ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20d03 |
|---|---|
| Clone Library Name | barley_pub |
>RUVB2_MOUSE (Q9WTM5) RuvB-like 2 (EC 3.6.1.-) (p47 protein)| Length = 462 Score = 84.0 bits (206), Expect = 2e-16 Identities = 39/67 (58%), Positives = 54/67 (80%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYMF 265 IG ETSLRYAIQLIT+A L C+KRKG V+++DI RVY LFLD RSTQ++ + Q ++F Sbjct: 392 IGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLF 451 Query: 264 SEVQGDS 244 +E++G++ Sbjct: 452 NELKGET 458
>RUVB2_HUMAN (Q9Y230) RuvB-like 2 (EC 3.6.1.-) (48-kDa TATA box-binding| protein-interacting protein) (48-kDa TBP-interacting protein) (TIP49b) (Repressing pontin 52) (Reptin 52) (51 kDa erythrocyte cytosolic protein) (ECP-51) (TIP60-associated protein 54- Length = 462 Score = 84.0 bits (206), Expect = 2e-16 Identities = 39/67 (58%), Positives = 54/67 (80%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYMF 265 IG ETSLRYAIQLIT+A L C+KRKG V+++DI RVY LFLD RSTQ++ + Q ++F Sbjct: 392 IGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLF 451 Query: 264 SEVQGDS 244 +E++G++ Sbjct: 452 NELKGET 458
>RUVB2_BRARE (P83571) RuvB-like 2 (EC 3.6.1.-) (Reptin) (zReptin)| Length = 463 Score = 81.3 bits (199), Expect = 1e-15 Identities = 38/64 (59%), Positives = 51/64 (79%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYMF 265 IG ETSLRYAIQLI++AGL C+KR+G V++EDI RVY LFLD RS+Q++ + Q ++F Sbjct: 393 IGQETSLRYAIQLISTAGLVCRKRRGTEVQVEDIKRVYSLFLDEARSSQYMKEYQDSFLF 452 Query: 264 SEVQ 253 +E Q Sbjct: 453 NETQ 456
>RUVB2_XENLA (Q9DE27) RuvB-like 2 (EC 3.6.1.-) (Reptin)| Length = 462 Score = 81.3 bits (199), Expect = 1e-15 Identities = 38/67 (56%), Positives = 53/67 (79%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYMF 265 IG ETSLRY++QLIT+A L C+KRKG V+++DI RVY LFLD RSTQ++ + Q +MF Sbjct: 392 IGLETSLRYSMQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFMF 451 Query: 264 SEVQGDS 244 +E++ D+ Sbjct: 452 NEMKTDT 458
>RUVB2_USTMA (Q4P6N7) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 476 Score = 69.3 bits (168), Expect = 4e-12 Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM- 268 + +ETSLRYAI LIT+A LA ++RK VE+ D+ RVY+LF+D KRS Q+L + +M Sbjct: 388 MASETSLRYAINLITTANLAAKRRKADEVEVADVRRVYNLFVDEKRSVQYLKEHAEQFMN 447 Query: 267 FSEVQGDSDGDDAMQP*TG 211 S+ GD DG ++ P G Sbjct: 448 ESDEYGDIDGLNSGAPIIG 466
>RUVB2_SCHPO (O94692) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 465 Score = 60.8 bits (146), Expect = 1e-09 Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYMF 265 IG ETSLRYA+ LI+S+ KRK +E DI RVY LFLD KRS ++L + +Y+ Sbjct: 387 IGQETSLRYALLLISSSNQVALKRKSATIEESDIRRVYELFLDQKRSVEYLEEYGKNYIT 446 Query: 264 S---EVQGDSDGDDAMQ 223 G D AMQ Sbjct: 447 ENEWSASGAQDNAVAMQ 463
>RUVB2_KLULA (Q6CT29) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 467 Score = 57.4 bits (137), Expect = 2e-08 Identities = 28/59 (47%), Positives = 40/59 (67%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 IG+ETSLRY+ LI+ + QKRK VE++D+ R Y LFLD RS +F+ + +S Y+ Sbjct: 388 IGSETSLRYSSNLISVSQQIAQKRKSNTVEVKDVERAYLLFLDSARSVKFVQEFESQYI 446
