagccctgacag 190808
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>gb|AC159310.3| Mus musculus BAC clone RP23-158N20 from chromosome 6, complete sequence
          Length = 222024

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    aaaaggagagcagaagcaaa 378
              ||||||||||||||||||||
Sbjct: 193234 aaaaggagagcagaagcaaa 193253



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   aaaaggagagcagaagcaaa 378
             ||||||||||||||||||||
Sbjct: 96531 aaaaggagagcagaagcaaa 96550
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>ref|XM_425981.1| PREDICTED: Gallus gallus similar to cardiac calcium channel
            beta-subunit CaB2a (splice variant of the gene CaB2
            (LOC428420), mRNA
          Length = 2079

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  agaatcatagtggtcaccgt 133
            ||||||||||||||||||||
Sbjct: 1854 agaatcatagtggtcaccgt 1835
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>gb|AC135117.3| Mus musculus BAC clone RP24-444P19 from chromosome 6, complete sequence
          Length = 166651

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   aaaaggagagcagaagcaaa 378
             ||||||||||||||||||||
Sbjct: 93254 aaaaggagagcagaagcaaa 93273
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>gb|AC132581.4| Mus musculus BAC clone RP24-390D8 from chromosome 6, complete sequence
          Length = 172240

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   aaaaggagagcagaagcaaa 378
             ||||||||||||||||||||
Sbjct: 19322 aaaaggagagcagaagcaaa 19303
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>emb|CR933523.10| Zebrafish DNA sequence from clone CH211-127H20 in linkage group 8,
             complete sequence
          Length = 112751

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 392   atttttgtgcccattcctttataaagcc 419
             |||||||||||||||  |||||||||||
Sbjct: 45828 atttttgtgcccatttgtttataaagcc 45801
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>emb|AL365178.10| Human DNA sequence from clone RP11-454L1 on chromosome 1 Contains the
             3' end of the CR1L gene for complement component (3b/4b)
             receptor 1-like and the 5' end of the MCP gene for
             membrane cofactor protein (CD46, trophoblast-lymphocyte
             cross-reactive antigen), complete sequence
          Length = 71858

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   tataatctcaaagtgtacat 152
             ||||||||||||||||||||
Sbjct: 21543 tataatctcaaagtgtacat 21524
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>gb|AC022773.17| Mus musculus chromosome X, clone RP23-157B8, complete sequence
          Length = 212031

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 156    cattatgtctaccatctgtaactt 179
              ||||||| ||||||||||||||||
Sbjct: 150183 cattatgactaccatctgtaactt 150160
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>gb|AC015756.18| Homo sapiens chromosome , clone RP11-1L12, complete sequence
          Length = 180105

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    tataatttttcccagtacctacaa 114
             |||||||||||| |||||||||||
Sbjct: 65459 tataatttttccaagtacctacaa 65482
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>emb|AL031732.8|HS410I8 Human DNA sequence from clone RP3-410I8 on chromosome 1p35.1-36.23
             Contains a tubulin-specific chaperone a (TBCA) pseudogene,
             complete sequence
          Length = 69017

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    aacttattttttatctttcaacat 39
             |||||||||||| |||||||||||
Sbjct: 27161 aacttattttttttctttcaacat 27138
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>emb|CR380839.1|PTB083D21 Pan troglodytes chromosome X BAC PTB-083D21, complete sequence
          Length = 186291

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     ttcctgaatatattttacat 58
              ||||||||||||||||||||
Sbjct: 103976 ttcctgaatatattttacat 103995
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>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      aattctcactaccaacttat 22
              ||||||||||||||||||||
Sbjct: 164608 aattctcactaccaacttat 164627
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>dbj|AK157224.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830207C03 product:unclassifiable, full
           insert sequence
          Length = 4346

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 aaaaggagagcagaagcaaa 378
           ||||||||||||||||||||
Sbjct: 515 aaaaggagagcagaagcaaa 496
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>gb|AC010913.9| Homo sapiens BAC clone RP11-44N22 from 2, complete sequence
          Length = 209161

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     tttttatctttcaacattcc 42
              ||||||||||||||||||||
Sbjct: 144315 tttttatctttcaacattcc 144296
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 65      aatggctcaaatatcctatc 84
               ||||||||||||||||||||
Sbjct: 2353445 aatggctcaaatatcctatc 2353426
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>dbj|AB114184.1| Silene latifolia CCLS96.1-J1 mRNA, male preferentially transcribed
           sequence
          Length = 1869

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 389 acaatttttgtgcccattcc 408
           ||||||||||||||||||||
Sbjct: 293 acaatttttgtgcccattcc 312
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>dbj|AB094078.1| Silene latifolia DNA, CCLS96.1 homolog and ScD05 homolog
          Length = 7800

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  acaatttttgtgcccattcc 408
            ||||||||||||||||||||
Sbjct: 2300 acaatttttgtgcccattcc 2319
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>emb|AL357614.5|HS367B10 Homo sapiens chromosome 9 BAC RP11-367B10, complete sequence
          Length = 182378

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    acttattttttatctttcaa 36
             ||||||||||||||||||||
Sbjct: 86680 acttattttttatctttcaa 86699
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>emb|Z68318.2|CET21B10 Caenorhabditis elegans Cosmid T21B10, complete sequence
          Length = 31801

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   ggttaccaagaatcgagcaccttt 336
             ||||||||||||||||| ||||||
Sbjct: 24472 ggttaccaagaatcgagaaccttt 24449
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>emb|AJ810454.1| Gavialis gangeticus complete mitochondrial genome
          Length = 17023

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 413   taaagccctgacaggccttcataa 436
             ||||||||||||| ||||||||||
Sbjct: 13533 taaagccctgacaagccttcataa 13556
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>emb|AJ288384.1|HUM288384 Hylocomiastrum umbratum atpB-rbcL non-coding spacer, clone 001
          Length = 599

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 atataatcagcaactaaccc 247
           ||||||||||||||||||||
Sbjct: 528 atataatcagcaactaaccc 547
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>emb|AL672060.9| Mouse DNA sequence from clone RP23-423L11 on chromosome X, complete
             sequence
          Length = 200698

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 156   cattatgtctaccatctgtaactt 179
             ||||||| ||||||||||||||||
Sbjct: 27029 cattatgactaccatctgtaactt 27006
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>emb|AL805966.7| Mouse DNA sequence from clone RP23-305A10 on chromosome 4, complete
             sequence
          Length = 178898

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aaatgtataatttttcccag 105
             ||||||||||||||||||||
Sbjct: 74361 aaatgtataatttttcccag 74342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,819,734
Number of Sequences: 3902068
Number of extensions: 5819734
Number of successful extensions: 126272
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126075
Number of HSP's gapped (non-prelim): 196
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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