>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  113 bits (57), Expect = 5e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                           
Query: 215     taattctgaccaacaaagggtagcaatgctcctcattatagttgggccacgatgtgtcat 274
               ||||||| ||||| | ||||||||| ||||| ||||| ||||||||||| ||| ||| ||
Sbjct: 7576981 taattctaaccaatagagggtagcagtgctcttcattgtagttgggccaggatctgttat 7576922

                                                                           
Query: 275     ctcctgccacatagctttcgtgcagattccagacagtgggatcataattctctatcaact 334
               |  | |  |||||  ||| ||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 7576921 catccgatacatattttttgtgcatattccatacagtgggatcatacttctctatcaact 7576862

                                                                           
Query: 335     cataacataaaccatattctttgattgtttctaggaacttgttgagtgaatcacctctcc 394
               || || | |||||||  | ||| |||  ||||||||| ||| |||||||||| |||||| 
Sbjct: 7576861 cacaagacaaaccattctttttaattacttctaggaatttgctgagtgaatcgcctctct 7576802

                        
Query: 395     ttgggctca 403
               |||||||||
Sbjct: 7576801 ttgggctca 7576793

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  113 bits (57), Expect = 5e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                           
Query: 215     taattctgaccaacaaagggtagcaatgctcctcattatagttgggccacgatgtgtcat 274
               ||||||| ||||| | ||||||||| ||||| ||||| ||||||||||| ||| ||| ||
Sbjct: 7574816 taattctaaccaatagagggtagcagtgctcttcattgtagttgggccaggatctgttat 7574757

                                                                           
Query: 275     ctcctgccacatagctttcgtgcagattccagacagtgggatcataattctctatcaact 334
               |  | |  |||||  ||| ||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 7574756 catccgatacatattttttgtgcatattccatacagtgggatcatacttctctatcaact 7574697

                                                                           
Query: 335     cataacataaaccatattctttgattgtttctaggaacttgttgagtgaatcacctctcc 394
               || || | |||||||  | ||| |||  ||||||||| ||| |||||||||| |||||| 
Sbjct: 7574696 cacaagacaaaccattctttttaattacttctaggaatttgctgagtgaatcgcctctct 7574637

                        
Query: 395     ttgggctca 403
               |||||||||
Sbjct: 7574636 ttgggctca 7574628

>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0042A11,
              complete sequence
          Length = 113049

 Score =  113 bits (57), Expect = 5e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                          
Query: 215    taattctgaccaacaaagggtagcaatgctcctcattatagttgggccacgatgtgtcat 274
              ||||||| ||||| | ||||||||| ||||| ||||| ||||||||||| ||| ||| ||
Sbjct: 105877 taattctaaccaatagagggtagcagtgctcttcattgtagttgggccaggatctgttat 105818

                                                                          
Query: 275    ctcctgccacatagctttcgtgcagattccagacagtgggatcataattctctatcaact 334
              |  | |  |||||  ||| ||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 105817 catccgatacatattttttgtgcatattccatacagtgggatcatacttctctatcaact 105758

                                                                          
Query: 335    cataacataaaccatattctttgattgtttctaggaacttgttgagtgaatcacctctcc 394
              || || | |||||||  | ||| |||  ||||||||| ||| |||||||||| |||||| 
Sbjct: 105757 cacaagacaaaccattctttttaattacttctaggaatttgctgagtgaatcgcctctct 105698

                       
Query: 395    ttgggctca 403
              |||||||||
Sbjct: 105697 ttgggctca 105689

>gb|AC158537.2| Mus musculus BAC clone RP23-2H7 from chromosome 14, complete sequence
          Length = 204554

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 126   ctgttgtatttcatagtgaagaataacta 154
             |||||| || |||||||||||||||||||
Sbjct: 32012 ctgttgcatatcatagtgaagaataacta 32040

>gb|AC162792.5| Mus musculus chromosome 7, clone RP24-187H10, complete sequence
          Length = 170668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 197   aatcaaaatgtccaaaagtaa 217
             |||||||||||||||||||||
Sbjct: 96062 aatcaaaatgtccaaaagtaa 96042

>gb|AC109227.12| Mus musculus chromosome 7, clone RP23-396C19, complete sequence
          Length = 205016

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 197    aatcaaaatgtccaaaagtaa 217
              |||||||||||||||||||||
Sbjct: 145282 aatcaaaatgtccaaaagtaa 145302

>gb|AC154354.2| Mus musculus BAC clone RP23-203C5 from chromosome 14, complete sequence
          Length = 238278

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 126    ctgttgtatttcatagtgaagaataacta 154
              |||||| || |||||||||||||||||||
Sbjct: 210904 ctgttgcatatcatagtgaagaataacta 210932

>gb|AC159905.3| Pan troglodytes BAC clone CH251-347E2 from chromosome 7, complete
             sequence
          Length = 190027

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   aagattcagttacagatatca 123
             |||||||||||||||||||||
Sbjct: 10472 aagattcagttacagatatca 10492

>emb|BX323560.16| Zebrafish DNA sequence from clone DKEY-265E15 in linkage group 4,
             complete sequence
          Length = 190574

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   cataatgctaatgcatacaaa 178
             |||||||||||||||||||||
Sbjct: 28817 cataatgctaatgcatacaaa 28837

>gb|AC017003.4|AC017003 Homo sapiens clone RP11-78C11, complete sequence
          Length = 118385

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 103   aagattcagttacagatatca 123
             |||||||||||||||||||||
Sbjct: 59838 aagattcagttacagatatca 59818