>RUVB2_NEUCR (Q873C7) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 481 Score = 56.6 bits (135), Expect = 3e-08 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 6/78 (7%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYMF 265 IG E LRYA LIT++ L C KRK K V +ED+ R + LF D RS +F+ +S+ + Sbjct: 391 IGAEAGLRYASNLITTSQLICAKRKAKQVGVEDVQRSFKLFYDPARSVKFVQESEKRLIG 450 Query: 264 SE------VQGDSDGDDA 229 S+ V G + G+ A Sbjct: 451 SDGVVDFRVNGGATGEPA 468
>RUVB2_YARLI (Q6C3X6) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 424 Score = 56.6 bits (135), Expect = 3e-08 Identities = 28/56 (50%), Positives = 35/56 (62%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQS 277 IG +TSLRY LI+ + + QKRK V +ED+ R Y LFLD RS QFL S + Sbjct: 347 IGADTSLRYGSNLISVSHMLAQKRKASSVGLEDVKRAYSLFLDTARSVQFLSSSNN 402
>RUVB2_YEAST (Q12464) RuvB-like protein 2 (EC 3.6.1.-) (RUVBL2) (TIP49b homolog)| (TIP49-homology protein 2) Length = 471 Score = 56.2 bits (134), Expect = 4e-08 Identities = 27/58 (46%), Positives = 38/58 (65%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 G ETSLRY+ LI+ A KRK VE+ED+ R Y LFLD RS +++ +++S Y+ Sbjct: 391 GVETSLRYSSNLISVAQQIAMKRKNNTVEVEDVKRAYLLFLDSARSVKYVQENESQYI 448
>RUVB2_CANAL (Q5AGZ9) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 498 Score = 55.5 bits (132), Expect = 6e-08 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM- 268 IG ETSLRYA LI+ + K+K V+++DI R Y LFLD RS Q+L ++ Y+ Sbjct: 394 IGQETSLRYAANLISVSQQIALKKKNNTVDLQDIKRAYMLFLDSDRSVQYLEENADQYID 453 Query: 267 -FSEVQ-GDSDGDDAMQP 220 + V G D + QP Sbjct: 454 DYGRVTIGQESTDGSTQP 471
>RUVB2_EMENI (Q5BGK3) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 452 Score = 54.7 bits (130), Expect = 1e-07 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 7/74 (9%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFL-------ID 286 IG E++LRYA +IT++ L QKRK K V ++D+ R Y LF D RS +F+ I Sbjct: 375 IGQESNLRYASNIITTSHLLSQKRKAKEVSVDDVQRSYRLFYDPARSVKFVNQYEQRFIG 434 Query: 285 SQSDYMFSEVQGDS 244 Q + F+ GD+ Sbjct: 435 DQGNVNFTASNGDA 448
>RUVB2_ASHGO (Q755G5) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 469 Score = 53.5 bits (127), Expect = 2e-07 Identities = 27/59 (45%), Positives = 38/59 (64%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 IG ETSLRY+ LI + QKRK V+++D+ R Y LFLD RS ++L + +S Y+ Sbjct: 389 IGGETSLRYSSNLIAVSQQIAQKRKSSSVDVQDVKRAYLLFLDSTRSAKYLQEYESRYI 447
>RUVB2_GIBZE (Q4I948) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 464 Score = 52.8 bits (125), Expect = 4e-07 Identities = 26/55 (47%), Positives = 35/55 (63%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQ 280 IG E LRYA LIT++ L KRK K VE+ D+ R + LF D RS +F+ +S+ Sbjct: 382 IGQEAGLRYASNLITTSQLVSAKRKAKQVEVSDVQRSFQLFYDPARSIKFVAESE 436
>RUVB2_ASPFU (Q4WKH9) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 469 Score = 52.8 bits (125), Expect = 4e-07 Identities = 25/51 (49%), Positives = 35/51 (68%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFL 292 IG E++LRYA +IT++ L QKRK K V ++D+ R Y LF D RS +F+ Sbjct: 391 IGQESNLRYASNIITTSHLLSQKRKAKEVSIDDVQRSYRLFYDPARSVKFV 441
