ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DNAA_COREF (Q8FUL7) Chromosomal replication initiator protein dnaA 30 4.9

>DNAA_COREF (Q8FUL7) Chromosomal replication initiator protein dnaA|
          Length = 573

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -3

Query: 401 DGQRPLPGGGVQQVELLQEYPGGGLVQQPQGAEGDRVLHRAVQLLR 264
           DG+ P      +Q EL   YPG G  Q PQG +G +  H   Q +R
Sbjct: 98  DGEDPNAPPAPRQQELNYPYPGQG-PQSPQGQQGQQGQHPVQQEVR 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,497,950
Number of Sequences: 219361
Number of extensions: 1167274
Number of successful extensions: 3558
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3554
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top