>gb|AC007599.6| Homo sapiens chromosome 16 clone RP11-177N22, complete sequence
          Length = 182101

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   atgtccaaaagtaattctgac 224
             |||||||||||||||||||||
Sbjct: 68932 atgtccaaaagtaattctgac 68952

>emb|X84913.1|HSPHKBE5 H.sapiens PHKB gene (exon 5)
          Length = 691

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 atgtccaaaagtaattctgac 224
           |||||||||||||||||||||
Sbjct: 595 atgtccaaaagtaattctgac 575

>gb|AC140942.1| Gallus gallus BAC clone TAM32-50C11 from chromosome ul, complete
             sequence
          Length = 140346

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 194   atcaatcaaaatgtccaaaagtaat 218
             |||||||||||| ||||||||||||
Sbjct: 24589 atcaatcaaaatatccaaaagtaat 24613

>gb|AF025457.2| Caenorhabditis elegans cosmid C08E3, complete sequence
          Length = 31445

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   aagtaattctgaccaacaaa 231
             ||||||||||||||||||||
Sbjct: 28833 aagtaattctgaccaacaaa 28814

>gb|AC146377.5| Pan troglodytes BAC clone RP43-79B6 from 7, complete sequence
          Length = 195459

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     aatggaattagccagggtat 46
              ||||||||||||||||||||
Sbjct: 105964 aatggaattagccagggtat 105945

>gb|AC002067.2| Homo sapiens BAC clone CTB-126M9 from 7, complete sequence
          Length = 162912

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    aatggaattagccagggtat 46
             ||||||||||||||||||||
Sbjct: 79421 aatggaattagccagggtat 79402

>gb|AC004453.1| Homo sapiens PAC clone RP5-844F9 from 7, complete sequence
          Length = 146500

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   aatgctaatgcatacaaagt 180
             ||||||||||||||||||||
Sbjct: 43045 aatgctaatgcatacaaagt 43026

>gb|AC097143.9| Rattus norvegicus 4 BAC CH230-185G5 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 83848

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   aagattcagttacagatatc 122
             ||||||||||||||||||||
Sbjct: 83734 aagattcagttacagatatc 83753

>emb|AL691442.32| Human DNA sequence from clone RP11-540D14 on chromosome 1 Contains the
             3' end of the ADAM15 gene for a disintegrin and
             metalloproteinase domain 15 (metargidin), the EFNA4 gene
             for ephrin-A4, the EFNA3 gene for ephrin-A3, the EFNA1
             gene for ephrin-A1, the gene for a novel protein
             (LOC55974), the DPM3 gene for dolichyl-phosphate
             mannosyltransferase polypeptide 3 and four CpG islands,
             complete sequence
          Length = 92095

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ctgttgaggaaatggaatta 36
             ||||||||||||||||||||
Sbjct: 31386 ctgttgaggaaatggaatta 31405

>emb|AL138761.12| Human DNA sequence from clone RP11-16H23 on chromosome 10 Contains
            the 3' end of the gene for Ste20-related serine/threonine
            kinase (SLK, KIAA0204) and the COL17A1 gene for collagen
            type XVII alpha 1, complete sequence
          Length = 141970

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 131  gtatttcatagtgaagaata 150
            ||||||||||||||||||||
Sbjct: 9177 gtatttcatagtgaagaata 9158

>gb|AC136101.2| Rattus norvegicus 4 BAC CH230-158D16 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 160605

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  aagattcagttacagatatc 122
            ||||||||||||||||||||
Sbjct: 1887 aagattcagttacagatatc 1906

>emb|AL391143.1|ATT20K14 Arabidopsis thaliana DNA chromosome 5, BAC clone T20K14 (ESSA project)
          Length = 90176

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   atctaagatcaatcaaaatg 206
             ||||||||||||||||||||
Sbjct: 18402 atctaagatcaatcaaaatg 18383

>gb|AC027807.6| Homo sapiens chromosome 15, clone RP11-342A23, complete sequence
          Length = 181327

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    aaagggtagcaatgctcctc 248
              ||||||||||||||||||||
Sbjct: 148032 aaagggtagcaatgctcctc 148051

>gb|AC022684.5|AC022684 Homo sapiens, clone RP11-59H18, complete sequence
          Length = 164879

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   aaagggtagcaatgctcctc 248
             ||||||||||||||||||||
Sbjct: 77621 aaagggtagcaatgctcctc 77640

>emb|BX511113.8| Zebrafish DNA sequence from clone DKEY-38J10 in linkage group 17,
              complete sequence
          Length = 191193

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    atcaatcaaaatgtccaaaa 213
              ||||||||||||||||||||
Sbjct: 120665 atcaatcaaaatgtccaaaa 120646

>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 348     atattctttgattgtttcta 367
               ||||||||||||||||||||
Sbjct: 1297209 atattctttgattgtttcta 1297228

>gb|BC085029.1| Xenopus laevis hypothetical LOC495464, mRNA (cDNA clone MGC:98311
           IMAGE:7008005), complete cds
          Length = 1337

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 325 tctatcaactcataacataa 344
           ||||||||||||||||||||
Sbjct: 858 tctatcaactcataacataa 877

>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 348     atattctttgattgtttcta 367
               ||||||||||||||||||||
Sbjct: 1402572 atattctttgattgtttcta 1402591


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,238,136
Number of Sequences: 3902068
Number of extensions: 4238136
Number of successful extensions: 78171
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78053
Number of HSP's gapped (non-prelim): 115
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)