>RUVB2_CANGA (Q6FSF1) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 476 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/58 (44%), Positives = 36/58 (62%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 G ETSLRY+ LI+ A KRK VE+ D+ + Y LFLD RS +F+ ++Q Y+ Sbjct: 392 GGETSLRYSSNLISVAQQIALKRKSNTVEVADVKKAYLLFLDSSRSVKFVQENQDQYI 449
>RUVB1_BRARE (Q8AWW7) RuvB-like 1 (EC 3.6.1.-) (Pontin) (zPontin)| Length = 456 Score = 52.0 bits (123), Expect = 7e-07 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 IGT+T+LRYA+QL+T A L + + +VVE E + + LF D K S + L D + +M Sbjct: 397 IGTKTTLRYAVQLLTPASLLARVQGREVVEKEHVEEINELFYDAKSSAKILQDQHTKFM 455
>RUVB2_DEBHA (Q6BSB8) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 480 Score = 52.0 bits (123), Expect = 7e-07 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 14/88 (15%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKR--------STQFLI 289 IG ETSLRYA LI+ + KR+ V++ DI R Y LFLD R STQF+ Sbjct: 391 IGQETSLRYASNLISVSQQIALKRRSNSVDLPDIKRSYMLFLDSDRSVQYLEEFSTQFID 450 Query: 288 DS------QSDYMFSEVQGDSDGDDAMQ 223 DS +D + +G ++G+D M+ Sbjct: 451 DSGNVTFGTNDASVKQTKGAANGEDKME 478
>RUVB2_CRYNE (Q5KND8) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 463 Score = 51.6 bits (122), Expect = 9e-07 Identities = 26/69 (37%), Positives = 41/69 (59%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYMF 265 +G +TSLRY++ LI + L Q+RK ++ED+ Y F DV+RS Q+ ++ S MF Sbjct: 391 MGIQTSLRYSLNLIAPSSLLAQRRKSPQTDVEDVRMAYKYFCDVERSAQYAKET-SGMMF 449 Query: 264 SEVQGDSDG 238 E + + G Sbjct: 450 GETEEINGG 458
>RUVB1_YEAST (Q03940) RuvB-like protein 1 (EC 3.6.1.-) (RUVBL1) (TIP49a homolog)| (TIP49-homology protein 1) Length = 463 Score = 51.6 bits (122), Expect = 9e-07 Identities = 24/59 (40%), Positives = 40/59 (67%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 +GTETSLRYA+QL+ G+ Q K + + D++ LFLD KRST+ ++++ ++Y+ Sbjct: 406 MGTETSLRYALQLLAPCGILAQTSNRKEIVVNDVNEAKLLFLDAKRSTK-ILETSANYL 463
>RUVB1_RAT (P60123) RuvB-like 1 (EC 3.6.1.-) (49-kDa TATA box-binding| protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (DNA helicase p50) Length = 456 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 IGT+T+LRY++QL+T A L + +E E + + LF D K S + L D Q YM Sbjct: 397 IGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455
>RUVB1_MOUSE (P60122) RuvB-like 1 (EC 3.6.1.-) (49-kDa TATA box-binding| protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (DNA helicase p50) Length = 456 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 IGT+T+LRY++QL+T A L + +E E + + LF D K S + L D Q YM Sbjct: 397 IGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455
>RUVB1_HUMAN (Q9Y265) RuvB-like 1 (EC 3.6.1.-) (49-kDa TATA box-binding| protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) (ECP-54) (TIP60-associ Length = 456 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 IGT+T+LRY++QL+T A L + +E E + + LF D K S + L D Q YM Sbjct: 397 IGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455
>RUVB1_KLULA (Q6CQA9) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 457 Score = 47.4 bits (111), Expect = 2e-05 Identities = 22/56 (39%), Positives = 35/56 (62%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQS 277 +GTETSLRY +QL++ +G+ + + + D+ LFLD KRST+ L S++ Sbjct: 400 LGTETSLRYVLQLLSPSGIIAKIANRAEISVADVEEAKLLFLDAKRSTKILEQSEN 455
