>gb|BT018789.1| Zea mays clone EL01N0527G05.d mRNA sequence
          Length = 1818

 Score =  129 bits (65), Expect = 8e-27
 Identities = 155/185 (83%)
 Strand = Plus / Minus

                                                                        
Query: 224  tgcatggcgtcatccccatctgaatccccttgcacttcactgaacatgtagtcactctgg 283
            ||||||||||| || |||||||  | |||  |||||||  |||||||||| |  ||||||
Sbjct: 1556 tgcatggcgtcctctccatctgcttgccccggcacttcgttgaacatgtactggctctgg 1497

                                                                        
Query: 284  ctgtcgatcaagaactgtgtcgatctcttcacgtccagaaacaggtggtacacccggctt 343
               || |||| | |||| ||||||| |||||||||||| ||||| |||||||||||||| 
Sbjct: 1496 tactccatcaggtactgcgtcgatcgcttcacgtccaggaacagctggtacacccggcta 1437

                                                                        
Query: 344  atgtcctccatctccaccaccttgcccttgcgcttctggcaggccaggccggcagaagtg 403
            |||||||||||||| |||||||| ||||||||| |||||||||| ||  ||||||| |||
Sbjct: 1436 atgtcctccatctcgaccaccttccccttgcgcctctggcaggctagcgcggcagatgtg 1377

                 
Query: 404  ataag 408
            |||||
Sbjct: 1376 ataag 1372

>gb|AY110027.1| Zea mays CL19120_1 mRNA sequence
          Length = 785

 Score =  119 bits (60), Expect = 8e-24
 Identities = 99/112 (88%)
 Strand = Plus / Plus

                                                                       
Query: 297 actgtgtcgatctcttcacgtccagaaacaggtggtacacccggcttatgtcctccatct 356
           |||| ||||| | |||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 271 actgcgtcgaccgcttcacgtccaggaacagctggtacacccggctaatgtcctccatct 330

                                                               
Query: 357 ccaccaccttgcccttgcgcttctggcaggccaggccggcagaagtgataag 408
           | |||||||| ||||||||| |||||||||| ||  ||||||| ||||||||
Sbjct: 331 cgaccaccttccccttgcgcctctggcaggctagcgcggcagatgtgataag 382

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                           
Query: 290     atcaagaactgtgtcgatctcttcacgtccagaaacaggtggtacacccggcttatgtcc 349
               |||||| |||| ||||||||||| |||||||| ||||| ||||| |||| |||||| |||
Sbjct: 4399322 atcaagtactgcgtcgatctcttgacgtccaggaacagctggtagaccctgcttatatcc 4399381

                                                  
Query: 350     tccatctccaccaccttgcccttgcgcttctggca 384
               ||||||||||| ||||| |||||||| ||||||||
Sbjct: 4399382 tccatctccacaaccttacccttgcgtttctggca 4399416

>dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0470C02
          Length = 158849

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                         
Query: 290   atcaagaactgtgtcgatctcttcacgtccagaaacaggtggtacacccggcttatgtcc 349
             |||||| |||| ||||||||||| |||||||| ||||| ||||| |||| |||||| |||
Sbjct: 47003 atcaagtactgcgtcgatctcttgacgtccaggaacagctggtagaccctgcttatatcc 47062

                                                
Query: 350   tccatctccaccaccttgcccttgcgcttctggca 384
             ||||||||||| ||||| |||||||| ||||||||
Sbjct: 47063 tccatctccacaaccttacccttgcgtttctggca 47097

>dbj|AK105241.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-D06, full
            insert sequence
          Length = 1800

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                        
Query: 290  atcaagaactgtgtcgatctcttcacgtccagaaacaggtggtacacccggcttatgtcc 349
            |||||| |||| ||||||||||| |||||||| ||||| ||||| |||| |||||| |||
Sbjct: 1528 atcaagtactgcgtcgatctcttgacgtccaggaacagctggtagaccctgcttatatcc 1469

                                               
Query: 350  tccatctccaccaccttgcccttgcgcttctggca 384
            ||||||||||| ||||| |||||||| ||||||||
Sbjct: 1468 tccatctccacaaccttacccttgcgtttctggca 1434

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                            
Query: 290      atcaagaactgtgtcgatctcttcacgtccagaaacaggtggtacacccggcttatgtcc 349
                |||||| |||| | |||||||||||||||||| || || ||||| |||| |||||| |||
Sbjct: 23471494 atcaagtactgcgccgatctcttcacgtccaggaagagctggtagaccctgcttatatcc 23471435

                           
Query: 350      tccatctccac 360
                |||||||||||
Sbjct: 23471434 tccatctccac 23471424

>dbj|AP004185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1301_C12
          Length = 128396

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                         
Query: 290   atcaagaactgtgtcgatctcttcacgtccagaaacaggtggtacacccggcttatgtcc 349
             |||||| |||| | |||||||||||||||||| || || ||||| |||| |||||| |||
Sbjct: 31887 atcaagtactgcgccgatctcttcacgtccaggaagagctggtagaccctgcttatatcc 31828

                        
Query: 350   tccatctccac 360
             |||||||||||
Sbjct: 31827 tccatctccac 31817

>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453G03
          Length = 144480

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                         
Query: 290   atcaagaactgtgtcgatctcttcacgtccagaaacaggtggtacacccggcttatgtcc 349
             |||||| |||| | |||||||||||||||||| || || ||||| |||| |||||| |||
Sbjct: 91391 atcaagtactgcgccgatctcttcacgtccaggaagagctggtagaccctgcttatatcc 91332