>RUVB1_ASHGO (Q750R1) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 459 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/59 (40%), Positives = 38/59 (64%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 +G++ SLRYA+QL+T AG+ + + DI LFLD KRST+ +++S S+Y+ Sbjct: 402 MGSDMSLRYALQLLTPAGILAATAGRTEILLSDIEEAKMLFLDAKRSTK-ILESNSNYL 459
>RUVB1_XENLA (Q9DE26) RuvB-like 1 (EC 3.6.1.-) (Pontin)| Length = 456 Score = 47.4 bits (111), Expect = 2e-05 Identities = 22/59 (37%), Positives = 34/59 (57%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 IGT+T+LRY++QL+T A L + +E E + + LF D K S + L + Q +M Sbjct: 397 IGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEINELFYDAKSSAKILAEQQEKFM 455
>RUVB1_CANGA (Q6FU78) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 457 Score = 45.8 bits (107), Expect = 5e-05 Identities = 22/54 (40%), Positives = 35/54 (64%) Frame = -3 Query: 444 IGTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDS 283 + T TSLRYA+QL++ AG+ + + ++DI+ LF+D KRST+ L +S Sbjct: 400 MATHTSLRYALQLLSPAGILSSTAGRQKITIDDINEAKMLFIDAKRSTKILENS 453
>RUVB1_CANAL (Q5A0W7) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 458 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/55 (40%), Positives = 34/55 (61%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQS 277 G TSLRYA+QL+T AG+ + ++DI LFLD +RST+ L ++++ Sbjct: 402 GLTTSLRYAVQLLTPAGVLSTTAGRSEITVQDIEECEFLFLDSRRSTKVLQETKT 456
>RUVB1_SCHPO (Q9C0X6) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 456 Score = 43.1 bits (100), Expect = 3e-04 Identities = 22/58 (37%), Positives = 33/58 (56%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 G+ TSLRY IQL+T + K + ++DI LFLD +RS Q ++ S S ++ Sbjct: 399 GSRTSLRYVIQLLTPVSIIASLHGNKEIGVQDIEECNDLFLDARRSAQ-VVKSSSGFL 455
>RUVB1_YARLI (Q6CB52) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 453 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRS 304 G TSLRY +QL++ AG+ + VVE++D+ LFLD RS Sbjct: 399 GARTSLRYGLQLLSPAGVLAKSEGRDVVEVKDVEECESLFLDATRS 444
>RUVB1_CRYNE (Q5KPZ8) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 484 Score = 42.4 bits (98), Expect = 5e-04 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGK-VVEMEDISRVYHLFLDVKRSTQFL 292 G +SLRYA+QL+T AG+ K KGK V + D+ + LFLD KRS L Sbjct: 425 GERSSLRYALQLLTPAGIV-SKNKGKGEVGVADVEELGELFLDAKRSAGVL 474
>RUVB1_NEUCR (Q8WZS3) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 458 Score = 39.7 bits (91), Expect = 0.003 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQ 280 G SLRY +QL+T A + + ++++D++ LFLD +RS L Q Sbjct: 399 GVRISLRYCLQLLTPASILAKVNGRNEIDVQDVAECEDLFLDARRSAALLSSEQ 452
>RUVB1_GIBZE (Q4ICA8) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 458 Score = 38.1 bits (87), Expect = 0.010 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFL 292 G SLRY +QL+T A + + ++++D++ LFLD RS L Sbjct: 399 GVRISLRYCLQLLTPASILAKANGRSQIDVQDVAECEDLFLDASRSAALL 448
>RUVB1_DEBHA (Q6BI60) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 457 Score = 38.1 bits (87), Expect = 0.010 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQ 280 G SLRYA+QL+ AG+ + + EDI LFLD +RS + L +++ Sbjct: 401 GINNSLRYALQLLAPAGVLSKTAGRNEITSEDIEECEILFLDSRRSIKILEETK 454