                        
Query: 350   tccatctccac 360
             |||||||||||
Sbjct: 91331 tccatctccac 91321

>gb|AF088847.1|AF088847 Capsicum chinense cinnamic acid 4-hydroxylase (Ca4h) mRNA, partial
           cds
          Length = 1654

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 292 caagaactgtgtcgatctcttcacg 316
           |||||||||||||||||||||||||
Sbjct: 913 caagaactgtgtcgatctcttcacg 889

>ref|XM_533625.2| PREDICTED: Canis familiaris similar to RuvB-like 2 (48-kDa TATA
            box-binding protein-interacting protein) (48-kDa
            TBP-interacting protein) (TIP49b) (Repressing pontin 52)
            (Reptin 52) (51 kDa erythrocyte cytosolic protein)
            (ECP-51) (TIP60-associated protein 54-beta)
            (TAP54-beta... (LOC476418), mRNA
          Length = 1479

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 366  tgcccttgcgcttctggcaggccaggccggcagaagtgataagctggatcgcgta 420
            |||||||||| ||| ||||  |||||| |||||  |||||||||||||| |||||
Sbjct: 1255 tgcccttgcgtttccggcacaccaggctggcagctgtgataagctggatggcgta 1201

>gb|AC119828.9| Mus musculus chromosome 10, clone RP23-186A24, complete sequence
          Length = 205915

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    tcaggatacactcaactgtga 56
             |||||||||||||||||||||
Sbjct: 98667 tcaggatacactcaactgtga 98647

>gb|AF212318.1|AF212318 Capsicum annuum cinnamic acid 4-hydroxylase (C4H) mRNA, complete cds
          Length = 1775

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 292  caagaactgtgtcgatctcttcacg 316
            ||||||||| |||||||||||||||
Sbjct: 1059 caagaactgcgtcgatctcttcacg 1035

>ref|XM_534392.2| PREDICTED: Canis familiaris similar to Nuclear receptor coactivator 6
            (Amplified in breast cancer-3 protein) (Cancer-amplified
            transcriptional coactivator ASC-2) (Activating signal
            cointegrator-2) (ASC-2) (Peroxisome
            proliferator-activated receptor-interacting protein)
            (PPAR-..., transcript variant 1 (LOC477202), mRNA
          Length = 6872

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 347  tcctccatctccaccaccttgccc 370
            ||||||||||||||| ||||||||
Sbjct: 4895 tcctccatctccacccccttgccc 4918

>emb|CT009637.4| Mouse DNA sequence from clone RP23-131G16 on chromosome 17, complete
              sequence
          Length = 222316

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    tatgtcctccatctccacca 362
              ||||||||||||||||||||
Sbjct: 178598 tatgtcctccatctccacca 178617

>gb|AC123848.4| Mus musculus BAC clone RP23-459I1 from chromosome 5, complete sequence
          Length = 184292

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   gtccagaaacaggtggtaca 335
             ||||||||||||||||||||
Sbjct: 70642 gtccagaaacaggtggtaca 70661

>gb|AC124424.4| Mus musculus BAC clone RP24-230J3 from chromosome 2, complete sequence
          Length = 190802

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   ccttgcacttcactgaacat 270
             ||||||||||||||||||||
Sbjct: 15827 ccttgcacttcactgaacat 15808

>emb|BX537691.1|HSM805764 Homo sapiens genomic DNA; cDNA DKFZp686E03111 (from clone
           DKFZp686E03111)
          Length = 5469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 tcctccatctccaccacctt 366
           ||||||||||||||||||||
Sbjct: 929 tcctccatctccaccacctt 910

>gb|AC130886.3| Homo sapiens X BAC RP11-361B16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 79337

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   tcctccatctccaccacctt 366
             ||||||||||||||||||||
Sbjct: 72226 tcctccatctccaccacctt 72245

>gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, complete sequence
          Length = 206801

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   tatgtcctccatctccacca 362
             ||||||||||||||||||||
Sbjct: 63882 tatgtcctccatctccacca 63863

>dbj|AK147954.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
           clone:G270114L09 product:Hermansky-Pudlak syndrome 4
           homolog (human), full insert sequence
          Length = 3278

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 316 gtccagaaacaggtggtaca 335
           ||||||||||||||||||||
Sbjct: 99  gtccagaaacaggtggtaca 80

>ref|XM_681144.1| PREDICTED: Danio rerio similar to ubiquitin specific protease 32
            (LOC557981), mRNA
          Length = 3993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 345  tgtcctccatctccaccacc 364
            ||||||||||||||||||||
Sbjct: 3569 tgtcctccatctccaccacc 3588

>dbj|AK008458.1| Mus musculus adult male small intestine cDNA, RIKEN full-length
           enriched library, clone:2010205O06
           product:unclassifiable, full insert sequence
          Length = 378

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 316 gtccagaaacaggtggtaca 335
           ||||||||||||||||||||
Sbjct: 129 gtccagaaacaggtggtaca 110

>emb|AL929070.15| Mouse DNA sequence from clone RP23-199L4 on chromosome 2, complete
             sequence
          Length = 143861

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   ccttgcacttcactgaacat 270
             ||||||||||||||||||||
Sbjct: 42121 ccttgcacttcactgaacat 42140

>gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complete sequence
          Length = 171663

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    gtccagaaacaggtggtaca 335
              ||||||||||||||||||||
Sbjct: 130644 gtccagaaacaggtggtaca 130663


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,090,783
Number of Sequences: 3902068
Number of extensions: 3090783
Number of successful extensions: 54554
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54490
Number of HSP's gapped (non-prelim): 63
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)