>RUVB1_ASPFU (Q4WPW8) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 458 Score = 37.4 bits (85), Expect = 0.017 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = -3 Query: 441 GTETSLRYAIQLITSAG-LACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYM 268 G++ SLRYA+QL+T A LA + +E DI+ LFLD KRS + ++ Sbjct: 399 GSKVSLRYALQLLTPASILARVNGRPGGIEEADIAECEDLFLDAKRSAAIVSQDSEKFL 457
>CDC64_HALSA (Q9HN34) Cell division control protein 6 homolog 4 (CDC6 homolog 4)| Length = 374 Score = 36.2 bits (82), Expect = 0.038 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = -3 Query: 426 LRYAIQLITSAGLACQKRKGKVVEMEDISRVYH--LFLDVKRSTQFLIDSQSDYM--FSE 259 LR I ++ AGL + R K VEMED+ VY + + R+ L D++ + +E Sbjct: 249 LRVGIDVLRRAGLHAESRASKTVEMEDVDAVYEDAKHVHLSRTLAALSDNERALVRTVAE 308 Query: 258 VQGDSDGD 235 +GD GD Sbjct: 309 QEGDRAGD 316
>RUVB1_EMENI (Q5BBV9) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 460 Score = 35.4 bits (80), Expect = 0.065 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = -3 Query: 441 GTETSLRYAIQLITSAG-LACQKRKGKVVEMEDISRVYHLFLDVKRS 304 G++ SLRYA+QL+T A LA + +E D++ LFLD KRS Sbjct: 399 GSKVSLRYALQLLTPASILARVNGRPGGIEEADVTECEDLFLDSKRS 445
>RUVB1_USTMA (Q4P112) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 488 Score = 35.0 bits (79), Expect = 0.084 Identities = 15/51 (29%), Positives = 30/51 (58%) Frame = -3 Query: 441 GTETSLRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLI 289 G +SLR+A+QL++ + + + + ++DI LF+D +RS + L+ Sbjct: 423 GVSSSLRFALQLLSPSSILAKTAGRSEITIKDIVEANELFIDARRSAKVLM 473
>CDC65_HALMA (Q5UYP1) Cell division control protein 6 homolog 5 (CDC6 homolog 5)| Length = 375 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/66 (31%), Positives = 28/66 (42%) Frame = -3 Query: 426 LRYAIQLITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLIDSQSDYMFSEVQGD 247 LR I L+ AG+ + R + VE ED+ Y V S + S S+ EV Sbjct: 250 LRVGIDLLRRAGMNAEMRASRSVETEDVEAAYDKSKYVHLSRRLRELSDSETALVEVIAA 309 Query: 246 SDGDDA 229 DG A Sbjct: 310 HDGQQA 315
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 29.3 bits (64), Expect = 4.6 Identities = 10/40 (25%), Positives = 19/40 (47%) Frame = -1 Query: 272 TCSVKCKGIQMGMTPCSPRREFLQCNCGLVCMARVSCGFC 153 TCS +C + C ++ + +C C +++ CG C Sbjct: 1293 TCSCECPADKAKPASCGDKKSWNDDSCSCQCKSKMPCGGC 1332
>LACT_LACCA (P24401) Transcription antiterminator lacT| Length = 292 Score = 28.9 bits (63), Expect = 6.0 Identities = 10/40 (25%), Positives = 23/40 (57%) Frame = -3 Query: 408 LITSAGLACQKRKGKVVEMEDISRVYHLFLDVKRSTQFLI 289 ++ G+A QKR+G V+ + I ++++L + R + + Sbjct: 24 VVRGRGIAFQKRRGDVIPTKQIEKIFYLANETSRQNLYFL 63
>YBGG_ECOLI (P54746) Hypothetical protein ybgG| Length = 877 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 5 LNGQA*DGRFLRIHSTVKSPVTAVNIAHS 91 L G+ DG+++R+H T+ S + IAH+ Sbjct: 268 LKGEFIDGKYMRVHRTIGSTRMDIKIAHA 296 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,280,510 Number of Sequences: 219361 Number of extensions: 1085692 Number of successful extensions: 2511 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 2467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2508 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
